Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1 201 6e-47 seq21 163 1e-35 >seq1 Length=2377843 Score = 201 bits (222), Expect = 6e-47 Identities = 303/426 (71%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||||||| |||| ||| ||| ||| | ||||| |||||| ||| ||| || |||||||| Sbjct 1848545 ATTTGGAGAGAACAAAGTCCAGTCACCGTTTTGTTCAACTCTCTTCATGAACAAATCTGG 1848604 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 ||||||| || || || ||||| ||||| ||||||||||| ||||| |||||| | Sbjct 1848605 GATCCACAAAGCTGGGAACAAGTCTCTGGCTCTGATTTCTTCTTTACCGTGGTTCTTTCT 1848664 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | ||| | || ||||| ||||| |||||||||||| || || | ||||||| ||| Sbjct 1848665 AATATCGATAAAGTCAAAGATATCACTGTGCCATGGTTCCAAGTATAAAGCAAAAGCACC 1848724 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 | ||| || ||||||||||| || || | ||||| | ||||||||| | | ||| Sbjct 1848725 TGGTCTCTTGTTACCACCTTGATCAACATAACGAGCAGTGTTGTTGAAAACTCTGACCAT 1848784 Query 26128 TGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 |||| |||| | |||| || | || || || | | ||| | | || || || | || Sbjct 1848785 AGGAA-TAATACCGTTGGAAGTACCATTAGTACCAGCAATGTAAGCACCAGTGGAACGAA 1848843 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA--ATCTGA 26244 | | ||| || | ||| || |||||||| | || ||||| ||||| || | | Sbjct 1848844 TGTTGTGGATGTGCAAACCAATACCACCAGCACTCTTGGAAATTAAAGCACATGATTTCA 1848903 Query 26245 AACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGA 26304 || |||||| |||| |||| ||| |||| | ||||| | | || ||||| ||||| Sbjct 1848904 AA--GTATCGTAAATACCTTCAATGGAATCATCCTTCATAGCAAGCAAGAAACATGAAGA 1848961 Query 26305 TAATTG 26310 | ||| Sbjct 1848962 CATTTG 1848967 Score = 132 bits (146), Expect = 2e-26 Identities = 346/519 (67%), Gaps = 8/519 (2%) Strand=Plus/Plus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 |||||||| |||| | || | || |||||| | || ||||| ||||| ||||| Sbjct 1847346 GTAAATTGAATAGCGGCAGAAGCAGCTTGAGTTCTCAAGTAGTACATACCAGTCTTCAAA 1847405 Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCAATGTTTGCTGAT-TCTAA 24783 |||||||||||| || |||||||| ||| | ||| | || ||| ||| | ||| Sbjct 1847406 CCCTTCTTCCAACCATAGAAATGCATACTTGTCAATTTACCCATAGTTG--GATCTTTAA 1847463 Query 24784 AAACAAG-TTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAA 24842 || |||| ||||||| ||| || ||| |||||| ||||| | |||| Sbjct 1847464 TGTGAATATTCAAAGATTGAGATTGATCAATGAAAGCAGCTCTATCAGCAGCCATATCAA 1847523 Query 24843 TGATC-GTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGA 24901 |||| ||||| | || || || || | || ||||| | || || ||| ||| Sbjct 1847524 TGATATGTTTTTGT-GAAATTTCCCAAACAGTCTTGTACAAAGCCTTGATTTCATCTGGG 1847582 Query 24902 ATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAATAGATTCAATCT-CATATTCGG 24960 || ||| | | ||| | || ||||| | | |||| | | ||| |||| Sbjct 1847583 ATGTTTGGCAAACCTTGGATCGAACCATTGT-TGGAAATAATGTTACTCTTCATAGCATC 1847641 Query 24961 TGTCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTC 25020 |||||| | | | | | ||| | | ||||| | ||| | || ||||| Sbjct 1847642 ATTCCAAATACCCAAATCAACCAAATCCTTCAACAAGTATGGATTGACAATTTGGAATTC 1847701 Query 25021 TCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATT 25080 |||| |||||||||||| | | ||| |||||| | ||||| ||||||||||| || Sbjct 1847702 ACCAGCCAAAACTCTTCTAGAGTAAATGTTGGAAGTGTAAGGTTCGAAACATTCATTGTT 1847761 Query 25081 TCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAA 25140 || |||||||| |||||||| || ||||||||| || | || | || |||||||| Sbjct 1847762 ACCCAAGATTTGTGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAGGAGTTTCTCAA 1847821 Query 25141 ACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 ||||| ||| | |||| |||||| || |||||||||| Sbjct 1847822 ACCATGTTTGGCCATCTTTTGTTTCAAAGTATCCCAATC 1847860 >seq21 Length=244291 Score = 163 bits (180), Expect = 1e-35 Identities = 261/375 (70%), Gaps = 0/375 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| |||||||| |||||||| | | |||| ||||||||||| | ||| | |||||| | Sbjct 8316 CATGAATAAATCAGGAATCCATAATCCATAGAATAAATCTCTAGTTCTTAATTCTTCACT 8375 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| ||||| ||| | | ||||| | ||||||||||| ||||| ||||| | ||| Sbjct 8376 TCCATGATTTTTTCTCATCTCTAAAATGTCAAAAATATCGCCATGCCAAGGTTCAATATA 8435 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || |||||| ||| | ||| || ||||| || || || |||| |||||| | || Sbjct 8436 AATCGCAAAAGCACCAGGACGTTTACCACCACCCTGGTCGACATATCGTGCAGTGTTGTT 8495 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 ||||| |||||||||||||||||| ||| || || || || | | ||| | || Sbjct 8496 AAAAACACGTAACATTGGAACTAATCCATTTGCAATCCCATTGGTACCAGCAATATATGA 8555 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 || | || | || || || |||| ||||| ||||| || | ||| ||||| Sbjct 8556 ACCATTGGAACGAACTTCATGTACATGGATACCAATTCCCCCTGATGCTTTGGAAATTAA 8615 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 ||| | || || || | | ||||| | ||| |||| ||||||| ||| || Sbjct 8616 TGCTGATTCGTGAAGGGTTTTATAGATTCCATCTATTGAATCATCTTTCATAGCTATCAA 8675 Query 26293 AAAACAAGAAGATAA 26307 ||||| ||||| || Sbjct 8676 GAAACAGGAAGACAA 8690 Score = 107 bits (118), Expect = 1e-18 Identities = 218/316 (69%), Gaps = 12/316 (4%) Strand=Plus/Plus Query 24870 CTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCAT 24929 ||||||| || ||||| || || | ||||| || |||||||||| || |||| Sbjct 7277 CTGTTTTATACAATTCTTTGATGTCTTTGGGAATGCTCTGTATATTTTGAATGGAGCCAT 7336 Query 24930 TTTCTCTCAATAGATTCAATCTCATATTCGGTG---TCCAAAGATT-AATTTTTTCAAGA 24985 |||| ||| |||| || || ||| | || |||||| | || | ||||| Sbjct 7337 TTTCCATCAT--GATTTTATTTCTCATT-GCTGAATTCCAAATACCCAAATCCATCAAG- 7392 Query 24986 TCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTC--TTATTG 25043 ||| |||| || | ||||| | | || ||||| ||||| || || | |||| Sbjct 7393 TCTTTAATTAAATACTTATTAACCACCTGGAACTCTCCTGACAACACCCTACGGTTAT-- 7450 Query 25044 ATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATG 25103 |||| ||||| || | |||||||||||||||||| |||||| ||||| || || || | Sbjct 7451 ATAAATTTGATGTATAAGGTTCAAAACATTCATTAAATCCTAAAATTTGTGAGGTGGAAG 7510 Query 25104 CTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTT 25163 |||| |||||| ||| | || || |||||||| || ||| |||| ||| || || Sbjct 7511 CTGTAGGCATTGGTGCAACCAAAAGGGAATTTCTTAACCCAAATTTTTGAATGCTTTCTT 7570 Query 25164 TTAATTTATCCCAATC 25179 | | ||||| ||| || Sbjct 7571 TGAGTTTATTCCAGTC 7586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039537411250