Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-27 >seq2 Length=1666313 Score = 136 bits (150), Expect = 5e-27 Identities = 273/394 (69%), Gaps = 18/394 (5%) Strand=Plus/Minus Query 154702 ATGATAAAAGAAATGTATGTTTGATACCAG--AGTCAGCACATGGAACTAATCCTGCTAG 154759 |||| |||||||| | |||||||| |||| ||| || ||||| |||||||| ||| Sbjct 1326375 ATGAACAAAGAAATATTTGTTTGATTCCAGTTAGT--GCTCATGGTACTAATCCAGCTTC 1326318 Query 154760 TGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGA 154819 ||||| ||| | || |||||||||| || || ||| | ||||| || || Sbjct 1326317 TGCTGCTATGTCTGGTTTGAAAGTTGTTCCAGTTAAATGTTTGTCTAATGGTTCTATTGA 1326258 Query 154820 CATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATT-TG--AACT-GTCATGTATTA 154875 | ||||| || | ||||| | | || |||| || |||| || | ||||| Sbjct 1326257 TTTAGAAGATTTACAAGCTAAAGC--TGA--AAAACATGCTGCTAACTTGTGTTCTATTA 1326202 Query 154876 TGATTACATACCCATCTACACATGGTGTATTTGAAAC---TAACATTAGACAGATATGTA 154932 ||||||| || |||||||| ||||| |||||||| | | || ||| || ||| | Sbjct 1326201 TGATTACTTATCCATCTACTTATGGTTTATTTGAACCAGGTGTCA--AGAGAGCTAT-TG 1326145 Query 154933 AGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGG 154992 | || |||||||| |||||||| || ||||||||||| || ||| | ||||| || | Sbjct 1326144 ATATTGTTCATGAACATGGTGGTTTAGTTTATCTTGATGGTGCCAATATGAATGCTCAAG 1326085 Query 154993 TAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAA 155052 | || || | ||| |||| | ||||| ||||| |||||| | || | ||||||| Sbjct 1326084 TTGGTTTAACTTCTCCAGGTGATTTAGGTGCTGATGTTTGTCATTTGAATATTCATAAAA 1326025 Query 155053 CATTCTGTATTCCACATGGAGGTGGAGGTCCTGG 155086 | || | | ||||||||||| ||||| || Sbjct 1326024 CTTTTGCTTTGAGTCATGGAGGTGGTGGTCCAGG 1325991 Score = 134 bits (148), Expect = 2e-26 Identities = 194/274 (71%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 ||||||||| | |||| | ||||| |||||| |||| | || ||||| ||||| || Sbjct 1327349 TGATATTGCATTGGGTACTTCTCAAAGATTTGGTGTTCCATTTGGTTATGGTGGTCCACA 1327290 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG 153865 ||||||||| || ||||| || || ||| ||||| || || || |||||||| || Sbjct 1327289 TGCTGCATTTTTCGCAACTTCATCTAAATATGCAAGAAAAATCCCAGGAAGAATTGTTGG 1327230 Query 153866 TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCA 153925 | || |||||| ||| || ||| | | ||||| |||| |||||||| || Sbjct 1327229 TATTTCTAAAGATAGATTAGGCAAACCAGCTTTACGTTTAGCTTTACAAACTAGAGAACA 1327170 Query 153926 GCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAA 153985 ||||| | ||||| ||||| || ||| ||||| || || || ||| || ||||||| Sbjct 1327169 ACATATTAAAAGAGAAAAAGCTACTTCTAATATCTGTACTGCACAAGCATTGTTGGCTAA 1327110 Query 153986 TATGTCTGGATTCTATGCAGCATATCATGGTGCA 154019 || |||| ||||| | ||||||||| || Sbjct 1327109 CATTTCTGCTAATTATGCTGTCTATCATGGTCCA 1327076 Score = 93.3 bits (102), Expect = 5e-14 Identities = 180/262 (69%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 153168 AAAAATATAGCAAAAGCAAACAAAGTAAAACCTAGTCTT-ATAGGTCAAGGATACTATGG 153226 |||||| |||| || ||| ||| ||||| | ||| || ||| |||| || || Sbjct 1327941 AAAAAT-TAGCTAATAAAAATAAAATAAAAAA-ATCCTTCATTGGTAAAGGTTATGCCGG 1327884 Query 153227 AACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATC 153286 |||||| ||| || || || || |||| ||||||| ||| ||||| || || Sbjct 1327883 TACCATTTTACCACCTGTTATTCAAAGAAATCTTCTTGAATCTCCAGAATGGTATACTTC 1327824 Query 153287 TTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCA 153346 |||||| || |||||| | || || ||||| || ||||| | | || || || ||||| Sbjct 1327823 TTACACACCATATCAACCAGAAATTTCTCAAGGTAGATTAAATTCCTTGTTGAACTACCA 1327764 Query 153347 AACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGC 153406 ||| | || || |||||||| || || || || || ||| |||||||||||| Sbjct 1327763 AACTTTAATTACTTCCCTTACAGGTTTGGACATGGCTAATGCTTCTTTATTAGATGAAGG 1327704 Query 153407 AACTGCAGCAGCAGAAGCAATG 153428 || || || | ||||| ||| Sbjct 1327703 TACCGCTGCTGGGGAAGCCATG 1327682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579211713976000