Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1 331 1e-85 >seq1 Length=2377843 Score = 331 bits (366), Expect = 1e-85 Identities = 650/954 (68%), Gaps = 32/954 (3%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACA-----TTATCT-TCttt---ttttGACATAA 21176 |||| ||||| |||| || | |||| || || ||| |||| ||| ||||||| Sbjct 1803857 TTTAGAAATCTTCATCAAAAGTGAAAGCACCGGTTTCTCTGTCTTCAGCTTTAGACATAA 1803916 Query 21177 TTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATG 21236 || |||||| |||||| |||||| ||||||||||| || || || || |||| | Sbjct 1803917 CACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGG 1803976 Query 21237 ATATAGATTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGT 21295 | ||| |||||| ||||| ||||| || | | ||| || | ||| || ||||| Sbjct 1803977 AAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAA-ACTTTCTTGTTACCCAAG 1804035 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | ||||||||||||| || ||| |||| | |||||||||||| || ||||| |||||| Sbjct 1804036 GCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATA 1804095 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || | || || |||||||| | || ||| | |||||| | | || |||||| Sbjct 1804096 CCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCA 1804155 Query 21416 ACAATTATATTTATTA----TCCT--AGATGTACTAGGGGGATACAATAATTGTTTAAAC 21469 ||||| || ||| | | || ||||| || | | | ||| || ||| Sbjct 1804156 ACAATAATCTTTTCAACAATTTCTGGAGATGGTCT---GTGTTGCAAG---TGGGAGAAC 1804209 Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529 | |||||| ||||||||| ||| ||||||||||| |||| || |||||||| || || Sbjct 1804210 AACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAA 1804269 Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAA 21589 || ||||| ||||| || ||||||||||| ||||| || || || ||||||| || Sbjct 1804270 GTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTG 1804329 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 |||||||| || |||| |||||||| ||||| |||| |||| | ||| || |||||| Sbjct 1804330 AAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 1804389 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTGTATCAA 21707 || |||||||| ||||||| || |||||| ||||||| ||| | |||| Sbjct 1804390 TCTTGAATCCATTTGATGGCCCATTCAGC--TTTCTTGGTAATACATGGAATGTTTTCAA 1804447 Query 21708 TAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 | || || || |||| || ||| | | || | | | Sbjct 1804448 TGGCATTAAACAAGA-AATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAA 1804506 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||||||| || ||||| ||| || || || || || || || | || Sbjct 1804507 GAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCT 1804566 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 |||| ||| || |||| | |||| || | |||||||||| || || |||||| Sbjct 1804567 TCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCA 1804626 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT--- 21943 || || ||||| || || | | | |||||||| ||| || || ||||| Sbjct 1804627 GAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATTTAATTTG 1804686 Query 21944 TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCA 22003 || |||||||| |||||||| |||||| ||||||||| ||||| ||| || Sbjct 1804687 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCT 1804746 Query 22004 ATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057 || |||||||| | | ||||||| |||| |||| | |||||||| || ||| Sbjct 1804747 TCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACA 1804800 Score = 224 bits (248), Expect = 1e-53 Identities = 595/903 (66%), Gaps = 11/903 (1%) Strand=Plus/Minus Query 21155 TTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAA 21214 |||| |||| |||| ||| | || | |||| |||||| ||||| ||||| || Sbjct 1025756 TTATTTTCTGCTTTTTCCATGACACCAGCTCTTTGGTAATCAGACACTCTCTTTTCAAAG 1025697 Query 21215 AAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTT-TCAGATTT 21273 ||||| || || || |||| |||||| |||||| |||||||||||||| ||| || Sbjct 1025696 AAATTGGTTTTACCGGCCAAGGATATATTTTCCATGAAATCAAATGGATTAGTCACGTTA 1025637 Query 21274 AAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAA-ATTCTATATATT 21332 |||| || || | ||| | | || |||||||| || |||| |||| | ||||| Sbjct 1025636 TAATACTT-ATCATTACCAAAAGCAACCAACAATCTATCGGC-ACAATATTCCACATATT 1025579 Query 21333 GACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAG 21392 ||||||| || |||||||||||||| | ||| || ||||| || | | || | Sbjct 1025578 GACACATCAAATCACAATTCATACCCAACAAAGAAACTGGAAGCGCATCACTGAAGTACT 1025519 Query 21393 ATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGAT 21452 ||||| ||| || |||||| || || ||| ||| | || | | || || Sbjct 1025518 TCTTTTCAATACTAACAGCTTCAGTGATAATCTTTTCTATAATGGAAGGATCCGGCTTAT 1025459 Query 21453 ACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTA 21512 | || | | ||| | ||||| ||| |||| || | |||||| ||||||| | Sbjct 1025458 TCTCCAAGTATGAAAATAGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGA 1025399 Query 21513 TTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTG 21572 | |||||||| || || |||||||| ||||| || ||||| ||||| ||||| || || | Sbjct 1025398 TCAATTCATTTGAGAAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGG 1025339 Query 21573 ACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632 | || |||| || ||||||||||| |||| ||||||||||| || |||| ||| Sbjct 1025338 AAGCGAATGACCCACTGAAGAAAATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTG 1025279 Query 21633 CGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATAC 21692 | | | ||||| || |||||| | ||||| | ||| ||||| ||| Sbjct 1025278 CAAACAAGGCTTCTTCGTCTTGAATCCATCTAATAGCCCAATCTGCTTTTTCACCAATGT 1025219 Query 21693 AATCAATTGTATCAATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNN 21751 | | ||| | ||||| || || || |||| || || | ||| | | | Sbjct 1025218 ATTTAATATTGTCAATGGCGTTGAACAAGA-AATCGGCCTCCTTAGGATCCTTGAAGTAG 1025160 Query 21752 NNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCG 21811 ||| |||| ||||| |||||||| ||| ||||| ||| | Sbjct 1025159 GTTTCAATTAAAAGGGAATATGTTTCTGAATGGATATTTTCCATCATGATCTGGAATTTG 1025100 Query 21812 TAAAAACATCTT-GCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTC 21870 | ||| || ||| || || | | || ||| || | | |||| || | |||||||||| Sbjct 1025099 T-AAACCAGCTTGGCTTCAGGAAGTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTC 1025041 Query 21871 ATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGT-- 21928 ||| ||||| ||||| || |||||||| || || | || || ||| ||| | Sbjct 1025040 ATTGACTATACCATCTGATGCAGCAAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTC 1024981 Query 21929 -TCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGT 21987 || |||| || |||| |||||| |||||||| || || | |||||| | Sbjct 1024980 ATCTTTATTCATTTTATTTTCCCAATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGC 1024921 Query 21988 TGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGG 22047 ||||||||| |||| || || || || | | |||| || ||| |||| ||||||| Sbjct 1024920 TGTCCAAAATGATGCAACAGATTTCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGG 1024861 Query 22048 AAA 22050 ||| Sbjct 1024860 AAA 1024858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899802686000