Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq1 331 1e-85
>seq1
Length=2377843
Score = 331 bits (366), Expect = 1e-85
Identities = 650/954 (68%), Gaps = 32/954 (3%)
Strand=Plus/Plus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACA-----TTATCT-TCttt---ttttGACATAA 21176
|||| ||||| |||| || | |||| || || ||| |||| ||| |||||||
Sbjct 1803857 TTTAGAAATCTTCATCAAAAGTGAAAGCACCGGTTTCTCTGTCTTCAGCTTTAGACATAA 1803916
Query 21177 TTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATG 21236
|| |||||| |||||| |||||| ||||||||||| || || || || |||| |
Sbjct 1803917 CACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGG 1803976
Query 21237 ATATAGATTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGT 21295
| ||| |||||| ||||| ||||| || | | ||| || | ||| || |||||
Sbjct 1803977 AAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAA-ACTTTCTTGTTACCCAAG 1804035
Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355
| ||||||||||||| || ||| |||| | |||||||||||| || ||||| ||||||
Sbjct 1804036 GCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATA 1804095
Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415
|| | || || |||||||| | || ||| | |||||| | | || ||||||
Sbjct 1804096 CCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCA 1804155
Query 21416 ACAATTATATTTATTA----TCCT--AGATGTACTAGGGGGATACAATAATTGTTTAAAC 21469
||||| || ||| | | || ||||| || | | | ||| || |||
Sbjct 1804156 ACAATAATCTTTTCAACAATTTCTGGAGATGGTCT---GTGTTGCAAG---TGGGAGAAC 1804209
Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529
| |||||| ||||||||| ||| ||||||||||| |||| || |||||||| || ||
Sbjct 1804210 AACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAA 1804269
Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAA 21589
|| ||||| ||||| || ||||||||||| ||||| || || || ||||||| ||
Sbjct 1804270 GTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTG 1804329
Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649
|||||||| || |||| |||||||| ||||| |||| |||| | ||| || ||||||
Sbjct 1804330 AAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 1804389
Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTGTATCAA 21707
|| |||||||| ||||||| || |||||| ||||||| ||| | ||||
Sbjct 1804390 TCTTGAATCCATTTGATGGCCCATTCAGC--TTTCTTGGTAATACATGGAATGTTTTCAA 1804447
Query 21708 TAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766
| || || || |||| || ||| | | || | | |
Sbjct 1804448 TGGCATTAAACAAGA-AATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAA 1804506
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||||||| || ||||| ||| || || || || || || || | ||
Sbjct 1804507 GAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCT 1804566
Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
|||| ||| || |||| | |||| || | |||||||||| || || ||||||
Sbjct 1804567 TCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCA 1804626
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT--- 21943
|| || ||||| || || | | | |||||||| ||| || || |||||
Sbjct 1804627 GAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATTTAATTTG 1804686
Query 21944 TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCA 22003
|| |||||||| |||||||| |||||| ||||||||| ||||| ||| ||
Sbjct 1804687 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCT 1804746
Query 22004 ATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057
|| |||||||| | | ||||||| |||| |||| | |||||||| || |||
Sbjct 1804747 TCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACA 1804800
Score = 224 bits (248), Expect = 1e-53
Identities = 595/903 (66%), Gaps = 11/903 (1%)
Strand=Plus/Minus
Query 21155 TTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAA 21214
|||| |||| |||| ||| | || | |||| |||||| ||||| ||||| ||
Sbjct 1025756 TTATTTTCTGCTTTTTCCATGACACCAGCTCTTTGGTAATCAGACACTCTCTTTTCAAAG 1025697
Query 21215 AAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTT-TCAGATTT 21273
||||| || || || |||| |||||| |||||| |||||||||||||| ||| ||
Sbjct 1025696 AAATTGGTTTTACCGGCCAAGGATATATTTTCCATGAAATCAAATGGATTAGTCACGTTA 1025637
Query 21274 AAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAA-ATTCTATATATT 21332
|||| || || | ||| | | || |||||||| || |||| |||| | |||||
Sbjct 1025636 TAATACTT-ATCATTACCAAAAGCAACCAACAATCTATCGGC-ACAATATTCCACATATT 1025579
Query 21333 GACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAG 21392
||||||| || |||||||||||||| | ||| || ||||| || | | || |
Sbjct 1025578 GACACATCAAATCACAATTCATACCCAACAAAGAAACTGGAAGCGCATCACTGAAGTACT 1025519
Query 21393 ATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGAT 21452
||||| ||| || |||||| || || ||| ||| | || | | || ||
Sbjct 1025518 TCTTTTCAATACTAACAGCTTCAGTGATAATCTTTTCTATAATGGAAGGATCCGGCTTAT 1025459
Query 21453 ACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTA 21512
| || | | ||| | ||||| ||| |||| || | |||||| ||||||| |
Sbjct 1025458 TCTCCAAGTATGAAAATAGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGA 1025399
Query 21513 TTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTG 21572
| |||||||| || || |||||||| ||||| || ||||| ||||| ||||| || || |
Sbjct 1025398 TCAATTCATTTGAGAAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGG 1025339
Query 21573 ACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632
| || |||| || ||||||||||| |||| ||||||||||| || |||| |||
Sbjct 1025338 AAGCGAATGACCCACTGAAGAAAATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTG 1025279
Query 21633 CGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATAC 21692
| | | ||||| || |||||| | ||||| | ||| ||||| |||
Sbjct 1025278 CAAACAAGGCTTCTTCGTCTTGAATCCATCTAATAGCCCAATCTGCTTTTTCACCAATGT 1025219
Query 21693 AATCAATTGTATCAATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNN 21751
| | ||| | ||||| || || || |||| || || | ||| | | |
Sbjct 1025218 ATTTAATATTGTCAATGGCGTTGAACAAGA-AATCGGCCTCCTTAGGATCCTTGAAGTAG 1025160
Query 21752 NNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCG 21811
||| |||| ||||| |||||||| ||| ||||| ||| |
Sbjct 1025159 GTTTCAATTAAAAGGGAATATGTTTCTGAATGGATATTTTCCATCATGATCTGGAATTTG 1025100
Query 21812 TAAAAACATCTT-GCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTC 21870
| ||| || ||| || || | | || ||| || | | |||| || | ||||||||||
Sbjct 1025099 T-AAACCAGCTTGGCTTCAGGAAGTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTC 1025041
Query 21871 ATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGT-- 21928
||| ||||| ||||| || |||||||| || || | || || ||| ||| |
Sbjct 1025040 ATTGACTATACCATCTGATGCAGCAAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTC 1024981
Query 21929 -TCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGT 21987
|| |||| || |||| |||||| |||||||| || || | |||||| |
Sbjct 1024980 ATCTTTATTCATTTTATTTTCCCAATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGC 1024921
Query 21988 TGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGG 22047
||||||||| |||| || || || || | | |||| || ||| |||| |||||||
Sbjct 1024920 TGTCCAAAATGATGCAACAGATTTCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGG 1024861
Query 22048 AAA 22050
|||
Sbjct 1024860 AAA 1024858
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531899802686000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |