Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq1 269 3e-67
seq2 167 3e-36
seq3 87.8 2e-12
>seq1
Length=2377843
Score = 269 bits (298), Expect = 3e-67
Identities = 470/681 (69%), Gaps = 32/681 (5%)
Strand=Plus/Plus
Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869
||||||||| | ||| | | |||||| ||||| | |||||||| || | ||||||||
Sbjct 1090308 TTGTTCTTTCAAAGCATCCACATGATCCAAATACACGTGAGCATCACCCATAGTATGAAT 1090367
Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929
||||||||| | ||||||||| | |||||||| | | ||||| || ||||| ||
Sbjct 1090368 AAATTCACCACAATCCATATCAACCACATGAGCAATCATCTTAGTTAACAAAGCATAGGA 1090427
Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGA 6989
||| | || ||||| || || || |||||||| ||||| ||||| || ||| ||
Sbjct 1090428 AGCAATGTTGAAAGGAACTCCCAAACCCATATCACAAGATCTCTGATACAATAAACATGA 1090487
Query 6990 TAAAATA---------TTGTCTA------TAGCATAAAATTGACACAATACATGACATGG 7034
||| || || ||| || |||| |||||||| || |||||||||||
Sbjct 1090488 TAATTTAGGTTTAGCGTTTTCTGGGAAATTAACATAGAATTGACAAAAGACATGACATGG 1090547
Query 7035 AGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATC 7094
||||||| | | ||| | ||| | ||||||||| ||| |||| | || | ||||||
Sbjct 1090548 AGGTAAAGCCATTTTATCAAAATCTGGTGGATTCCAGGCACTCATGATTATTCTTCTATC 1090607
Query 7095 ATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTC 7154
|| ||| || | |||||||| | || || ||| || ||||| ||| || ||
Sbjct 1090608 ATATGGGTTGGACTTTAATTTCTTAATGATATCTTGCAACTGATCATAACCTTGTCCAGT 1090667
Query 7155 ATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAAT 7214
||||| || || ||||| | |||| | ||| ||||| ||||||||||| || |||||||
Sbjct 1090668 ATAATCAGCATCACAATCTTTATATTCAGCACCAAAGTGTCTCCATTGGAAACCATAAAC 1090727
Query 7215 AGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAA---TTA-GATT 7270
|| || ||||||||||| ||||||| | |||||||| || |||| | | ||
Sbjct 1090728 TGGTCCCAAATCACCTTCACGACGATGAGTCAATCCTAACTTATCTAAAAACTCACGA-- 1090785
Query 7271 TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAG 7330
||||||| | | |||||||| | ||| ||| || | |||| || || || || |
Sbjct 1090786 --GATCCATTACCTTCCCAAATTTTAACACCTTTGTTGGTTAAAATTTTAGCATCGGTTG 1090843
Query 7331 ATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAG 7390
|||| || |||||||| | ||| | | || || |||| | | | || ||||
Sbjct 1090844 ATCCAGCAATAAACCATAATAATTCATGAATGATACCTTTAGAAAAGACTTTCTTGGTAG 1090903
Query 7391 TGAATAAAGGGAATGTA------CTTAAATCATATCT--ATTCT-GTAAACCAAATACTG 7441
| || || || |||||| ||||||| |||| ||| | || | |||| | ||
Sbjct 1090904 TTAACAATGGAAATGTATCATTTGATAAATCAAATCTTAATTGTGGTGGAGCAAAAAGTG 1090963
Query 7442 AAAGAGTACCTGTTCCAGTTC 7462
| ||| |||||||| ||||
Sbjct 1090964 ATTTAGTTCCTGTTCCTGTTC 1090984
>seq2
Length=1666313
Score = 167 bits (184), Expect = 3e-36
Identities = 310/454 (68%), Gaps = 21/454 (5%)
Strand=Plus/Plus
Query 164495 aaaaaTTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554
||||||| | | ||||||| ||||| | ||||| |||| ||||| ||| ||||
Sbjct 219918 AAAAATTGGATTATAAACATTGTAAAGGGTTGTTATTGTATGGTCCTCCAGGTACTGGTA 219977
Query 164555 AAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTG 164611
|||| ||||| || || | || || | || ||| | || || ||||||||
Sbjct 219978 AAACTTTAATTGCCAGAAAATTATCTAAAA-TGTTGAATGGTAAAGAACC--TAAAATTG 220034
Query 164612 TTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGT 164671
|||||||||| ||| | |||| |||||||| |||| || |||| ||| || | || |
Sbjct 220035 TTAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCTTCTGAAGAAAATATTCGTAATT 220094
Query 164672 TGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTA 164731
| || | || || |||| |||| | || | |||| || | | | ||||||||||
Sbjct 220095 TATTCAAAGATGCCGAAGCAGAATATAAATTAAAAGGTGAAGATTCTGATTTACATGTTA 220154
Query 164732 TTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG------------TGAT---A 164776
|| |||||||||| | ||| || ||| |||| || | || |||| |
Sbjct 220155 TTATTTTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGGTCAGGTAAATCTGATGGAA 220214
Query 164777 ATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836
| | || |||| || || ||||| || | || ||||| |||||||| || |
Sbjct 220215 CTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCCAAAATGGATGGTGTTGATCAAT 220274
Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896
| |||||||||||| || | ||||||||||| || |||||||||||| ||| || |
Sbjct 220275 TGAATAATATTTTAGTTATTGGTATGACCAATCGTTTGGATTTAATTGATACTGCATTGT 220334
Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAAT 164930
|| |||| ||| |||| ||| | |||| |||||
Sbjct 220335 TAAGACCAGGTAGATTTGAAATTCAAATCGAAAT 220368
>seq3
Length=1232947
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387
|| ||| ||| | | ||| | | || || || |||| |||||||| |||||||||
Sbjct 1155535 GTCAAAGTTAGAATGAGAACAACCAAGATTCCGCAAATTGGTGATAAATTTGCTTCTAGA 1155594
Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447
|| |||||| || || ||| | | |||| | || ||||||||||| || | | |
Sbjct 1155595 CATGGTCAAAAGGGTACTATTGGGGTTACTTATAGACATGAAGATATGCCATTCAGTGCA 1155654
Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503
|| ||||| || || ||| | ||||| ||||| |||||| ||||| || |||||
Sbjct 1155655 GAAGGTATTGTCCCAGATTTGATTATCAACCCTCATGCTATTCCATCCCGTATGAC 1155710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595870882740000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |