Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 250 3e-61 >seq1 Length=2377843 Score = 250 bits (276), Expect = 3e-61 Identities = 623/935 (67%), Gaps = 31/935 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| ||||||||| || |||| | ||||| || || || || || || | Sbjct 1803912 CATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGC 1803971 Query 92850 CAAAGATATCGAATTCACTAGT--GATTGGATTCTTGGCGTTATAA---TACTTTTCACC 92904 ||| || || | || | || ||| || | | || ||| | ||| | ||| Sbjct 1803972 CAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCTTGTTACC 1804031 Query 92905 GATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACA 92964 ||| | | |||||||||||||| ||| |||| | || ||| ||||||| ||||| Sbjct 1804032 ---CAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACA 1804088 Query 92965 ATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 ||||| || | | | || || ||||| || || || | ||||| || | |||| Sbjct 1804089 GTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAAC 1804148 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTT-----GGTGGTTTTTGTACGACATAA 93079 ||||| ||| | | || || | || |||| | |||| | ||| | | Sbjct 1804149 AGCTTCAA-CAATAAT-CTTTT---CAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGG 1804203 Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 | ||| || || ||||| || |||||||||||||| |||| | ||||| |||||| Sbjct 1804204 GAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTG 1804263 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||| || |||||||| | || |||| || || | ||| || || |||||||| | Sbjct 1804264 GAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAA 1804323 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||| || || |||||||| | || ||||| || || | | ||| ||| | || Sbjct 1804324 CCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCA 1804383 Query 93260 GAATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 ||| | || |||||||| | ||||| || ||||| || ||||||| || | | Sbjct 1804384 TCTTTA-TCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTT 1804442 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| || || ||||| | | |||| || | | ||| | || || || ||||| Sbjct 1804443 TTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAA 1804502 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 | |||||||||||||||||| | || ||||| |||||||| || ||||| || | Sbjct 1804503 TAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTT 1804562 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 |||||| | | || ||||| |||||| | || | | |||||| || ||||| Sbjct 1804563 AGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACC 1804622 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTT----ATAAAATGTTTCTCATCATC-T 93553 ||| || || || ||||| || || | || | | ||||| | | |||| || | Sbjct 1804623 ATCAGAAGCAGCGAAAAAGGCTAAAA----CTCTAGAAACAAAATATCTTTCATTGTCAT 1804678 Query 93554 TTAA--GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAA 93611 |||| || | |||||| | |||||| | ||| |||||||| |||||| | Sbjct 1804679 TTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGA 1804738 Query 93612 ACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGA 93671 | || ||||| |||||||| || | || ||| || || ||||||| ||||||||| || | Sbjct 1804739 AGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAA 1804798 Query 93672 CAAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 || ||||| ||| |||| || ||| || ||| Sbjct 1804799 CATAACGACGTTTGTTTTCTTGTAATAATGGTTCT 1804833 Score = 187 bits (206), Expect = 3e-42 Identities = 591/895 (66%), Gaps = 31/895 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| |||||| | ||||||| || ||| | |||||||||||||| || || || | Sbjct 1025739 CATGACACCAGCTCTTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGC 1025680 Query 92850 CAAAGATATCGAATTCACTAGTGAT----TGGATTCTTGGCGTTATAATACTTTTCACCG 92905 ||| ||||| | || | | || |||||| | ||||||||||||| ||| Sbjct 1025679 CAAGGATAT--ATTTTCCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCATTA 1025622 Query 92906 ATCAACTCGTACAATAATCTATCAGCTACAA-ATTCTATGTACTGAGACATCAAATCACA 92964 || | ||| |||||||| || |||| |||| | || ||| ||||||||||||| Sbjct 1025621 CCAAAAGCAACCAACAATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACA 1025563 Query 92965 ATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 |||||| || | | | || || || || || | ||| | | || || || ||| Sbjct 1025562 ATTCATACCCAACAAAGAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAAC 1025503 Query 93025 GGCTTCTTTCAAGAT---TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT 93081 ||||| | | || |||||| | | || || || || | | | || | Sbjct 1025502 AGCTTCAGTGATAATCTTTTCTATAATGGAAGGATCCGGC--TTATTCTCCAAG-TA--T 1025448 Query 93082 GTACAT--TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 | | || ||| || ||| | ||||| || | ||||||||| | | ||||| ||||| Sbjct 1025447 GAAAATAGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTT 1025388 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||| ||||||||||| | || |||| ||| || | ||| || || ||||| || Sbjct 1025387 GAGAAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGAC 1025328 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||| || || || ||||| | || ||||||||||| | | ||| ||||| || Sbjct 1025327 CCACTGAAGAAAATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGC- 1025269 Query 93260 GAATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | || |||||| | | ||||||||| ||||||| ||| | || | | Sbjct 1025268 TTCTTCGTCTTGAATCCATCTAATAGCCCAATCTGCTTTTTCACCAAT-GTATTTAATAT 1025210 Query 93319 T-TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | || || ||||| || | | |||| ||| | | ||| | ||| || || |||| Sbjct 1025209 TGTCAATGGCGTTGAACAAGAAATCGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTA 1025150 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 | || ||||| |||| ||||||| ||| ||||| || |||||| ||| || || | Sbjct 1025149 AAAGGGAATATGTTTCTGAATGGATATTTTCCATCATGATCTGGAATTTGTA-AACCAGC 1025091 Query 93438 -TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | ||||| | | | ||||| | |||| | || || | ||||||||||||||| Sbjct 1025090 TTGGCTTCAGGAAGTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATA 1025031 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATA--TATGCTTTATAAAATGTTTC-TCATCAT-- 93551 ||||| ||||| |||||||| || || | || | ||||| |||| || | || Sbjct 1025030 CCATCTGATGCAGCAAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTC 1024971 Query 93552 CTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAA 93611 ||| | || |||||||| | |||||| | || | |||||| | ||||||| Sbjct 1024970 ATTTTA--TTTTCCCAATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAA 1024913 Query 93612 ACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAA 93666 | ||||| | | ||| ||||| | | ||| || || |||||| |||||||| Sbjct 1024912 ATGATGCAACAGATTTCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAA 1024858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859755886000