Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq16 114 1e-20 seq5 104 2e-17 >seq16 Length=329187 Score = 114 bits (126), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || |||| |||||| ||||| |||||||| || ||||| || | | Sbjct 297499 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAC 297440 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| |||||||| ||| | || | ||| || ||||| || Sbjct 297439 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGA 297380 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT- 18993 | || |||||||| ||||| ||| || | | | | || ||| ||| | || Sbjct 297379 ATACCTTCTTTGTCTTGGATTTTAGATTTGACATTGTCAATGGTGTCGG-AGGATTCGAC 297321 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 ||| | |||||| |||||||| ||||| || ||||| ||||||||||| || ||| Sbjct 297320 TTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTTTAAT 297266 >seq5 Length=745199 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || |||| |||||| ||||| || |||||||| ||||| || | | Sbjct 622550 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGAC 622609 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| || | |||||||| || |||| | ||| || ||||| || Sbjct 622610 AAGGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 622669 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || ||||| ||| || | | | || || || || | Sbjct 622670 ATACCTTCTTTATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTCGACT 622729 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| |||||||| ||||||||||| || ||||||||||| Sbjct 622730 TCTAAGGTAATAGTTTTACCAGTTAAAGTTTTAACGAAAATTTGCAT 622776 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || |||| |||||| ||||| ||||||||||| ||||| || | | Sbjct 622778 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 622837 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | ||| | |||| || | |||||||| ||| |||| | ||| || ||||| Sbjct 622838 AAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATC 622890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572042109100