Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 232 8e-56 seq21 114 2e-20 seq3 98.7 1e-15 seq11 93.3 5e-14 >seq1 Length=2377843 Score = 232 bits (256), Expect = 8e-56 Identities = 1164/1817 (64%), Gaps = 63/1817 (3%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| || ||||| | || | ||||| | || | ||||||| | | || Sbjct 1847385 TAGTACATACCAGTCTTCAAACCCTTCTTCCAACCATAGAAATGCATACTTGTCAATTTA 1847444 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715 ||| |||||| || ||| || ||||| | |||| || |||||||| | | Sbjct 1847445 CCCATAGTTGGATCTTTAATGTGAATATTCAAAGATTGAGATTGATCAATGAAAGCAGCT 1847504 Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGCGGTAGA 105773 | | || ||||||||||||| || || | ||| ||||||| || || ||| | Sbjct 1847505 CTATCAGCAGCCATATCAATGATATGTTT--TTGTGAAATTTCCCAAACAGTCTTGTACA 1847562 Query 105774 GATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTG---A 105830 | |||||| ||||||||||| | || | | ||| || ||||| ||| | Sbjct 1847563 AAGCCTTGATTTCATCTGGGATGTTTGGCAAACCTTGGATCGAACCATTG---TTGGAAA 1847619 Query 105831 CCATGAGATCCTTCATATCCTTGGACCAAAGACC--AATCTTCTTGAGATCATTGACGAG 105888 ||| | ||||||| | | ||||| ||| |||| | | ||| || | | Sbjct 1847620 TAATGTTACTCTTCATAGCATCATTCCAAATACCCAAATCAACC--AAATCCTTCA--AC 1847675 Query 105889 ATGCTTG--TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCGT 105945 | | || |||||||| || || || || | |||||| ||| || ||||| | Sbjct 1847676 AAGTATGGATTGACAATTTGGAATTCACCAGCCAAAACTCTTCT-AGAGTAAATGTTGGA 1847734 Query 105946 CGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 106005 ||||| ||||| || |||||||| |||||||||||||||| || || || |||||||| Sbjct 1847735 AGTGTAAGGTTCGAAACATTCATTGTTACCCAAGATTTGTGAAGTAGAAGCAGTTGGCAT 1847794 Query 106006 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATC 106065 ||| || | ||| | ||| | | ||| | || || || || | | ||| Sbjct 1847795 TGGAGCAACCAACAAGGAGTTTCTCAAACCATGTTTGGCCATCTTTTGTTTCAAAGTATC 1847854 Query 106066 CCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGG 106123 ||| || || || || ||||||| |||| ||| |||||||| | | ||||| Sbjct 1847855 CCAATCCCATAATTCAG-TTGGTTTTCTGTTCC-ACAAGTCAAATTGTAATAAACCTTGA 1847912 Query 106124 GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTC 106183 || | |||||||| | | |||||| ||||| | |||| |||||| Sbjct 1847913 GAAGCTGGAGAACCTGGGTAACTTTCATAGACACCTTCTTCAGCAGCTAATTCAATAGAA 1847972 Query 106184 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 106243 | || | | || || || |||||||||||||| || || | || | ||||| Sbjct 1847973 GATTCAACAGCAGCATGGTAAATGGTTTCAAAGATTTGAATGTTTAATTCTCTAGCTTCT 1848032 Query 106244 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 | |||||||||| | | | | ||||| |||| || | |||||||||||||||| Sbjct 1848033 TGAGAATCAAATGGCAATCTCAAAGACATAAAAGCATCAGCTAAACCTTGAACACCCAAA 1848092 Query 106304 CCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTC 106361 |||| |||||||||| ||||||||| ||||| || ||| ||| || || | || | Sbjct 1848093 GCAATTGGTCTGTGTCTCATATTAGATCTTTC-AGC-TTCTGGAACTGGGTAGTAGTTAC 1848150 Query 106362 TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA- 106420 || || |||| ||| | || || |||| || || | |||||| | ||||||| Sbjct 1848151 GATCGATAACTCTGTTCAAGTTACGAGTGACAACTTTAGTAACTTCATGCAATTTTTCAA 1848210 Query 106421 --TAATCAAAAGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATG 106472 | || |||| | | ||||| | ||| | ||| | || || || | Sbjct 1848211 AGTTATACCAAGT---ATTGCTTTCATCGTGTTCAACAAAAGATGGCAATGCAATGGAAG 1848267 Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532 |||| || |||||||| ||||| | | | || || | |||||| |||||||| Sbjct 1848268 CCAAGTTACAAACAGCAACTTCATCTGGAGCAGAATATTCAACAATTTCACAACACAAGT 1848327 Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 ||||| || || |||||||||||||||||| |||| |||| || ||||| || | Sbjct 1848328 TGGAAGATTTGATGACACCCAAATTCTTTTGGTTAGTCTTGGTGTTACAAGCATCTTTAT 1848387 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG-ACTTGAGAATTGCCTTCCACACATCG 106651 | | ||| | || || || || || || || | ||| || || || | ||| | | Sbjct 1848388 ACAACATAAATGGAGTACCAGTTTCGGTTTGGGCACTCAAG-ATAGCGTACCATAATTTT 1848446 Query 106652 GCGGC--TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709 ||| || | || | | | || |||| ||||| | || || | ||| Sbjct 1848447 TGGGCTTTGATGGTTTGTC--TACCACGGTTCTCCTTTTCGTATCTGGTATATAATTCTT 1848504 Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 106769 |||| || ||||| | || || | |||||| || | | |||| |||| | || || Sbjct 1848505 CAAATTCATCACCGTAGACATCTGACAAACCTGGAGCTTCATTTGGAGAGAACAAAGTCC 1848564 Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829 | | ||| | ||||| | ||||||||| | ||||| ||||||| | || || | Sbjct 1848565 AGTCACCGTTTTGTTCAACTCTCTTCATGAACAAATCTGGGATCCACAAAGCTGGGAACA 1848624 Query 106830 GATCTCT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 106888 ||||| | | || ||||| | ||| ||||| || | || | || || | | Sbjct 1848625 AGTCTCTGGCTCTGA-TTTCTTCTTTACCGTGGTTCTTTCTAATATCGATAAAGTCAAAG 1848683 Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGC 106944 ||||| ||||||||| || | || | || | || || || | | ||| | Sbjct 1848684 ATATCACTGTGCCATGGTTCCAAGTATAAAGCAAAAGCACCTGGTCTCTTG-TTACCACC 1848742 Query 106945 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 107004 ||||| ||||| || || ||| ||| || || | | ||| ||||||||||| | || Sbjct 1848743 TTGATCAACATAACGAGCAGTGTTGTTGAAAACTCTGACCATAGGAATAATACCGTTGGA 1848802 Query 107005 TTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 107064 |||||| || || ||| || | ||| | | | |||||||||| || Sbjct 1848803 AGTACCATTAGTACCAGCAATGTAAGCACCAGTGGAACGAATGTTGTGGATGTGCAAACC 1848862 Query 107065 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 107124 |||||| ||||| | ||| || ||| ||||| | | ||| | || ||||| | Sbjct 1848863 AATACCACCAGCACTCTTGGAAATTAAAGCACATGATTTCAAAGTATCGTAAATACCTTC 1848922 Query 107125 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC-TG--GACATCTGCGGTCTTGGTGT 107181 || || || ||||| | || ||| ||| ||| || ||||| || |||||||| || Sbjct 1848923 AATGGAATCATCCTTCATAGC---AAGCAAGAAACATGAAGACATTTGTGGTCTTGGGGT 1848979 Query 107182 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA-CCTTGGGACATCTTGTCGT 107240 ||| |||||||| | ||| | |||| |||| ||| | ||| |||||| | | Sbjct 1848980 ACCGGCATTGAACAAACATGGGGAACCGTGTGTGAA-ATATCTTTGTGACATCAAATTAT 1849038 Query 107241 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACA 107300 | || || | || ||| |||| ||||| || || || || || | ||||| | Sbjct 1849039 AAGTTTCAATAACTCTTGGAATATCTTTACCGTGAATACCAATAGCAACTCTCATAATTA 1849098 Query 107301 TGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGG 107359 | ||| ||| |||| | | || | || ||| | ||| | |||| || | | Sbjct 1849099 AATGTTGTGGTCTTTCAGCAACTTTACCGTTGATACGTAACAAATATGATCTT-TCCATG 1849157 Query 107360 GTTTTGAGACCAAAGTA 107376 ||||||| ||||||||| Sbjct 1849158 GTTTTGAAACCAAAGTA 1849174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 197/289 (68%), Gaps = 15/289 (5%) Strand=Plus/Plus Query 9277 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9336 ||||||| |||||||| || || | ||| || | || ||| ||||||||||| | Sbjct 2272711 TATCAAACCCATCCATTTCAACTAACAATTGATTCAAGGTGGTTTCACGTTCATCATTAG 2272770 Query 9337 C-----TGGCA-TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGA 9390 | | ||| | || || | ||||| || || | |||||||| ||||||| || Sbjct 2272771 CACCAGTTGCATTTCCTTTAGAA---CGTTGTTTACCAATAGCATCAATTTCATCAACGA 2272827 Query 9391 AGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGC 9450 | ||||| | || |||||| | || | | ||| | ||| ||||| ||| ||| | Sbjct 2272828 AAACAATCGAAGGAGCATTTTCTCTAGCAGTCTTAAACAAATCACGAACTCTTGAGGCAC 2272887 Query 9451 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGAT-GAAGGGGACATT 9508 | |||||||| ||||| || ||||| | | |||| ||| | || ||| || ||| Sbjct 2272888 CTACACCAACGAACATTTCAACAAATTCAGAACCGGAGACA--GAATAGAATGGAACACC 2272945 Query 9509 AGATTCACCCGCA-ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || |||||| ||| || || | | | ||| || ||||| |||||||| Sbjct 2272946 AGCTTCACCAGCAGTTGCCTTAGCCAACAAG-GTTTTACCAGTACCTGG 2272993 >seq21 Length=244291 Score = 114 bits (126), Expect = 2e-20 Identities = 328/495 (66%), Gaps = 26/495 (5%) Strand=Plus/Plus Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 || || |||||||| ||||||||| || || ||||||| |||||| ||||| |||||| Sbjct 7462 GTATAAGGTTCAAAACATTCATTAAATCCTAAAATTTGTGAGGTGGAAGCTGTAGGCATT 7521 Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG-ATGCGTTCCTTGAGAACATC 106065 ||||| | |||||| || | | |||| | ||| |||| ||| ||||| || Sbjct 7522 GGTGCAACCAAAAGGGAATTTCTTA-ACCCAAATTTTTGAATGCTTTCTTTGAGTTTATT 7580 Query 106066 CCAGTCGTA---GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122 ||||||||| || | || | | | ||||||||||||||| || | |||| Sbjct 7581 CCAGTCGTACATCTTAGACGGAGTATGA---TTCCACATATCAAATTGTAGAATACCTTC 7637 Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTT---CAGCCAATTCACA 106179 || | || || || | ||| || ||||| | || | ||| || |||||| Sbjct 7638 AGATGCAGGTGATCCTTGAAAAGTTTCATATGGTCC---GTCTTGAATAGATAATTCAAC 7694 Query 106180 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 106239 || || || | || || || || |||||||| || || ||| | | | | || Sbjct 7695 TGAAGCTTCAAGAGCCGCATGGTAGATTGTTTCAAATATCTGAATATTTAATTTCCTAGC 7754 Query 106240 TTCATCTGAATCAAATGCGTAGCGGCACAAAAT-----AAATACATCCGCGAGACCTTGA 106294 | ||||| ||||||| ||||| | || | ||||| ||| || | |||||| Sbjct 7755 AGCTTCTGATTCAAATG-GTAGC----CTAAGTTCGGCAAATAAATCTGCTAACCCTTGA 7809 Query 106295 ACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT-TTCGCGCAGTCTCAACGGGATA 106353 |||||||| |||| || | || || |||| || | |||| || |||||||| ||||| Sbjct 7810 ACACCCAAGGCAATTGGACGGTTACGTTTATTTGAGTATTCG-GCTGTCTCAACAGGATA 7868 Query 106354 AAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAG 106413 || || || || ||| ||| | ||||| | | | ||| |||| ||| || Sbjct 7869 TAATGTTACATCGATCACTTTGTTCAAGTTTTTAGCCAACACCTTGGTGACAGAATGTAG 7928 Query 106414 TTTTTCATAATCAAA 106428 ||| || ||||||| Sbjct 7929 TTTCTCGAAATCAAA 7943 >seq3 Length=1232947 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 |||||| | ||||| ||||| || || | ||||| || ||||||||| |||||| Sbjct 1215398 TATGGTAGAGTTGCTCCACGTTCTGGATTAGCTGTTAAACATGGTATTTCTACTGGTGCT 1215457 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 |||||||||||| | || ||| |||||||| ||||| ||| | || ||||| | || Sbjct 1215458 GGTGTTATTGATGCTGATTATCGTGGTGAAGTTAAAGTTGTTTTATTTAATCATAGTGAA 1215517 Query 155164 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAA 155202 ||||| ||||| | || |||| ||| | || || ||| Sbjct 1215518 AAAGATTTTGAAATTAAACAAGGTGATAGAATTGCTCAA 1215556 >seq11 Length=485753 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/283 (68%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 9277 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9336 |||||||||||||||| || || | ||| || | ||| | ||| ||||||||||| Sbjct 332799 TATCAAAACCATCCATTTCAACTAATAATTGATTCAAAGTATTTTCACGTTCATCATTTC 332858 Query 9337 CTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAA 9396 | || |||| || | || || || | ||||||||| ||||||| || | || Sbjct 332859 CACCAATTTTACCATTACCTCTTTCTTTACCAATGGCATCAATTTCATCAACAAAAATAA 332918 Query 9397 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 | |||| |||| | ||| ||| ||| | ||| ||||| ||| || || |||| Sbjct 332919 TTGATGGGGCCATTTCTCTAGCGGTTTTAAATAAATCACGAACTCTTGAAGCACCAACAC 332978 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGC-GGAACATTGGAT--GAAGGGGACATTAGATT 9513 |||||||||| || ||||| | | | | |||| ||| || || ||| || || Sbjct 332979 CAACAAACATTTCTACAAATTCAGAACCAGAAACA---GATAAAAATGGAACACCAGCTT 333035 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| ||| | ||| || | | ||| ||||| |||||||| Sbjct 333036 CACCAGCAGTTGCTTTAGCTAATAAAGTTTTACCAGTACCTGG 333078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979693786000