Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 197 3e-45 seq5 159 8e-34 >seq1 Length=2377843 Score = 197 bits (218), Expect = 3e-45 Identities = 623/953 (65%), Gaps = 32/953 (3%) Strand=Plus/Minus Query 268705 TGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTC 268764 ||| || |||||||| | || ||| || |||| | || ||| | |||| || || Sbjct 1804800 TGTTATGTTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTC 1804741 Query 268765 TTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA----AAATT 268820 || |||||| |||||||| ||| | | | || || |||||||| ||||| Sbjct 1804740 CTTCTGGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATT 1804681 Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATG 268880 || || | |||||| ||| | ||| || | || ||||| || | | ||||| Sbjct 1804680 AAATGACA-ATGAAAGATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATG 1804622 Query 268881 GTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA 268940 |||| ||| ||||| | | || || || | | || || || | || ||||| | Sbjct 1804621 GTATTGTTGGTGAAAACTTGATTGAAAACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTA 1804562 Query 268941 GATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTAT 269000 || || || || ||||| || || ||||| |||||||| || ||||| | ||| Sbjct 1804561 AATCATTCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTAT 1804502 Query 269001 TAATAGATACTTATATAGATGATA-ACAACGAAAAGAAAAGACTATTTTCTTCTAT-GAG 269058 |||| || |||||| | | || |||| ||| | | ||| | | || || Sbjct 1804501 TAATTGAAACTTATGTTAAAGACCCACAA-GAAGCTGATTTCTTGTTTAATGCCATTGAA 1804443 Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGC 269118 ||| | | ||| | | || ||| |||||||||| | |||||||| | |||| | Sbjct 1804442 AACATTCCA-TGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGA 1804384 Query 269119 GCCTT---ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 ||| | | ||||| || ||||||||||| ||| | |||||||| ||||| || Sbjct 1804383 TGCTTTATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGG 1804324 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTC 269235 || ||||| ||||||| |||||||| || ||||| | |||||||| || |||||||| Sbjct 1804323 TTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTC 1804264 Query 269236 TAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 || |||||||| | || || ||||||||||| || || |||||||| || || | Sbjct 1804263 CAATGAATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTC 1804204 Query 269296 TAATTATCTTTC-ACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTG 269354 | ||| | ||||| ||| |||| ||| | || | | ||||| | | ||||| Sbjct 1804203 CCA----CTTGCAACACAGACCATCTCCAGAAATTGTTGAAAAGATTATTGTTGAAGCTG 1804148 Query 269355 TTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATA 269414 || ||| |||| ||||| | | || || ||||| | | | | | |||||||| Sbjct 1804147 TTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACT 1804088 Query 269415 GCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGT 269474 | | | |||| ||||| || | | || |||||||||| | | | || || Sbjct 1804087 GTGACTTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCCTTGGG-- 1804030 Query 269475 TTAGTAAAAAA---TATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAG 269531 || || ||| || || ||| || || || ||| ||||| ||||| || || | Sbjct 1804029 -TAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGG 1803971 Query 269532 AAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGT 269591 ||||| | || || ||||| ||| | || | | || || ||| ||||| |||| Sbjct 1803970 CTGGTAAAACCAACTTTTTCGAAAAGAGAGTTTCTGATTACCAAAAAGCTGGTGTTATGT 1803911 Query 269592 CTA---CTAAAGA---AGAAA---ATATTTTCACTACAGATGCAGAATTCTAA 269635 ||| || |||| ||||| | ||||||| |||| ||| |||||| Sbjct 1803910 CTAAAGCTGAAGACAGAGAAACCGGTGCTTTCACTTTTGATGAAGATTTCTAA 1803858 Score = 156 bits (172), Expect = 1e-32 Identities = 404/603 (67%), Gaps = 36/603 (6%) Strand=Plus/Plus Query 268712 TTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGG 268771 ||||||||| | || ||| || |||| | ||||| | | ||||| || |||||| Sbjct 1024858 TTTCCAATAAAATATCCTGAAATTTGGACTTTCTACAAGAAATCTGTTGCATCATTTTGG 1024917 Query 268772 ACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAA 268831 || | ||||||| | || || | | || || |||||| ||||| |||| ||| Sbjct 1024918 ACAGCAGAAGAAATTGACTTGAGTAAAGATTTTGATGATTGGGAAAAT--AAAAT--GAA 1024973 Query 268832 GAAAGA----AGATTTAT-ATCTTATA--TTCTTGCGTTTTTTGCAGTTAGTGATGGTAT 268884 ||||| |||||| | |||| | || | || |||||||| | |||||||| Sbjct 1024974 TAAAGATGAAAGATTTTTCATCTCAAGAGTTTTAGCCTTTTTTGCTGCATCAGATGGTAT 1025033 Query 268885 CGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA-GAT 268943 || || ||||| | || || || || ||| || || | |||||||||||| | | Sbjct 1025034 AGTCAATGAAAACTTGGTTGAAAACTTTTGTACTGAAGTTAAACTTCCTGAAGCCAAGCT 1025093 Query 268944 GTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAA 269003 | ||| || ||||||||| || |||||||| |||||||| | || || |||| Sbjct 1025094 GGTTT-ACAAATTCCAGATCATGATGGAAAATATCCATTCAGAAACATATTCCCTTTTAA 1025152 Query 269004 TAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT--TCTTCTA------T 269055 | || || || | | ||| || || | | |||| | ||| | | Sbjct 1025153 TTGAAACCTACTTCAAGGATCCTAAGGAG-------GCCGATTTCTTGTTCAACGCCATT 1025205 Query 269056 GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGA 269112 || || ||| | | | | ||||| | || |||||| | | |||||| | |||| Sbjct 1025206 GACAA-TATTAAATACATTGGTGAAAAAGCAGATTGGGCTATTAGATGGATTCAAGACGA 1025264 Query 269113 TAGCGCGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 || ||||| | |||||| || || || ||||| ||| | ||||| || ||||| Sbjct 1025265 -AGAA-GCCTTGTTTGCAGAAAGATTGGTGGCATTTGCTGCTATTGAAGGCATTTTCTTC 1025322 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 ||||| || || | || || |||||||| |||||||| | |||||||| |||||| Sbjct 1025323 AGTGGGTCATTCGCTTCCATTTTCTGGTTGAAAAAAAGAGGGTTGATGCCAGGTTTAACT 1025382 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 ||||| || |||||||| | |||||||||||| | ||| ||| | ||||||||| || Sbjct 1025383 TTCTCAAATGAATTGATCTGTAGGGACGAAGGTATTCACACCGATTATGCTTGTTTACTA 1025442 Query 269291 TTT 269293 ||| Sbjct 1025443 TTT 1025445 >seq5 Length=745199 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||||||||| ||||| || |||||||| | |||||||||||||||| |||| Sbjct 622574 TGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAATTGT 622633 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| ||||| | || |||||||| || || || ||||||||||| || || || Sbjct 622634 TTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATTTTG 622693 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | ||| || || || | ||| || || ||| || |||| |||||||| |||||||| Sbjct 622694 GATTTGACGTTATCAATGGTGTCAGAAGATTCGACTTCTAAGGTAATAGTTTTACCAGTT 622753 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | ||||| || || || ||||| Sbjct 622754 AAAGTTTTAACGAAAATTTGCAT 622776 Score = 104 bits (114), Expect = 5e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 165095 ACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAG 165154 || |||| |||||||||| |||||||| | || || ||||||||||||||||| || Sbjct 540109 ACAGATATTGATGAATGGACAACTTGGAAAACAAGACTGGATCCTGTTTTACATATTGAA 540050 Query 165155 CTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAG 165214 ||||||||||||| ||||| | || | || ||||| ||||| | ||| || || Sbjct 540049 TTAAGAAGATGGGCTGATATCTTATTAGTTTGTCCATTAACTGCAAATACTTTGGCTAAA 539990 Query 165215 ATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269 || || ||||| ||| |||| || ||||| | | | ||||| ||||||| Sbjct 539989 ATTTCTTTAGGTATATGTGATAATTTATTAACTAATGTTATCAGAGCTTGGAATA 539935 Score = 100 bits (110), Expect = 7e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || |||||||| || ||||| || |||||||| | ||||||||||||||||| |||| Sbjct 622802 TGCAAAGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCTAATTGT 622861 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||||||||| | || |||||||| || || Sbjct 622862 TTACCAGCAAAAATCAATCTTTGTTGATCTGGTGG 622896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396187156200