Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 320 2e-82 >seq1 Length=2377843 Score = 320 bits (354), Expect = 2e-82 Identities = 615/894 (69%), Gaps = 17/894 (2%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 ||||| ||||| || |||||| || ||| |||||| ||||| || ||||| |||||| Sbjct 1803907 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 1803966 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681 || ||| || ||||||||||| ||||| ||||| || | | |||| | ||||| | Sbjct 1803967 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTT-AGTAACATTGTAAACTTTCTT 1804025 Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741 ||| | | |||| |||||||||||||| | | |||| ||||||| |||| || || Sbjct 1804026 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 1804085 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 ||| |||||||| | || || |||| || || ||| |||||||||| | | Sbjct 1804086 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 1804145 Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861 ||||| || ||||| || || ||| || ||| || | || | || Sbjct 1804146 AACAGCTTCAACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGA 1804205 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 || | ||||| ||||||||| ||| | || |||||||||| || | ||| || || Sbjct 1804206 GAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGA 1804265 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || || || ||||||||||| |||| ||||| ||||| || || | ||||||||| || Sbjct 1804266 GAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACC 1804325 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 ||||| || || |||| |||||||| || | |||| ||| || | | || | Sbjct 1804326 ACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATC 1804385 Query 14042 TTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 ||| | | || |||||||| | |||||||||| ||| || ||||| | || ||| Sbjct 1804386 TTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTT 1804444 Query 14101 CAATAGCATTAAATAAATATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158 |||| |||||||| || | || ||||| | | | ||| || || || ||||| | Sbjct 1804445 CAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAATTAA 1804502 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 ||| |||||||||||| || ||||||||||| || || |||||||| || || | Sbjct 1804503 TAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTT 1804562 Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 |||||| | | ||| ||||| | |||| |||| ||| |||||| ||| ||||| Sbjct 1804563 AGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACC 1804622 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TT 14335 |||| ||| || ||||| || || | | || ||| ||| || ||||||| || Sbjct 1804623 ATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT--CT-TTCATTGTCATT 1804679 Query 14336 GAGT---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 | | || |||||||| ||||| ||| | ||| ||||| ||| ||||| || Sbjct 1804680 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 1804739 Query 14393 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 || | ||||||||||| | ||| ||||| | |||| || ||||| Sbjct 1804740 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 1804793 Score = 246 bits (272), Expect = 3e-60 Identities = 593/883 (67%), Gaps = 27/883 (3%) Strand=Plus/Minus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||| || ||| ||||| ||||||||||| || |||||||| ||| |||||||||| Sbjct 1025725 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 1025666 Query 13642 CCATAAAATCAAATGGATTTATTGACATAA--ACACTTTATCACAACCTAGTTCTAATAG 13699 |||| |||||||||||||| | | || | | | |||| |||| ||| | | | | Sbjct 1025665 CCATGAAATCAAATGGATT-AGTCACGTTATAATACTT-ATCATTACCAAAAGCAACCAA 1025608 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||||| ||| | | || | ||||||| |||| ||||||||||||||||| | | Sbjct 1025607 CAATCTATCGGCACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAA 1025548 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || |||| || | || | | ||||| ||| ||||| || | ||||| Sbjct 1025547 AGAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAAT 1025488 Query 13820 AATTGTAATAATCTCATTAGAAGGA----GGATATTTTAGATGTTTAAAAAT--TAAACA 13873 || ||||| |||||| | |||| | | || | ||||| |||||| Sbjct 1025487 CTTTTCTATAATG------GAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACA 1025434 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 ||| |||| |||| || || || |||| || | ||| ||||| || ||||| || Sbjct 1025433 AGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACC 1025374 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||||||| |||| |||||| ||||| || || | ||| |||||||| ||||| || Sbjct 1025373 TGGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAAT 1025314 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATA 14052 || |||| |||||||| || | |||| |||| ||||| | |||| || || | || | Sbjct 1025313 GCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA-A 1025255 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 ||||| | ||||||| || | ||||| ||| | | || | ||||| || || | Sbjct 1025254 TCCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGA 1025195 Query 14113 ATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 | || | || ||| |||| | |||||| ||| || ||||| | | | ||| | Sbjct 1025194 ACAAGAAATCGGCCTCCTTAGGATCCTTGAA--GTAGGTTTCAATTAAAAGGGAATATGT 1025137 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC-TAGCTTCCGACC 14229 ||| || || || |||||||| ||||| || | ||| || | | ||||| | Sbjct 1025136 TTCTGAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAA 1025078 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 || ||||| | |||| |||| |||| |||||||| ||||||||||| || | Sbjct 1025077 GTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAG 1025018 Query 14290 CAAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGTTGAGTTTTTTCC 14346 ||||||| || || | || || ||| | || | |||| ||| | |||| || Sbjct 1025017 CAAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCC 1024958 Query 14347 AATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 |||| ||||| ||| | || | ||| || |||||||||| || |||| || Sbjct 1024957 AATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATT 1024898 Query 14407 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14449 | || || | ||| ||||| |||| ||| ||||| || Sbjct 1024897 TCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAACAC 1024855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727100510000