Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 309 4e-79 seq21 156 5e-33 seq3 87.8 2e-12 >seq1 Length=2377843 Score = 309 bits (342), Expect = 4e-79 Identities = 1059/1626 (65%), Gaps = 45/1626 (3%) Strand=Plus/Minus Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 ||||| || ||||| |||||||| |||||||| |||||| | |||| | ||||| Sbjct 1848991 TTCAATGCCGGTACCCCAAGACCACAAATGTCTTCATGTTTCTTGCTTGCTATGAAGGAT 1848932 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 ||||| || | || ||||||| ||| | | |||||| ||| || ||| | ||| Sbjct 1848931 GATTCCATTGAAGGTATTTACGATACTTTGAAATCATGTGCTTTAATTTCCAAGAGTGCT 1848872 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTAC 111907 |||||||| || |||||||||| | | | ||| | || || ||| ||||| Sbjct 1848871 GGTGGTATTGGTTTGCACATCCACAACATTCGTTCCA-CTGGTGCTTACATTGCTGGTAC 1848813 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 |||||| || | ||||||||||| ||| | | || || ||| ||| || || || Sbjct 1848812 TAATGGTACTTCCAACGGTATTATTCCTATGGTCAGAGTTTTCAACAACACTGCTCGTTA 1848753 Query 111968 TGTAAACCAAGCTGGGCGTCGCAAGGGATC------TATCGCAGTCTATCTTGAGCCATG 112021 ||| | |||| ||| | |||| || | | | || | || | || ||||| Sbjct 1848752 TGTTGATCAAGGTGG---TAACAAGAGACCAGGTGCTTTTGCTTTATACTTGGAACCATG 1848696 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 |||| |||||| | || || | || | | ||||| ||| | || || | Sbjct 1848695 GCACAGTGATATCTTTGACTTTATCGATATTAGAAAGAACCACGGTAAAGAAGAAAT-CA 1848637 Query 112082 GTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||| | || | ||| | ||| | ||||| |||||| | ||||||||||||||||| Sbjct 1848636 GAGCCAGAGACTTGTTCCCAGCTTTGTGGATCCCAGATTTGTTCATGAAGAGAGTTGAAC 1848577 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 | | || | ||| || | || | |||| | | || || ||| | || |||| | | Sbjct 1848576 AAAACGGTGACTGGACTTTGTTCTCTCCAAATGAAGCTCCAGGTTTGTCAGATGTCTACG 1848517 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGG 112260 |||| || ||||||| | || || | ||||| | || | || | | || Sbjct 1848516 GTGATGAATTTGAAGAATTATATACCAGATACGAAAAGGAGAACCGTGGTAGACAAACCA 1848457 Query 112261 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGT-CTCAAACCGAGACTGGTACACCA 112319 | ||| | | ||| | ||||| || ||| | |||||||| |||||||| ||| Sbjct 1848456 TCAAAGCCCAAAAATTATGGTACGCTAT-CTTGAGTGCCCAAACCGAAACTGGTACTCCA 1848398 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | |||| | || ||||| || |||||| |||| ||| ||||||||||||||||| ||| Sbjct 1848397 TTTATGTTGTATAAAGATGCTTGTAACACCAAGACTAACCAAAAGAATTTGGGTGTCATC 1848338 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || ||||||| | ||| ||||| | |||| | | | |||||| ||||| Sbjct 1848337 AAATCTTCCAACTTGTGTTGTGAAATTGTTGAATATTCTGCTCCAGATGAAGTTGCTGTT 1848278 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACATTTGA 112498 |||||| | || || || || | || | ||| || | || || | | | ||| Sbjct 1848277 TGTAACTTGGCTTCCATTGCATTGCCATCTTTTGTTGAACACGATGAAAGCAATACTTGG 1848218 Query 112499 T-----TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553 | | ||||||| | || |||||||| ||| |||||| ||| | ||||||||| Sbjct 1848217 TATAACTTTGAAAAATTGCATGAAGTTACTAAAGTTGTCACTCGTAACTTGAACAGAGTT 1848158 Query 112554 ATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 || ||| | || | ||||| ||| ||| ||| | |||||||||||||||| | || Sbjct 1848157 ATCGATCGTAACTACTACCCAGTTCCAGAA-GCTGAAAGATCTAATATGAGACACAGACC 1848099 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTG---TCGCCACGCAT 112668 ||||| | | ||||| |||||| | || |||| || || |||||| | || ||| Sbjct 1848098 AATTGCTTTGGGTGTTCAAGGTTTAGCTGATGCTTTTATGTCTTTGAGATTGC----CAT 1848043 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 ||||||| | ||||| | ||| | || | || ||||| || || || || || | Sbjct 1848042 TTGATTCTCAAGAAGCTAGAGAATTAAACATTCAAATCTTTGAAACCATTTACCATGCTG 1847983 Query 112729 CTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788 || |||| | | || || || | | || ||| ||||||| | |||| Sbjct 1847982 CTGTTGAATCTTCTATTGAATTAGCTGCTGAAGAAGGTGTCTATGAAAGTTACCCAGGTT 1847923 Query 112789 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 112848 |||||||||| ||||| | | |||||||| ||| |||| | ||||| || | | Sbjct 1847922 CTCCAGCTTCTCAAGGTTTATTACAATTTGACTTGT-GGAACAGAAAACCAA-CTGAATT 1847865 Query 112849 A--CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 | || ||||| || | || || || | | ||| | | ||| | || Sbjct 1847864 ATGGGATTGGGATACTTTGAAACAAAAGATGGCCAAACATGGTTTGAGAAACTCCTTGTT 1847805 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | | || ||||||||||| || || || |||||||||||||||| |||||||| || || Sbjct 1847804 GGTTGCTCCAATGCCAACTGCTTCTACTTCACAAATCTTGGGTAACAATGAATGTTTCGA 1847745 Query 112967 ACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCA 113025 ||| ||||| | ||||| || ||| |||||| | || || || || ||||||| Sbjct 1847744 ACCTTACACTTCCAACATTTACTCT-AGAAGAGTTTTGGCTGGTGAATTCCAAATTGTCA 1847686 Query 113026 A--CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA 113083 | || | | | || | || | || | ||| | ||| | | ||||||| Sbjct 1847685 ATCCATACTTGT--TGAAGGATTTGGTTGATTTGGGTATTTGGAATGATGCTATGAAGAG 1847628 Query 113084 TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAA 113143 | ||| | |||||| || ||| | | | || ||||||||||| || Sbjct 1847627 TAACATTATTTCCAACAATGGTTCGATCCAAGGTTTGCCAAACATCCCAGATGAAATCAA 1847568 Query 113144 GAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCA 113201 | |||||| || |||||||||| ||| | || || ||||||| ||||| || Sbjct 1847567 GGCTTTGTACAAGACTGTTTGGGAAATTTCACAA--AAACATATCATTGATATGGCTGCT 1847510 Query 113202 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACG 113261 ||| | | | |||||||||||| |||| | ||||| | ||| || |||||| Sbjct 1847509 GATAGAGCTGCTTTCATTGATCAATCTCAATCTTTGAATATTCACATTAAAGATCCAACT 1847450 Query 113262 ATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 113321 ||| || | | |||||| | || |||||||||||||| | || || || ||| Sbjct 1847449 ATGGGTAAATTGACAAGTATGCATTTCTATGGTTGGAAGAAGGGTTTGAAGACTGGTATG 1847390 Query 113322 TATTAC 113327 || ||| Sbjct 1847389 TACTAC 1847384 Score = 96.9 bits (106), Expect = 4e-15 Identities = 517/811 (64%), Gaps = 29/811 (4%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 |||||| |||||| || ||| | || |||||||| |||||||| | ||||| Sbjct 1804736 TGGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATTAAAT 1804677 Query 101874 GAAAATGAAAAGAAATTCATAAAATACA-TCCTGGCATTCTTTGCTGGGTCCGATGGAAT 101932 || ||||||| || ||| || | | | || || || |||| || ||||| || Sbjct 1804676 GACAATGAAA-GATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTAT 1804618 Query 101933 TGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATC 101992 |||| ||| || | | | | |||||| ||| || || ||| | ||||| | ||| Sbjct 1804617 TGTTGGTGAAAACTTGATTGAAAACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTAAATC 1804558 Query 101993 TTTCTATGCGTATCAATGTCATAATG-AAATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||||| || || | |||| ||| ||| | ||| || | || | | | | Sbjct 1804557 ATTCTATG-GTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTATTAA 1804499 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCT-----TTGAAGCCATCCA 102106 | || | ||| |||| || | | ||||||| | | | || | ||||| | Sbjct 1804498 TTGAAACTTATGTTAAAGA-----CCCACAAGAAGCTGATTTCTTGTTTAATGCCATTGA 1804444 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG-TTTGATACAAAGT 102165 || ||||||||||| |||||||| || ||||| || || ||| || | | |||| Sbjct 1804443 AAACATTCCATGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGA 1804384 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 || || | |||||| || | | || ||||| | |||| ||||| |||||| || Sbjct 1804383 TGC-TTTATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTG 1804325 Query 102226 GTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 |||| || ||| |||| | ||| | || ||| ||||| | ||||||||| | ||| Sbjct 1804324 GTTCATT-TGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTC 1804266 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTT 102342 ||||| || | |||| | | || || || | || || ||||| | | | || Sbjct 1804265 TCCAATGAATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTC 1804206 Query 102343 TCAAATTATTGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCG 102402 || | |||| | |||| | | || | | || | ||| || ||||| | Sbjct 1804205 TCCCA--CTTGCAACACAGACCATCTCCAGAAATTGTTGAAAAGATTATTGTTGAAGCTG 1804148 Query 102403 TTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATT 102462 |||| |||| || | || | ||||| |||||| || | | |||||||| | Sbjct 1804147 TTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACT 1804088 Query 102463 CTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGG 102522 ||| ||||| ||||| |||| ||||| |||||||||| || | | ||| Sbjct 1804087 GTGACTTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATT--ATTTGCCTTGGG 1804030 Query 102523 TGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGA 102580 | | || ||| || | || ||||| || |||||||| || ||| | | | Sbjct 1804029 TAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGGC 1803970 Query 102581 CGGGAAGACAAACTTCTTCGAAAAGAGGGTT 102611 || || || ||||| ||||||||||| ||| Sbjct 1803969 TGGTAAAACCAACTTTTTCGAAAAGAGAGTT 1803939 >seq21 Length=244291 Score = 156 bits (172), Expect = 5e-33 Identities = 643/993 (65%), Gaps = 47/993 (5%) Strand=Plus/Minus Query 112283 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTG 112342 ||| ||| | | || ||||| || || ||| |||||||||||||| ||||| ||||| Sbjct 8163 AGCAATTTTAGAATCACAAACTGAAACCGGTGGCCCATATATGCTTTATAAAGATGCCTG 8104 Query 112343 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGA 112402 ||| |||| ||||| || || | ||| |||||| || || | || || Sbjct 8103 TAATGAAAAATCAAATCAGAAAAACCTTGGTACAATCAAGTCGTCAAATTTGTGCTGTGA 8044 Query 112403 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 112462 ||| | |||| | || ||| || || ||||||||||| |||| || | || | Sbjct 8043 AATTGTTGAATATTCATCACCAGAAGAAACAGCTGTGTGTAATCTCGGGTCCCTTGCATT 7984 Query 112463 CCCCAAGTATGTGGATCCA---GA-GACAAAGACAT-----TTGATTATGAAAAACTCCA 112513 || | |||| || | || || || ||| || |||||| || ||||| || Sbjct 7983 ACCGACGTATTTGAAAACATCCGATGATGAAGTAATAGAGTTTGATTTCGAGAAACTACA 7924 Query 112514 CGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC 112573 || || || | | |||||| | |||| ||| || ||| || || || || Sbjct 7923 TTCTGTCACCAAGGTGTTGGCTAAAAACTTGAACAAAGTGATCGATGTAACATTATATCC 7864 Query 112574 CGTTGAGACTGCTCGTAAA-TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAG 112632 |||||||| || || | | || |||| | |||||||||||| | ||||| |||| Sbjct 7863 TGTTGAGACAGC-CGAATACTCAAATAAACGTAACCGTCCAATTGCCTTGGGTGTTCAAG 7805 Query 112633 GTCTCGCGGATGTATT---CATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGG 112689 | | || ||| |||| | ||| | || || ||||||| || || | || | | Sbjct 7804 GGTTAGCAGATTTATTTGCCGAACTTAG--GCTAC-CATTTGAATCAGAAGCTGCTAGGA 7748 Query 112690 AAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG--AGTTCGGA 112747 || | ||| | |||||||| ||||| || || || |||||||| || |||| || Sbjct 7747 AATTAAATATTCAGATATTTGAAACAATCTACCATGCGGCTCTTGAAGCTTCAGTT--GA 7690 Query 112748 GTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGT 112807 || | || || ||||||||||| ||| | || || || || || |||| | Sbjct 7689 ATTATCTATTCAAGACGGACCATATGAAACTTTTCAAGGATCACCTGCATCTGAAGGTAT 7630 Query 112808 GCTTCAATTTGATATGTGG---GAAGGTGAGACCAAGCTTCACTACGACTGGGACGCTCT 112864 || ||||||||||||||| | | | | ||| | ||||||||| | || Sbjct 7629 TCTACAATTTGATATGTGGAATCATACTCCGTCTAAGAT---GTACGACTGGAATAAACT 7573 Query 112865 CAAGGAACGCA-TCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAA 112923 ||| ||| ||| |||| | |||| | | || |||||| | ||||||||||| | Sbjct 7572 CAAAGAAAGCATTCAAAAATTTGGGT-TAAGAAATTCCCTTTTGGTTGCACCAATGCCTA 7514 Query 112924 CAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACA 112983 |||| |||||| ||||||| || || ||||||||| |||||||| || || | || Sbjct 7513 CAGCTTCCACCTCACAAATTTTAGGATTTAATGAATGTTTTGAACCTTATACATCAAATT 7454 Query 112984 TCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATG 113043 | ||| | || | | |||||||| | | || || ||| || | | | | Sbjct 7453 TATATAACCGTAGGGTGTTGTCAGGAGAGTTCCAGGTGGTTAATAAGTATTTAATTAAAG 7394 Query 113044 ACCTCAAAGAGATTGGTCTCTGG---TC--CAAGGATATGAAGGATCTCATGGTGAAAGC 113098 || | | || | ||| | ||| || ||| || | || | ||||| || || Sbjct 7393 ACTTGATGGATTTGGGTATTTGGAATTCAGCAATGAGA--AATAAAATCATGATGGAA-- 7338 Query 113099 GGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCAC 113158 ||| |||||||||||||| | ||||| | || || || | ||||| || Sbjct 7337 -AATGGCTCCATTCAAAATATACAGAGCATTCCCAAAGACATCAAAGAATTGTATAAAAC 7279 Query 113159 AGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTT 113215 ||| |||||||| | | | ||| | | ||||| ||||| || ||| | ||| || Sbjct 7278 AGTGTGGGAAATTTCCCAAA--AAGTA-ATAATTGATATGGCAGCTGATAGAGGTAAATT 7222 Query 113216 CATTGATCAAAGTCAAAGTATGAATCTATTCAT 113248 ||||||||| ||||||||||| ||||||| Sbjct 7221 TATTGATCAACTGCAAAGTATGAA--TATTCAT 7191 >seq3 Length=1232947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 163547 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGCG 163606 ||||| | ||||| ||||| ||||| | ||||| ||||| ||||| |||||| Sbjct 1215398 TATGGTAGAGTTGCTCCACGTTCTGGATTAGCTGTTAAACATGGTATTTCTACTGGTGCT 1215457 Query 163607 GGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATGGAGAC 163666 |||||||||||| | || || |||||||| ||||| ||| | || |||||| | || Sbjct 1215458 GGTGTTATTGATGCTGATTATCGTGGTGAAGTTAAAGTTGTTTTATTTAATCATAGTGAA 1215517 Query 163667 AAAGACTTTGA 163677 ||||| ||||| Sbjct 1215518 AAAGATTTTGA 1215528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741236108000