Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq1 331 9e-86
>seq1
Length=2377843
Score = 331 bits (366), Expect = 9e-86
Identities = 620/897 (69%), Gaps = 23/897 (3%)
Strand=Plus/Plus
Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410
||||| ||||| || |||||| || ||| |||||| ||||| |||||||| ||||||
Sbjct 1803907 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 1803966
Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATC 13469
|| ||| || ||||||||||| ||||||||||| || || |||| | ||||| |
Sbjct 1803967 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTA-ACATTGTAAACTTTCTT 1804025
Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529
||| | | ||||||||||||||||||| | | |||| ||||||| |||| || ||
Sbjct 1804026 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 1804085
Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589
||| |||||||| | || || |||| || ||| ||| |||||||||| | |
Sbjct 1804086 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 1804145
Query 13590 CACAGCCTCGTTTATAATAATCTT---AATAATGTCATTAGAAGGAGGATATTTTAGATG 13646
||||| || | ||||||||| || ||| || ||| || | || | ||
Sbjct 1804146 AACAGCTTCA---ACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTG 1804202
Query 13647 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706
|| | ||||| ||||||||| ||| | || |||||||||| || | ||| ||
Sbjct 1804203 GGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATT 1804262
Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766
|| || || || ||||||||||| |||| ||||| ||||| || || | ||| |||||
Sbjct 1804263 GGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGA 1804322
Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826
|| ||||| || || |||| |||||||| || | | || ||| || | | ||
Sbjct 1804323 ACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGC 1804382
Query 13827 TTTTTTGT-TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 13885
| ||| | |||| |||||||| | |||||||||| ||| || ||||| | ||
Sbjct 1804383 ATCTTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGT 1804441
Query 13886 TTTCGATTGCATTGAATAAATGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943
|||| || ||||| || || || ||||| | | | ||| || || || |||||
Sbjct 1804442 TTTCAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAAT 1804499
Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003
| ||| |||||||||||| || |||||||| || || || |||||||| || |
Sbjct 1804500 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 1804559
Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063
| ||||||||| | ||| || || | |||| |||| |||||||||| ||||||
Sbjct 1804560 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 1804619
Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG-- 14121
||||||| ||| || ||||| || || | | || ||| ||| || |||||||
Sbjct 1804620 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT--CT-TTCATTGTC 1804676
Query 14122 -TTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177
|| | | || |||||||| | ||||| ||| | ||| ||||| ||| |||||
Sbjct 1804677 ATTTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCA 1804736
Query 14178 AAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234
|| || | ||||||||||| | ||| ||||| | |||| || |||||
Sbjct 1804737 GAAGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 1804793
Score = 242 bits (268), Expect = 4e-59
Identities = 591/882 (67%), Gaps = 25/882 (3%)
Strand=Plus/Minus
Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429
|||| || ||| ||||| |||||||| || || |||||||| ||| ||||||||||
Sbjct 1025725 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 1025666
Query 13430 CCATAAAATCGAATGGATTTGTTGACATA-AACACTTTATCACAACCTAGTTCTAATAAT 13488
|||| ||||| |||||||| || || || |||| |||| ||| | | | ||
Sbjct 1025665 CCATGAAATCAAATGGATTAGTCACGTTATAATACTT-ATCATTACCAAAAGCAACCAAC 1025607
Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548
|||||||| ||| | | || | ||||||| |||| ||||||||||||||||| | |
Sbjct 1025606 AATCTATCGGCACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 1025547
Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608
|| |||| || | | || | | ||||| ||| ||||| || | |||||
Sbjct 1025546 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAATC 1025487
Query 13609 ATCTTAATAATGTCATTAGAAGGA----GGATATTTTAGATGTTTAAAAAT--TAAACAC 13662
| | |||||| |||||| | |||| | | || | ||||| ||||||
Sbjct 1025486 TTTTCTATAATG------GAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAA 1025433
Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722
||| |||| |||| || || || |||| || | ||| ||||| || ||||| |||
Sbjct 1025432 GCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCT 1025373
Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782
|||||||| |||| |||||| ||||| || || | ||||||||| || ||||| ||
Sbjct 1025372 GGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAATG 1025313
Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGATAT 13841
|| |||| |||||||| || | | || |||| ||||| | |||| || || |||| ||
Sbjct 1025312 CCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA-AT 1025254
Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901
|||| | ||||||| || | ||||| ||| | | || | || || || |||||
Sbjct 1025253 CCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAA 1025194
Query 13902 TAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959
|| || ||| |||| | |||||| ||| || ||||| | | | ||| ||
Sbjct 1025193 CAAGAAATCGGCCTCCTTAGGATCCTTGAA--GTAGGTTTCAATTAAAAGGGAATATGTT 1025136
Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATC-TAGCTTCTGACCA 14018
|| || || || ||||| || ||||| || | ||| || | | ||||| |
Sbjct 1025135 TCTGAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAG 1025077
Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078
|| || || | |||| |||| ||||||||||||| || |||||||| || ||
Sbjct 1025076 TTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGC 1025017
Query 14079 AAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGTTGAGTTTTTTCCA 14135
|||||| || || | || || ||| | || | |||| ||| | |||| |||
Sbjct 1025016 AAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCCA 1024957
Query 14136 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195
||| | ||||| ||| | || | ||| || |||||||||| || |||| |||
Sbjct 1024956 ATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTT 1024897
Query 14196 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14237
|| || | ||| ||||| |||| ||| ||||| ||
Sbjct 1024896 CTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAACAC 1024855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478587902646000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |