Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 118 3e-21 seq21 100 7e-16 >seq1 Length=2377843 Score = 118 bits (130), Expect = 3e-21 Identities = 241/347 (69%), Gaps = 12/347 (3%) Strand=Plus/Minus Query 111372 TGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAA--TGTAAAAATTT 111429 ||||||||| ||| || |||| || || || | ||| ||| ||| ||||||| Sbjct 1090859 TGGTTTATTGCTGGATCAACCGATGCTAA--AATTTTAACCAACAAAGGTGTTAAAATTT 1090802 Query 111430 GGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAG--A 111487 |||| || |||||||| ||||| ||| ||||| |||| | ||| | || || | | Sbjct 1090801 GGGAAGGTAATGGATCTCGTGAGTTTTTAGATA-AGTTAGGATTGACT-CATCGTCGTGA 1090744 Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA-A 111546 ||||||| | ||||||||||| || || |||||| | ||||||||||| || || ||| | Sbjct 1090743 AGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAGACACTTTGGTGCTGAATATAAAGA 1090684 Query 111547 CCATGCACGACTCA-TATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAA 111605 || | | || | ||| | ||| || |||||| || || || ||||| | || Sbjct 1090683 TTGTG-ATG-CTGATTATACTGGACAAGGTTATGATCAGTTGCAAGATATCATTAAGAAA 1090626 Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665 | ||| ||||||| | | | | || || |||||||| ||||| ||| | || Sbjct 1090625 TTAAAGTCCAACCCATATGATAGAAGAATAATCATGAGTGCCTGGAATCCACCAGATTTT 1090566 Query 111666 GAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT 111712 || |||||||| | || ||||||||| | | || || || ||||| Sbjct 1090565 GATAAAATGGCTTTACCTCCATGTCATGTCTTTTGTCAATTCTATGT 1090519 Score = 104 bits (114), Expect = 6e-17 Identities = 303/465 (65%), Gaps = 29/465 (6%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 |||||||||| |||||||||||||||| ||| |||| | | || || ||| | Sbjct 1025293 GCATTTGCTGCTATTGAAGGCATTTTCTTCAGTGGGTCATTCGCTTCCATTTTCTGGTTG 1025352 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 |||||| | | | ||||| ||| |||| || |||||||| || || | | || || Sbjct 1025353 AAAAAAAGAGGGTTGATGCCAGGTTTAACTTTCTCAAATGAATTGATCTGTAGGGACGAA 1025412 Query 22621 GGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATA---------TCATTCAT 22671 ||| |||| ||||||| ||| ||| | |||| | ||||| | | | Sbjct 1025413 GGTATTCACACCGATTATGCTTGTTTACTATTT-----TCATACTTGGAGAATAAGCCGG 1025467 Query 22672 AAACTTCCAT-AT-GAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTC 22729 | ||||||| || |||| | ||||| || | || ||| ||||| Sbjct 1025468 ATCCTTCCATTATAGAAA---------AGATTATCACTGAAGCTGTTAGTATTGAAAAG- 1025517 Query 22730 TATTTATTT--GCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAG 22787 | || || | || ||| | ||||| | | | ||||| ||| || | ||| | Sbjct 1025518 -AAGTACTTCAGTGATGCGCTTCCAGTTTCTTTGTTGGGTATGAATTGTGATTTGATGTG 1025576 Query 22788 TACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847 | |||| | ||| | ||| ||| | | || || | | ||| ||| ||| |||| Sbjct 1025577 TCAATATGTGGAATATTGTGCCGATAGATTGTTGGTTGCTTTTGGTAATGATAAGTATTA 1025636 Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907 |||||| |||||||||||| | |||||| ||| || | | || || |||||||| Sbjct 1025637 TAACGTGACTAATCCATTTGATTTCATGGAAAATATATCCTTGGCCGGTAAAACCAATTT 1025696 Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGA 22952 ||| ||||| ||||| ||| ||||||| ||| ||||| ||||| Sbjct 1025697 CTTTGAAAAGAGAGTGTCTGATTACCAAAGAGCTGGTGTCATGGA 1025741 >seq21 Length=244291 Score = 100 bits (110), Expect = 7e-16 Identities = 252/371 (68%), Gaps = 14/371 (4%) Strand=Plus/Minus Query 363599 TGTCTTCTTGCTTTCTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACA 363657 ||||||| || |||||| || ||||| || ||||| || || || |||| | | || Sbjct 8689 TGTCTTCCTG-TTTCTTGATAGCTATGAAAGATGATTCAATAGATGGAATCTATAAAACC 8631 Query 363658 CTTAAGAATTGTGCTCTTATTTCCAA-GAATGCAGGCGGAATTGGTGTATCGATCCACA- 363715 ||| | | | || | |||||||| | || |||| ||||||||| ||| || ||| Sbjct 8630 CTTCACGAATCAGCATTAATTTCCAAAGCAT-CAGGGGGAATTGGT--ATCCATGTACAT 8574 Query 363716 -ATGTTCGTGCACA--GAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTG 363771 | |||||| | | | || || ||| || || | ||||| | ||||| | Sbjct 8573 GAAGTTCGTTCCAATGGTTCA--TATATTGCTGGTACCAATGGGATTG-CAAATGGATTA 8517 Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 ||||| ||| | ||||| ||| |||| ||||| | || |||||||||||||| || || Sbjct 8516 GTTCCAATGTTACGTGTTTTTAACAACACTGCACGATATGTCGACCAGGGTGGTGGTAAA 8457 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 || || || ||||| || ||| | || ||| |||| |||||||||||| || | Sbjct 8456 CGTCCTGGTGCTTTTGCGATTTATATTGAACCTTGGCATGGCGATATTTTTGACATTTTA 8397 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 ||| | | ||||| |||| || ||||| | | | ||| | ||||||| | | Sbjct 8396 GAGATGAGAAAAAATCATGGAAGTGAAGAATTAAGAACTAGAGATTTATTCTATGGATTA 8337 Query 363952 TGGGTTTCTGA 363962 ||| || |||| Sbjct 8336 TGGATTCCTGA 8326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351095117300