Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq1 201 6e-47
seq21 163 1e-35
>seq1
Length=2377843
Score = 201 bits (222), Expect = 6e-47
Identities = 303/426 (71%), Gaps = 6/426 (1%)
Strand=Plus/Plus
Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947
||||||| |||| ||| ||| ||| | ||||| |||||| ||| ||| || ||||||||
Sbjct 1848545 ATTTGGAGAGAACAAAGTCCAGTCACCGTTTTGTTCAACTCTCTTCATGAACAAATCTGG 1848604
Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007
||||||| || || || ||||| ||||| ||||||||||| ||||| |||||| |
Sbjct 1848605 GATCCACAAAGCTGGGAACAAGTCTCTGGCTCTGATTTCTTCTTTACCGTGGTTCTTTCT 1848664
Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067
| ||| | || ||||| ||||| |||||||||||| || || | ||||||| |||
Sbjct 1848665 AATATCGATAAAGTCAAAGATATCACTGTGCCATGGTTCCAAGTATAAAGCAAAAGCACC 1848724
Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127
| ||| || ||||||||||| || || | ||||| | ||||||||| | | |||
Sbjct 1848725 TGGTCTCTTGTTACCACCTTGATCAACATAACGAGCAGTGTTGTTGAAAACTCTGACCAT 1848784
Query 26128 TGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186
|||| |||| | |||| || | || || || | | ||| | | || || || | ||
Sbjct 1848785 AGGAA-TAATACCGTTGGAAGTACCATTAGTACCAGCAATGTAAGCACCAGTGGAACGAA 1848843
Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA--ATCTGA 26244
| | ||| || | ||| || |||||||| | || ||||| ||||| || | |
Sbjct 1848844 TGTTGTGGATGTGCAAACCAATACCACCAGCACTCTTGGAAATTAAAGCACATGATTTCA 1848903
Query 26245 AACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGA 26304
|| |||||| |||| |||| ||| |||| | ||||| | | || ||||| |||||
Sbjct 1848904 AA--GTATCGTAAATACCTTCAATGGAATCATCCTTCATAGCAAGCAAGAAACATGAAGA 1848961
Query 26305 TAATTG 26310
| |||
Sbjct 1848962 CATTTG 1848967
Score = 132 bits (146), Expect = 2e-26
Identities = 346/519 (67%), Gaps = 8/519 (2%)
Strand=Plus/Plus
Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724
|||||||| |||| | || | || |||||| | || ||||| ||||| |||||
Sbjct 1847346 GTAAATTGAATAGCGGCAGAAGCAGCTTGAGTTCTCAAGTAGTACATACCAGTCTTCAAA 1847405
Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCAATGTTTGCTGAT-TCTAA 24783
|||||||||||| || |||||||| ||| | ||| | || ||| ||| | |||
Sbjct 1847406 CCCTTCTTCCAACCATAGAAATGCATACTTGTCAATTTACCCATAGTTG--GATCTTTAA 1847463
Query 24784 AAACAAG-TTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAA 24842
|| |||| ||||||| ||| || ||| |||||| ||||| | ||||
Sbjct 1847464 TGTGAATATTCAAAGATTGAGATTGATCAATGAAAGCAGCTCTATCAGCAGCCATATCAA 1847523
Query 24843 TGATC-GTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGA 24901
|||| ||||| | || || || || | || ||||| | || || ||| |||
Sbjct 1847524 TGATATGTTTTTGT-GAAATTTCCCAAACAGTCTTGTACAAAGCCTTGATTTCATCTGGG 1847582
Query 24902 ATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAATAGATTCAATCT-CATATTCGG 24960
|| ||| | | ||| | || ||||| | | |||| | | ||| ||||
Sbjct 1847583 ATGTTTGGCAAACCTTGGATCGAACCATTGT-TGGAAATAATGTTACTCTTCATAGCATC 1847641
Query 24961 TGTCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTC 25020
|||||| | | | | | ||| | | ||||| | ||| | || |||||
Sbjct 1847642 ATTCCAAATACCCAAATCAACCAAATCCTTCAACAAGTATGGATTGACAATTTGGAATTC 1847701
Query 25021 TCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATT 25080
