Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 331 9e-86 >seq1 Length=2377843 Score = 331 bits (366), Expect = 9e-86 Identities = 620/897 (69%), Gaps = 23/897 (3%) Strand=Plus/Plus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 ||||| ||||| || |||||| || ||| |||||| ||||| |||||||| |||||| Sbjct 1803907 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 1803966 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATC 13469 || ||| || ||||||||||| ||||||||||| || || |||| | ||||| | Sbjct 1803967 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTA-ACATTGTAAACTTTCTT 1804025 Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529 ||| | | ||||||||||||||||||| | | |||| ||||||| |||| || || Sbjct 1804026 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 1804085 Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589 ||| |||||||| | || || |||| || ||| ||| |||||||||| | | Sbjct 1804086 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 1804145 Query 13590 CACAGCCTCGTTTATAATAATCTT---AATAATGTCATTAGAAGGAGGATATTTTAGATG 13646 ||||| || | ||||||||| || ||| || ||| || | || | || Sbjct 1804146 AACAGCTTCA---ACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTG 1804202 Query 13647 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706 || | ||||| ||||||||| ||| | || |||||||||| || | ||| || Sbjct 1804203 GGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATT 1804262 Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766 || || || || ||||||||||| |||| ||||| ||||| || || | ||| ||||| Sbjct 1804263 GGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGA 1804322 Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826 || ||||| || || |||| |||||||| || | | || ||| || | | || Sbjct 1804323 ACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGC 1804382 Query 13827 TTTTTTGT-TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 13885 | ||| | |||| |||||||| | |||||||||| ||| || ||||| | || Sbjct 1804383 ATCTTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGT 1804441 Query 13886 TTTCGATTGCATTGAATAAATGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 |||| || ||||| || || || ||||| | | | ||| || || || ||||| Sbjct 1804442 TTTCAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAAT 1804499 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 | ||| |||||||||||| || |||||||| || || || |||||||| || | Sbjct 1804500 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 1804559 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 | ||||||||| | ||| || || | |||| |||| |||||||||| |||||| Sbjct 1804560 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 1804619 Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG-- 14121 ||||||| ||| || ||||| || || | | || ||| ||| || ||||||| Sbjct 1804620 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT--CT-TTCATTGTC 1804676 Query 14122 -TTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 || | | || |||||||| | ||||| ||| | ||| ||||| ||| ||||| Sbjct 1804677 ATTTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCA 1804736 Query 14178 AAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 || || | ||||||||||| | ||| ||||| | |||| || ||||| Sbjct 1804737 GAAGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 1804793 Score = 242 bits (268), Expect = 4e-59 Identities = 591/882 (67%), Gaps = 25/882 (3%) Strand=Plus/Minus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||| || ||| ||||| |||||||| || || |||||||| ||| |||||||||| Sbjct 1025725 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 1025666 Query 13430 CCATAAAATCGAATGGATTTGTTGACATA-AACACTTTATCACAACCTAGTTCTAATAAT 13488 |||| ||||| |||||||| || || || |||| |||| ||| | | | || Sbjct 1025665 CCATGAAATCAAATGGATTAGTCACGTTATAATACTT-ATCATTACCAAAAGCAACCAAC 1025607 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 |||||||| ||| | | || | ||||||| |||| ||||||||||||||||| | | Sbjct 1025606 AATCTATCGGCACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 1025547 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 || |||| || | | || | | ||||| ||| ||||| || | ||||| Sbjct 1025546 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAATC 1025487 Query 13609 ATCTTAATAATGTCATTAGAAGGA----GGATATTTTAGATGTTTAAAAAT--TAAACAC 13662 | | |||||| |||||| | |||| | | || | ||||| |||||| Sbjct 1025486 TTTTCTATAATG------GAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAA 1025433 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||| |||| |||| || || || |||| || | ||| ||||| || ||||| ||| Sbjct 1025432 GCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCT 1025373 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 |||||||| |||| |||||| ||||| || || | ||||||||| || ||||| || Sbjct 1025372 GGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAATG 1025313 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGATAT 13841 || |||| |||||||| || | | || |||| ||||| | |||| || || |||| || Sbjct 1025312 CCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA-AT 1025254 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||| | ||||||| || | ||||| ||| | | || | || || || ||||| Sbjct 1025253 CCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAA 1025194 Query 13902 TAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 || || ||| |||| | |||||| ||| || ||||| | | | ||| || Sbjct 1025193 CAAGAAATCGGCCTCCTTAGGATCCTTGAA--GTAGGTTTCAATTAAAAGGGAATATGTT 1025136 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATC-TAGCTTCTGACCA 14018 || || || || ||||| || ||||| || | ||| || | | ||||| | Sbjct 1025135 TCTGAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAG 1025077 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || || || | |||| |||| ||||||||||||| || |||||||| || || Sbjct 1025076 TTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGC 1025017 Query 14079 AAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGTTGAGTTTTTTCCA 14135 |||||| || || | || || ||| | || | |||| ||| | |||| ||| Sbjct 1025016 AAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCCA 1024957 Query 14136 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195 ||| | ||||| ||| | || | ||| || |||||||||| || |||| ||| Sbjct 1024956 ATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTT 1024897 Query 14196 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14237 || || | ||| ||||| |||| ||| ||||| || Sbjct 1024896 CTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAACAC 1024855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587902646000