Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 269 3e-67 seq2 167 3e-36 seq3 87.8 2e-12 >seq1 Length=2377843 Score = 269 bits (298), Expect = 3e-67 Identities = 470/681 (69%), Gaps = 32/681 (5%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||||||| | ||| | | |||||| ||||| | |||||||| || | |||||||| Sbjct 1090308 TTGTTCTTTCAAAGCATCCACATGATCCAAATACACGTGAGCATCACCCATAGTATGAAT 1090367 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||||||||| | ||||||||| | |||||||| | | ||||| || ||||| || Sbjct 1090368 AAATTCACCACAATCCATATCAACCACATGAGCAATCATCTTAGTTAACAAAGCATAGGA 1090427 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGA 6989 ||| | || ||||| || || || |||||||| ||||| ||||| || ||| || Sbjct 1090428 AGCAATGTTGAAAGGAACTCCCAAACCCATATCACAAGATCTCTGATACAATAAACATGA 1090487 Query 6990 TAAAATA---------TTGTCTA------TAGCATAAAATTGACACAATACATGACATGG 7034 ||| || || ||| || |||| |||||||| || ||||||||||| Sbjct 1090488 TAATTTAGGTTTAGCGTTTTCTGGGAAATTAACATAGAATTGACAAAAGACATGACATGG 1090547 Query 7035 AGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATC 7094 ||||||| | | ||| | ||| | ||||||||| ||| |||| | || | |||||| Sbjct 1090548 AGGTAAAGCCATTTTATCAAAATCTGGTGGATTCCAGGCACTCATGATTATTCTTCTATC 1090607 Query 7095 ATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTC 7154 || ||| || | |||||||| | || || ||| || ||||| ||| || || Sbjct 1090608 ATATGGGTTGGACTTTAATTTCTTAATGATATCTTGCAACTGATCATAACCTTGTCCAGT 1090667 Query 7155 ATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAAT 7214 ||||| || || ||||| | |||| | ||| ||||| ||||||||||| || ||||||| Sbjct 1090668 ATAATCAGCATCACAATCTTTATATTCAGCACCAAAGTGTCTCCATTGGAAACCATAAAC 1090727 Query 7215 AGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAA---TTA-GATT 7270 || || ||||||||||| ||||||| | |||||||| || |||| | | || Sbjct 1090728 TGGTCCCAAATCACCTTCACGACGATGAGTCAATCCTAACTTATCTAAAAACTCACGA-- 1090785 Query 7271 TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAG 7330 ||||||| | | |||||||| | ||| ||| || | |||| || || || || | Sbjct 1090786 --GATCCATTACCTTCCCAAATTTTAACACCTTTGTTGGTTAAAATTTTAGCATCGGTTG 1090843 Query 7331 ATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAG 7390 |||| || |||||||| | ||| | | || || |||| | | | || |||| Sbjct 1090844 ATCCAGCAATAAACCATAATAATTCATGAATGATACCTTTAGAAAAGACTTTCTTGGTAG 1090903 Query 7391 TGAATAAAGGGAATGTA------CTTAAATCATATCT--ATTCT-GTAAACCAAATACTG 7441 | || || || |||||| ||||||| |||| ||| | || | |||| | || Sbjct 1090904 TTAACAATGGAAATGTATCATTTGATAAATCAAATCTTAATTGTGGTGGAGCAAAAAGTG 1090963 Query 7442 AAAGAGTACCTGTTCCAGTTC 7462 | ||| |||||||| |||| Sbjct 1090964 ATTTAGTTCCTGTTCCTGTTC 1090984 >seq2 Length=1666313 Score = 167 bits (184), Expect = 3e-36 Identities = 310/454 (68%), Gaps = 21/454 (5%) Strand=Plus/Plus Query 164495 aaaaaTTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554 ||||||| | | ||||||| ||||| | ||||| |||| ||||| ||| |||| Sbjct 219918 AAAAATTGGATTATAAACATTGTAAAGGGTTGTTATTGTATGGTCCTCCAGGTACTGGTA 219977 Query 164555 AAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTG 164611 |||| ||||| || || | || || | || ||| | || || |||||||| Sbjct 219978 AAACTTTAATTGCCAGAAAATTATCTAAAA-TGTTGAATGGTAAAGAACC--TAAAATTG 220034 Query 164612 TTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGT 164671 |||||||||| ||| | |||| |||||||| |||| || |||| ||| || | || | Sbjct 220035 TTAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCTTCTGAAGAAAATATTCGTAATT 220094 Query 164672 TGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTA 164731 | || | || || |||| |||| | || | |||| || | | | |||||||||| Sbjct 220095 TATTCAAAGATGCCGAAGCAGAATATAAATTAAAAGGTGAAGATTCTGATTTACATGTTA 220154 Query 164732 TTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG------------TGAT---A 164776 || |||||||||| | ||| || ||| |||| || | || |||| | Sbjct 220155 TTATTTTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGGTCAGGTAAATCTGATGGAA 220214 Query 164777 ATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836 | | || |||| || || ||||| || | || ||||| |||||||| || | Sbjct 220215 CTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCCAAAATGGATGGTGTTGATCAAT 220274 Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896 | |||||||||||| || | ||||||||||| || |||||||||||| ||| || | Sbjct 220275 TGAATAATATTTTAGTTATTGGTATGACCAATCGTTTGGATTTAATTGATACTGCATTGT 220334 Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAAT 164930 || |||| ||| |||| ||| | |||| ||||| Sbjct 220335 TAAGACCAGGTAGATTTGAAATTCAAATCGAAAT 220368 >seq3 Length=1232947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 || ||| ||| | | ||| | | || || || |||| |||||||| ||||||||| Sbjct 1155535 GTCAAAGTTAGAATGAGAACAACCAAGATTCCGCAAATTGGTGATAAATTTGCTTCTAGA 1155594 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||| || || ||| | | |||| | || ||||||||||| || | | | Sbjct 1155595 CATGGTCAAAAGGGTACTATTGGGGTTACTTATAGACATGAAGATATGCCATTCAGTGCA 1155654 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| || || ||| | ||||| ||||| |||||| ||||| || ||||| Sbjct 1155655 GAAGGTATTGTCCCAGATTTGATTATCAACCCTCATGCTATTCCATCCCGTATGAC 1155710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595870882740000