|||| |||||||||||| | | ||| |||||| | ||||| ||||||||||| ||
Sbjct 1847702 ACCAGCCAAAACTCTTCTAGAGTAAATGTTGGAAGTGTAAGGTTCGAAACATTCATTGTT 1847761
Query 25081 TCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAA 25140
|| |||||||| |||||||| || ||||||||| || | || | || ||||||||
Sbjct 1847762 ACCCAAGATTTGTGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAGGAGTTTCTCAA 1847821
Query 25141 ACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179
||||| ||| | |||| |||||| || ||||||||||
Sbjct 1847822 ACCATGTTTGGCCATCTTTTGTTTCAAAGTATCCCAATC 1847860
>seq21
Length=244291
Score = 163 bits (180), Expect = 1e-35
Identities = 261/375 (70%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992
||| |||||||| |||||||| | | |||| ||||||||||| | ||| | |||||| |
Sbjct 8316 CATGAATAAATCAGGAATCCATAATCCATAGAATAAATCTCTAGTTCTTAATTCTTCACT 8375
Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052
||| ||||| ||| | | ||||| | ||||||||||| ||||| ||||| | |||
Sbjct 8376 TCCATGATTTTTTCTCATCTCTAAAATGTCAAAAATATCGCCATGCCAAGGTTCAATATA 8435
Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112
|| |||||| ||| | ||| || ||||| || || || |||| |||||| | ||
Sbjct 8436 AATCGCAAAAGCACCAGGACGTTTACCACCACCCTGGTCGACATATCGTGCAGTGTTGTT 8495
Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172
||||| |||||||||||||||||| ||| || || || || | | ||| | ||
Sbjct 8496 AAAAACACGTAACATTGGAACTAATCCATTTGCAATCCCATTGGTACCAGCAATATATGA 8555
Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232
|| | || | || || || |||| ||||| ||||| || | ||| |||||
Sbjct 8556 ACCATTGGAACGAACTTCATGTACATGGATACCAATTCCCCCTGATGCTTTGGAAATTAA 8615
Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292
||| | || || || | | ||||| | ||| |||| ||||||| ||| ||
Sbjct 8616 TGCTGATTCGTGAAGGGTTTTATAGATTCCATCTATTGAATCATCTTTCATAGCTATCAA 8675
Query 26293 AAAACAAGAAGATAA 26307
||||| ||||| ||
Sbjct 8676 GAAACAGGAAGACAA 8690
Score = 107 bits (118), Expect = 1e-18
Identities = 218/316 (69%), Gaps = 12/316 (4%)
Strand=Plus/Plus
Query 24870 CTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCAT 24929
||||||| || ||||| || || | ||||| || |||||||||| || ||||
Sbjct 7277 CTGTTTTATACAATTCTTTGATGTCTTTGGGAATGCTCTGTATATTTTGAATGGAGCCAT 7336
Query 24930 TTTCTCTCAATAGATTCAATCTCATATTCGGTG---TCCAAAGATT-AATTTTTTCAAGA 24985
|||| ||| |||| || || ||| | || |||||| | || | |||||
Sbjct 7337 TTTCCATCAT--GATTTTATTTCTCATT-GCTGAATTCCAAATACCCAAATCCATCAAG- 7392
Query 24986 TCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTC--TTATTG 25043
||| |||| || | ||||| | | || ||||| ||||| || || | ||||
Sbjct 7393 TCTTTAATTAAATACTTATTAACCACCTGGAACTCTCCTGACAACACCCTACGGTTAT-- 7450
Query 25044 ATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATG 25103
|||| ||||| || | |||||||||||||||||| |||||| ||||| || || || |
Sbjct 7451 ATAAATTTGATGTATAAGGTTCAAAACATTCATTAAATCCTAAAATTTGTGAGGTGGAAG 7510
Query 25104 CTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTT 25163
|||| |||||| ||| | || || |||||||| || ||| |||| ||| || ||
Sbjct 7511 CTGTAGGCATTGGTGCAACCAAAAGGGAATTTCTTAACCCAAATTTTTGAATGCTTTCTT 7570
Query 25164 TTAATTTATCCCAATC 25179
| | ||||| ||| ||
Sbjct 7571 TGAGTTTATTCCAGTC 7586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253039537411250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |