Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=1666313 Score = 143 bits (158), Expect = 3e-29 Identities = 196/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 139268 TGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCA 139327 || ||||||||| | ||||| |||| || || || | || ||||||||| || || Sbjct 1327076 TGGACCATGATAGACAGCATAATTAGCAGAAATGTTAGCCAACAATGCTTGTGCAGTACA 1327135 Query 139328 GATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCT 139387 ||| ||| || ||||| |||||| ||||||| || ||||||||||||| ||||| | Sbjct 1327136 GATATTAGAAGTAGCTTTTTCTCTTTTAATATGTTGTTCTCTAGTTTGTAAAGCTAAACG 1327195 Query 139388 GTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCT 139447 | || || |||||| || || || ||| |||||||| || || || ||||| Sbjct 1327196 TAAAGCTGGTTTGCCTAATCTATCTTTAGAAATACCAACAATTCTTCCTGGGATTTTTCT 1327255 Query 139448 CTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAAT 139507 ||| || || ||||| || ||||||||||| ||||| || || || | |||| Sbjct 1327256 TGCATATTTAGATGAAGTTGCGAAAAATGCAGCATGTGGACCACCATAACCAAATGGAAC 1327315 Query 139508 ACCAAACCTTTGCATACTACCTACAGCAATATCA 139541 |||||| ||||| | |||| | ||||||||| Sbjct 1327316 ACCAAATCTTTGAGAAGTACCCAATGCAATATCA 1327349 Score = 140 bits (154), Expect = 4e-28 Identities = 518/792 (65%), Gaps = 31/792 (4%) Strand=Plus/Plus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 |||||| | | ||||| | |||| || || || || ||||| ||||||||||| Sbjct 1325952 AATGGTTTTAAATGTTCTTTAACACAAACTGGTGCTTGACCTGGACCACCACCTCCATGA 1326011 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 | | || || ||||| | ||| | |||||| ||||| ||||| | |||| ||| Sbjct 1326012 CTCAAAGCAAAAGTTTTATGAATATTCAAATGACAAACATCAGCACCTAAATCACCTGGA 1326071 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 | || ||| || || ||||| | ||| |||||||| ||||| || |||||||| Sbjct 1326072 GAAGTTAAACCAACTTGAGCATTCATATTGGCACCATCAAGATAAACTAAACCACCATGT 1326131 Query 138342 TCATGAACGATCTTACATATCTGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGG 138400 |||||||| || | | ||| || || ||| || |||||||| ||||| ||| ||||| Sbjct 1326132 TCATGAACAATATCA-ATAGCTCTCTTGACACCTGGTTCAAATAAACCATAAGTAGATGG 1326190 Query 138401 ATATGTAATCATAATACATGA-GAGTT--CA-AATGTATTCATGATTGCTTTCTTCTCTA 138456 ||| |||||||||||| | | |||| || |||| || | | ||||| | || Sbjct 1326191 ATAAGTAATCATAATAGAACACAAGTTAGCAGCATGTTTT--TCA--GCTTTAGCTTGTA 1326246 Query 138457 GATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTG 138516 ||||| | || || |||| | ||| || || |||||||||| || | Sbjct 1326247 AATCTTCTAAATCAATAGAACCATTAGACAAACATTTAACTGGAACAACTTTCAAACCAG 1326306 Query 138517 CCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACT--CTGGTATCAGACATACATT 138574 ||| | ||| ||| |||||||| ||||| || ||| |||| |||| ||| | ||| Sbjct 1326307 ACATAGCAGCAGAAGCTGGATTAGTACCATGAGC--ACTAACTGGAATCAAACAAATATT 1326364 Query 138575 TCTTTTATCA---TCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATA 138631 ||||| ||| || || || ||||||| || ||| | | | || | ||| Sbjct 1326365 TCTTTGTTCATATTCACCACGAGATTTATGATATTCTCTAATTAATGATAAACCAGTATA 1326424 Query 138632 CTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACA 138691 ||||| || | || | || || | | ||| ||||||||| || |||||| Sbjct 1326425 TTCACCTTGAGCACCAGAATTTGGCATAGAAGTAGTAGCATCAAAACCAGTAATATCATT 1326484 Query 138692 TAACCATTTCTGTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATC-ATAGGTG 138750 || ||| | || ||| | |||| | || |||| || || || ||| || || | Sbjct 1326485 CAAATCTTTTTCAAATTCACCAATTAATTCTTTATAA-CCTTGAGCTTGATCAATTGGAG 1326543 Query 138751 TATGTGGATGCA---CGTTGGCAAATTCTTCCCAT-GACACAGGCATCAGTTCTGCTGCT 138806 | |||||| | ||| ||| | | ||| || | || || ||| | | Sbjct 1326544 CAAATGGATGAATAGAATTG--AAA--CCTGGCATGGATAAAGTTTGCATTTCAACAGTA 1326599 Query 138807 GCATTTAGTTTCATTGTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATC- 138865 ||||| | |||||| || || ||| | ||||| ||||| || |||| || ||||| Sbjct 1326600 GCATTCAATTTCATAGTACAGGAACCTAATGGAATCATACTATCAGCTAAAGATAAATCC 1326659 Query 138866 -TTTAGAGCATAACTCATAGATATATCTCATCATGTCAGTTTCACTGTGATACTTATTGA 138924 ||| | ||| || | |||||||| |||| |||||||| |||| | |||| Sbjct 1326660 ATTTTTTG--TAAAGAATGTAAATATCTCAACATGGCAGTTTCAGAATGATGAGTGTTGA 1326717 Query 138925 ATACTTCCTGAG 138936 | ||||| |||| Sbjct 1326718 AAACTTCATGAG 1326729 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/262 (68%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || || | || || || |||||||||||| ||| || || || || || || Sbjct 1327682 CATGGCTTCCCCAGCAGCGGTACCTTCATCTAATAAAGAAGCATTAGCCATGTCCAAACC 1327741 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 |||||| || || | |||||||| || || || | | ||||| || ||||| || Sbjct 1327742 TGTAAGGGAAGTAATTAAAGTTTGGTAGTTCAACAAGGAATTTAATCTACCTTGAGAAAT 1327801 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 || | |||||| || |||||||| || ||||| ||| ||||||| |||| || Sbjct 1327802 TTCTGGTTGATATGGTGTGTAAGAAGTATACCATTCTGGAGATTCAAGAAGATTTCTTTG 1327861 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT-AAGACTAGGTTTTACTT 140097 || || || ||| |||||| || || |||| ||| || ||| | ||||| || Sbjct 1327862 AATAACAGGTGGTAAAATGGTACCGGCATAACCTTTACCAATGAAGGAT-TTTTTTATTT 1327920 Query 140098 TGTTTGCTTTTGCTATATTTTT 140119 | ||| || |||| |||||| Sbjct 1327921 TATTTTTATTAGCTA-ATTTTT 1327941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997314378000