Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1 279 4e-70
>seq1
Length=2377843
Score = 279 bits (308), Expect = 4e-70
Identities = 610/903 (68%), Gaps = 17/903 (2%)
Strand=Plus/Plus
Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901
|| ||||||||| |||||| || || |||||| ||||| |||||||| |||||
Sbjct 1803907 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 1803966
Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTT 12958
|| | || |||||||||||||| |||||||| || || | |||| | ||| |||
Sbjct 1803967 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGT--AACATT-GTAAACTTTC 1804023
Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018
|| || || | | ||| ||||| ||||||||| | || | || || ||| ||
Sbjct 1804024 TTGTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAG 1804083
Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078
||||||||||| || | ||| || || | ||| || || ||| | | |||||| | |
Sbjct 1804084 TCACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACA 1804143
Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGAT-TTGATAGAT 13136
||||| ||||| | || || | | | | | |||| | |||| | ||| || |
Sbjct 1804144 TCAACAGCTTCAACAATAATCTTT-TCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-T 1804201
Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196
| |||| || ||| ||||||||| || || ||||||||||||| || | || |
Sbjct 1804202 GGGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCAT 1804261
Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256
| || || || | ||| ||||| | |||| ||||| | ||| || |||| |||||| |
Sbjct 1804262 TGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATG 1804321
Query 13257 AAC--CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314
||| | ||| |||||| ||||||| || ||||| || | ||| |||||| ||||
Sbjct 1804322 AACCACTGAAGAAAATA--CCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAA 1804379
Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374
| || |||| | ||||| || ||||||| | ||||| | ||| || ||
Sbjct 1804380 AGCATCTTTATCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAAT 1804439
Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434
||||| || || ||||| || ||| ||| | |||| || |||||| || ||
Sbjct 1804440 GTTTTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAAT 1804499
Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494
||||| ||||||||| |||||||| ||||||||| |||||||||||||| || |
Sbjct 1804500 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 1804559
Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554
| |||| |||| | || ||||||| |||| |||| |||||||| ||| ||
Sbjct 1804560 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 1804619
Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--- 13611
|| ||| |||||| ||||| || | | || ||| | | |||| || ||
Sbjct 1804620 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATT 1804679
Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671
| | || |||||| |||||||| |||||| || || ||| ||||| ||
Sbjct 1804680 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 1804739
Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731
|| || | || || ||||| | |||| || || | ||| ||| ||||||| |||
Sbjct 1804740 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAAC 1804799
Query 13732 GTA 13734
||
Sbjct 1804800 ATA 1804802
Score = 138 bits (152), Expect = 1e-27
Identities = 562/875 (64%), Gaps = 37/875 (4%)
Strand=Plus/Minus
Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934
||||| |||||||| || || ||||| || | || || ||||||||||| ||||| ||
Sbjct 1025711 ACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTTCCATGAAATCAAAT 1025652
Query 12935 GGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACA 12994
||||| || ||| || || | | || || | | |||||||| || ||| |
Sbjct 1025651 GGATTAGTCACGTTATAATACTTATCATTACCAAAAGCAACCAACAATCTATCGGCACAA 1025592
Query 12995 AACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCT 13054
| || | || || ||| |||||||| ||||| || | || || || | ||
Sbjct 1025591 TATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAAGAAACTGGAAGCGCA 1025532
Query 13055 TCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GATAACTATGTCTCTTATTACG 13111
|| | || | || ||||| ||| ||| ||||| ||||| ||||
Sbjct 1025531 TCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAA-------TCTT------ 1025485
Query 13112 TTCTCTAATGGA-GGATTTGATAGATGCTT---------AAACATCATACATGCAAAATC 13161
|||| ||||||| |||| | || || ||| | | ||| ||| ||||
Sbjct 1025484 TTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAAGCATAATC 1025425
Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221
||| | ||||| || |||| || | || ||||| || |||| ||| ||||| |
Sbjct 1025424 GGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCTGGCATCAA 1025365
Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281
||||| |||||| | ||| || || | ||| || || || || || || |||||||
Sbjct 1025364 CCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAATGCCTTCAAT 1025305
Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTA-TCCACTTTC 13340
|| ||||| || | ||| ||||| || || | || || ||| | |||| |
Sbjct 1025304 AGCAGCAAATGCCACCAATCTTTCTGCAAACA-AGGCTTCTTCGTCTTGAATCCATCTAA 1025246
Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400
| ||||| | |||||||| || | | || ||||| || || ||||| || || |||
Sbjct 1025245 TAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAACAAGAAAT 1025186
Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460
|||||| || | || || || || || | | ||| |||||||||| |
Sbjct 1025185 CGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTTCTGAATGGA 1025126
Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATC-TAGCCTCTGATACCTGAACTTCG 13519
||||||||||| || ||||| | ||| || | | || || | | | ||||||
Sbjct 1025125 TATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAGTTTAACTTCA 1025067
Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC- 13578
| |||| |||| | |||||||| || ||||| || || ||||||||||| ||
Sbjct 1025066 GTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGCAAAAAAGGCT 1025007
Query 13579 --AAGT-ATGTGCTTAATAAAttttttttCGTT-TTCTGACAACTTTAACCAATCTGGAA 13634
|| | || | | || |||| ||| || || ||| | ||| |||||| ||
Sbjct 1025006 AAAACTCTTGAGATGAA-AAATCTTTCATCTTTATTCATTTTA-TTTTCCCAATCATCAA 1024949
Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACA 13694
||||||| || || | || || | |||||||| || ||||||| ||||| || |
Sbjct 1024948 AATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTTCTTGTAGA 1024889
Query 13695 TCATCCATATATCCTTATAAACAATGGGAAACACA 13729
|||| || || ||| || |||||||||
Sbjct 1024888 AAGTCCAAATTTCAGGATATTTTATTGGAAACACA 1024854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430981612110300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |