Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 279 4e-70 >seq1 Length=2377843 Score = 279 bits (308), Expect = 4e-70 Identities = 610/903 (68%), Gaps = 17/903 (2%) Strand=Plus/Plus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| |||||| || || |||||| ||||| |||||||| ||||| Sbjct 1803907 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 1803966 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTT 12958 || | || |||||||||||||| |||||||| || || | |||| | ||| ||| Sbjct 1803967 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGT--AACATT-GTAAACTTTC 1804023 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || || || | | ||| ||||| ||||||||| | || | || || ||| || Sbjct 1804024 TTGTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAG 1804083 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 ||||||||||| || | ||| || || | ||| || || ||| | | |||||| | | Sbjct 1804084 TCACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACA 1804143 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGAT-TTGATAGAT 13136 ||||| ||||| | || || | | | | | |||| | |||| | ||| || | Sbjct 1804144 TCAACAGCTTCAACAATAATCTTT-TCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-T 1804201 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 | |||| || ||| ||||||||| || || ||||||||||||| || | || | Sbjct 1804202 GGGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCAT 1804261 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 | || || || | ||| ||||| | |||| ||||| | ||| || |||| |||||| | Sbjct 1804262 TGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATG 1804321 Query 13257 AAC--CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 ||| | ||| |||||| ||||||| || ||||| || | ||| |||||| |||| Sbjct 1804322 AACCACTGAAGAAAATA--CCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAA 1804379 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 | || |||| | ||||| || ||||||| | ||||| | ||| || || Sbjct 1804380 AGCATCTTTATCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAAT 1804439 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 ||||| || || ||||| || ||| ||| | |||| || |||||| || || Sbjct 1804440 GTTTTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAAT 1804499 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 ||||| ||||||||| |||||||| ||||||||| |||||||||||||| || | Sbjct 1804500 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 1804559 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | |||| |||| | || ||||||| |||| |||| |||||||| ||| || Sbjct 1804560 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 1804619 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--- 13611 || ||| |||||| ||||| || | | || ||| | | |||| || || Sbjct 1804620 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATT 1804679 Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | | || |||||| |||||||| |||||| || || ||| ||||| || Sbjct 1804680 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 1804739 Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 || || | || || ||||| | |||| || || | ||| ||| ||||||| ||| Sbjct 1804740 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAAC 1804799 Query 13732 GTA 13734 || Sbjct 1804800 ATA 1804802 Score = 138 bits (152), Expect = 1e-27 Identities = 562/875 (64%), Gaps = 37/875 (4%) Strand=Plus/Minus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 ||||| |||||||| || || ||||| || | || || ||||||||||| ||||| || Sbjct 1025711 ACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTTCCATGAAATCAAAT 1025652 Query 12935 GGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACA 12994 ||||| || ||| || || | | || || | | |||||||| || ||| | Sbjct 1025651 GGATTAGTCACGTTATAATACTTATCATTACCAAAAGCAACCAACAATCTATCGGCACAA 1025592 Query 12995 AACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCT 13054 | || | || || ||| |||||||| ||||| || | || || || | || Sbjct 1025591 TATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAAGAAACTGGAAGCGCA 1025532 Query 13055 TCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GATAACTATGTCTCTTATTACG 13111 || | || | || ||||| ||| ||| ||||| ||||| |||| Sbjct 1025531 TCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAA-------TCTT------ 1025485 Query 13112 TTCTCTAATGGA-GGATTTGATAGATGCTT---------AAACATCATACATGCAAAATC 13161 |||| ||||||| |||| | || || ||| | | ||| ||| |||| Sbjct 1025484 TTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAAGCATAATC 1025425 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 ||| | ||||| || |||| || | || ||||| || |||| ||| ||||| | Sbjct 1025424 GGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCTGGCATCAA 1025365 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 ||||| |||||| | ||| || || | ||| || || || || || || ||||||| Sbjct 1025364 CCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAATGCCTTCAAT 1025305 Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTA-TCCACTTTC 13340 || ||||| || | ||| ||||| || || | || || ||| | |||| | Sbjct 1025304 AGCAGCAAATGCCACCAATCTTTCTGCAAACA-AGGCTTCTTCGTCTTGAATCCATCTAA 1025246 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 | ||||| | |||||||| || | | || ||||| || || ||||| || || ||| Sbjct 1025245 TAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAACAAGAAAT 1025186 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 |||||| || | || || || || || | | ||| |||||||||| | Sbjct 1025185 CGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTTCTGAATGGA 1025126 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATC-TAGCCTCTGATACCTGAACTTCG 13519 ||||||||||| || ||||| | ||| || | | || || | | | |||||| Sbjct 1025125 TATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAGTTTAACTTCA 1025067 Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC- 13578 | |||| |||| | |||||||| || ||||| || || ||||||||||| || Sbjct 1025066 GTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGCAAAAAAGGCT 1025007 Query 13579 --AAGT-ATGTGCTTAATAAAttttttttCGTT-TTCTGACAACTTTAACCAATCTGGAA 13634 || | || | | || |||| ||| || || ||| | ||| |||||| || Sbjct 1025006 AAAACTCTTGAGATGAA-AAATCTTTCATCTTTATTCATTTTA-TTTTCCCAATCATCAA 1024949 Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACA 13694 ||||||| || || | || || | |||||||| || ||||||| ||||| || | Sbjct 1024948 AATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTTCTTGTAGA 1024889 Query 13695 TCATCCATATATCCTTATAAACAATGGGAAACACA 13729 |||| || || ||| || ||||||||| Sbjct 1024888 AAGTCCAAATTTCAGGATATTTTATTGGAAACACA 1024854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981612110300