Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1 269 3e-67 >seq1 Length=2377843 Score = 269 bits (298), Expect = 3e-67 Identities = 606/901 (67%), Gaps = 27/901 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || |||||| || || ||||| |||||||||| || || || || | Sbjct 1803912 CATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGC 1803971 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATA-----TAGTACTA 36986 | || ||||||||||| ||||| ||||| |||| ||| || | | || Sbjct 1803972 CAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCTTGTTACC 1804031 Query 36987 CATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCA 37046 || | || | | | ||||| |||||| |||| | |||| |||||| | ||| Sbjct 1804032 CAAGGCAAATAAT-----AATCTATCAGCAACATATTCAACATATTGACACATCAAGTCA 1804086 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTAT 37105 |||| ||||| | || ||||||| ||||| |||| | || |||||| | || Sbjct 1804087 CAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAA-ATATTCTTTTTCAAC-AT 1804144 Query 37106 TACAGCATCTTTAACTATA---TTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATA 37162 || || ||| ||| ||| || ||| || |||| || ||| | || || | Sbjct 1804145 --CAACAGCTTCAACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTG 1804202 Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1804203 GGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATT 1804262 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 || || || || |||||||| |||||||| ||||| | ||| || || | ||||| || Sbjct 1804263 GGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGA 1804322 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGT---GTACCGAAAGT 37339 ||| |||||||||||||||| || ||||| || || | | | | | |||| Sbjct 1804323 ACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAG- 1804381 Query 37340 TGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT 37399 | || | ||| ||||||||| | | ||| || || || ||| |||| ||| Sbjct 1804382 -CATCT-TTATCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAAT 1804439 Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459 ||||||| || || || | || | ||||| ||| | | |||||| ||||| Sbjct 1804440 GTTTTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAAT 1804499 Query 37460 TAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA 37519 || |||| |||||||||||| ||||| ||||| || || || |||||||| || | Sbjct 1804500 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 1804559 Query 37520 CCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTAT 37579 ||||||| | | ||| || ||| | |||| | | | ||||||||| ||| || Sbjct 1804560 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 1804619 Query 37580 CCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCATT 37636 |||||| ||| || || || || | ||| | ||||| ||||||| ||||| Sbjct 1804620 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATT 1804679 Query 37637 TGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | || || |||||||||| | |||||| |||||||||||| ||| ||||| || Sbjct 1804680 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 1804739 Query 37697 ACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTAC 37756 || || |||||| | |||| || |||| || || |||||||| || || Sbjct 1804740 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAAC 1804799 Query 37757 A 37757 | Sbjct 1804800 A 1804800 Score = 158 bits (174), Expect = 1e-33 Identities = 556/855 (65%), Gaps = 19/855 (2%) Strand=Plus/Minus Query 36907 TTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAG 36966 |||| || ||||| || || || | | |||||||||||||| |||||||||||||||| Sbjct 1025704 TTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTTCCATGAAATCAAATGGATTAG 1025645 Query 36967 ATGTATTATATATAGTACTACATGAT--AATTCCTTCAGAAGCCTATCCGCAACAAATTC 37024 ||||| ||| | | ||| | || | || | ||||| ||| | |||| Sbjct 1025644 TCACGTTATA-ATACTTAT-CATTACCAAAAGCAACCAACAATCTATCGGCACAATATTC 1025587 Query 37025 TATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-T 37083 | |||| |||||| | ||| | || ||||| | | ||||||| ||||| | Sbjct 1025586 CACATATTGACACATCAAATCACAATTCATACCCAACAAAGAAACTGGAAGCGCATCACT 1025527 Query 37084 GAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAG 37143 |||| | | |||| | || | ||||| || | | || || | |||| | | Sbjct 1025526 GAAGTACTTCTTTT-CAATACTAACAGCTTCAGTGATAATCTTTTCTATAA--TGGAAGG 1025470 Query 37144 TTGGGGGATATTTT--AAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTC 37201 | || |||| | || ||| ||| | |||||| ||| |||| || | |||||| Sbjct 1025469 ATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAAGCATAATCGGTGTGAATACCTTC 1025410 Query 37202 ATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAAT 37261 || |||| ||||||||||| || || ||||| |||||||| || ||||||||||| | Sbjct 1025409 GTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAA 1025350 Query 37262 CCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTAC 37321 ||| || || | || || || ||| |||||||| ||||||| || |||||||| || Sbjct 1025349 CCAGAAAATGGAAGCGAATGACCCACTGAAGAAAATGCCTTCAATAGCAGCAAATGCCAC 1025290 Query 37322 AAGAC---GTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGC 37378 | | || | || | | || | || ||||||| | | | ||||||||| Sbjct 1025289 CAATCTTTCTGCAAACAAGGCT--TCT-TCGTCTTGAATCCATCTAATAGCCCAATCTGC 1025233 Query 37379 CTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACT 37438 ||| || ||| ||| | ||||| || || || | || | || | | Sbjct 1025232 TTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAACAAGAAATCGGCCTCCTTAGG 1025173 Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 ||| | | || || ||||||| | ||| |||| || || |||||||| || Sbjct 1025172 ATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTTCTGAATGGATATTTTCCATCAT 1025113 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 ||||| || |||| | | ||||||| | || ||| || || |||| | | Sbjct 1025112 GATCTGGAATTTGTAAACCAGCTTGGCTTCAGGAAGTTTAACTTCAGTACAAAAGTTTTC 1025053 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | | ||||||||||| ||||| ||||| || ||||| || || | ||| | || Sbjct 1025052 AACCAAGTTTTCATTGACTATACCATCTGATGCAGCAAAAAAGGCTAAAACTCTTGAGAT 1024993 Query 37619 AAAATGTCTTTCATCAT--TTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATC 37675 ||| ||||||||| | || || | |||| |||||||| || |||||| || || Sbjct 1024992 GAAAAATCTTTCATCTTTATTCATTTTATTTTCCCAATCATCAAAATCTTTACTCAAGTC 1024933 Query 37676 AACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATT 37735 || ||| || | |||||||| ||| | | || || | |||||||| ||| Sbjct 1024932 AATTTCTTCTGCTGTCCAAAATGATGCAACAGATTTCTTGTAGAAAGTCCAAATTTCAGG 1024873 Query 37736 ATGTTGTATTGGAAA 37750 || || ||||||||| Sbjct 1024872 ATATTTTATTGGAAA 1024858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592315689406000