Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1 250 3e-61
>seq1
Length=2377843
Score = 250 bits (276), Expect = 3e-61
Identities = 623/935 (67%), Gaps = 31/935 (3%)
Strand=Plus/Plus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
|||||||||| ||||||||| || |||| | ||||| || || || || || || |
Sbjct 1803912 CATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGC 1803971
Query 92850 CAAAGATATCGAATTCACTAGT--GATTGGATTCTTGGCGTTATAA---TACTTTTCACC 92904
||| || || | || | || ||| || | | || ||| | ||| | |||
Sbjct 1803972 CAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCTTGTTACC 1804031
Query 92905 GATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACA 92964
||| | | |||||||||||||| ||| |||| | || ||| ||||||| |||||
Sbjct 1804032 ---CAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACA 1804088
Query 92965 ATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024
||||| || | | | || || ||||| || || || | ||||| || | ||||
Sbjct 1804089 GTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAAC 1804148
Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTT-----GGTGGTTTTTGTACGACATAA 93079
||||| ||| | | || || | || |||| | |||| | ||| | |
Sbjct 1804149 AGCTTCAA-CAATAAT-CTTTT---CAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGG 1804203
Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139
| ||| || || ||||| || |||||||||||||| |||| | ||||| ||||||
Sbjct 1804204 GAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTG 1804263
Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199
||| || |||||||| | || |||| || || | ||| || || |||||||| |
Sbjct 1804264 GAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAA 1804323
Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259
||| || || |||||||| | || ||||| || || | | ||| ||| | ||
Sbjct 1804324 CCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCA 1804383
Query 93260 GAATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318
||| | || |||||||| | ||||| || ||||| || ||||||| || | |
Sbjct 1804384 TCTTTA-TCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTT 1804442
Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378
||| || || ||||| | | |||| || | | ||| | || || || |||||
Sbjct 1804443 TTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAA 1804502
Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438
| |||||||||||||||||| | || ||||| |||||||| || ||||| || |
Sbjct 1804503 TAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTT 1804562
Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498
|||||| | | || ||||| |||||| | || | | |||||| || |||||
Sbjct 1804563 AGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACC 1804622
Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTT----ATAAAATGTTTCTCATCATC-T 93553
||| || || || ||||| || || | || | | ||||| | | |||| || |
Sbjct 1804623 ATCAGAAGCAGCGAAAAAGGCTAAAA----CTCTAGAAACAAAATATCTTTCATTGTCAT 1804678
Query 93554 TTAA--GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAA 93611
|||| || | |||||| | |||||| | ||| |||||||| |||||| |
Sbjct 1804679 TTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGA 1804738
Query 93612 ACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGA 93671
| || ||||| |||||||| || | || ||| || || ||||||| ||||||||| || |
Sbjct 1804739 AGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAA 1804798
Query 93672 CAAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706
|| ||||| ||| |||| || ||| || |||
Sbjct 1804799 CATAACGACGTTTGTTTTCTTGTAATAATGGTTCT 1804833
Score = 187 bits (206), Expect = 3e-42
Identities = 591/895 (66%), Gaps = 31/895 (3%)
Strand=Plus/Minus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
||| |||||| | ||||||| || ||| | |||||||||||||| || || || |
Sbjct 1025739 CATGACACCAGCTCTTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGC 1025680
Query 92850 CAAAGATATCGAATTCACTAGTGAT----TGGATTCTTGGCGTTATAATACTTTTCACCG 92905
||| ||||| | || | | || |||||| | ||||||||||||| |||
Sbjct 1025679 CAAGGATAT--ATTTTCCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCATTA 1025622
Query 92906 ATCAACTCGTACAATAATCTATCAGCTACAA-ATTCTATGTACTGAGACATCAAATCACA 92964
|| | ||| |||||||| || |||| |||| | || ||| |||||||||||||
Sbjct 1025621 CCAAAAGCAACCAACAATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACA 1025563
Query 92965 ATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024
|||||| || | | | || || || || || | ||| | | || || || |||
Sbjct 1025562 ATTCATACCCAACAAAGAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAAC 1025503
Query 93025 GGCTTCTTTCAAGAT---TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT 93081
||||| | | || |||||| | | || || || || | | | || |
Sbjct 1025502 AGCTTCAGTGATAATCTTTTCTATAATGGAAGGATCCGGC--TTATTCTCCAAG-TA--T 1025448
Query 93082 GTACAT--TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139
| | || ||| || ||| | ||||| || | ||||||||| | | ||||| |||||
Sbjct 1025447 GAAAATAGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTT 1025388
Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199
||| ||||||||||| | || |||| ||| || | ||| || || ||||| ||
Sbjct 1025387 GAGAAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGAC 1025328
Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259
||| || || || ||||| | || ||||||||||| | | ||| ||||| ||
Sbjct 1025327 CCACTGAAGAAAATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGC- 1025269
Query 93260 GAATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318
|| | || |||||| | | ||||||||| ||||||| ||| | || | |
Sbjct 1025268 TTCTTCGTCTTGAATCCATCTAATAGCCCAATCTGCTTTTTCACCAAT-GTATTTAATAT 1025210
Query 93319 T-TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377
| || || ||||| || | | |||| ||| | | ||| | ||| || || ||||
Sbjct 1025209 TGTCAATGGCGTTGAACAAGAAATCGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTA 1025150
Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437
| || ||||| |||| ||||||| ||| ||||| || |||||| ||| || || |
Sbjct 1025149 AAAGGGAATATGTTTCTGAATGGATATTTTCCATCATGATCTGGAATTTGTA-AACCAGC 1025091
Query 93438 -TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496
| ||||| | | | ||||| | |||| | || || | |||||||||||||||
Sbjct 1025090 TTGGCTTCAGGAAGTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATA 1025031
Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATA--TATGCTTTATAAAATGTTTC-TCATCAT-- 93551
||||| ||||| |||||||| || || | || | ||||| |||| || | ||
Sbjct 1025030 CCATCTGATGCAGCAAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTC 1024971
Query 93552 CTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAA 93611
||| | || |||||||| | |||||| | || | |||||| | |||||||
Sbjct 1024970 ATTTTA--TTTTCCCAATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAA 1024913
Query 93612 ACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAA 93666
| ||||| | | ||| ||||| | | ||| || || |||||| ||||||||
Sbjct 1024912 ATGATGCAACAGATTTCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAA 1024858
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556859755886000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |