Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 260 2e-64 seq21 138 1e-27 seq3 98.7 1e-15 >seq1 Length=2377843 Score = 260 bits (288), Expect = 2e-64 Identities = 1050/1631 (64%), Gaps = 57/1631 (3%) Strand=Plus/Minus Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTC--CA-GTTGCTTCCTTATCGCCAACAAG 75385 |||||||| ||||| |||||||| || ||||| || ||| ||| ||| || | ||| Sbjct 1848991 TTCAATGCCGGTACCCCAAGACCACAAATGTCTTCATGTTTCTTGCTT---GCTATGAAG 1848935 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || || || || | ||||| || | ||| | | ||||| ||| || ||| | Sbjct 1848934 GATGATTCCATTGAAGGTATTTACGATACTTTGAAATCATGTGCTTTAATTTCCAAGAGT 1848875 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 ||||| |||||||| |||||||||| | | | ||| | || ||| || Sbjct 1848874 GCTGGTGGTATTGGTTTGCACATCCACAACATTCGTTCCACTGGTGCTTACATTGCTGGT 1848815 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || |||||| || | ||||||||||| ||| | | || || ||| ||| || || Sbjct 1848814 ACTAATGGTACTTCCAACGGTATTATTCCTATGGTCAGAGTTTTCAACAACACTGCTCGT 1848755 Query 75566 TATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAACCA 75619 ||||| |||||| || | |||| | || | | || | |||||||||||| Sbjct 1848754 TATGTTGATCAAGGTGG---TAACAAGAGACCAGGTGCTTTTGCTTTATACTTGGAACCA 1848698 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 ||||| |||||| | || || | || | || ||||| ||| | ||||| | Sbjct 1848697 TGGCACAGTGATATCTTTGACTTTATCGATATTAGAAAGAACCACGGTAAAGAAGAAA-T 1848639 Query 75680 CGGTGT-AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 | | | ||||| | || || | ||||||| ||||| | ||||||||| | ||||| Sbjct 1848638 CAGAGCCAGAGACTTGTTCCCAGCTTTGTGGATCCCAGATTTGTTCATGAAGAGAGTTGA 1848579 Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798 | ||| | ||| || | |||| |||| | | || |||||| | || || | Sbjct 1848578 ACAAAACGGTGACTGGACTTTGTTCTCTCCAAATGAAGCTCCAGGTTTGTCAGATGTCTA 1848519 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAG------GGTAGAGCCAA 75852 ||||| || ||||||| | || || | || ||| ||||| |||||| ||| Sbjct 1848518 CGGTGATGAATTTGAAGAATTATATACCAGATACGAAAAGGAGAACCGTGGTAGA--CAA 1848461 Query 75853 TGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 || | |||| | | ||| | ||||| | | | || || || ||||| Sbjct 1848460 ----ACCATCAAAGCCCAAAAATTATGGTACGCTATCTTGAGTGCCCAAACCGAAACTGG 1848405 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 || |||| |||| | || || ||||||||||||| |||| |||||||||||||||||| Sbjct 1848404 TACTCCATTTATGTTGTATAAAGATGCTTGTAACACCAAGACTAACCAAAAGAATTTGGG 1848345 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 ||||| || || | || |||||| | || || | | | ||||| Sbjct 1848344 TGTCATCAAATCTTCCAACTTGTGTTGTGAAATTGTTGAATATTCTGCTCCAGATGAAGT 1848285 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT------CAATGAAGAGAC 76086 |||||||| || ||||| || || || | ||| | ||| | ||||| | Sbjct 1848284 TGCTGTTTGTAACTTGGCTTCCATTGCATTGCCATCTTTTGTTGAACACGATGAAAGCAA 1848225 Query 76087 TCGCACTTTTGATTA---TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | |||| || | ||||||| | |||||| | || || |||| || || | Sbjct 1848224 T---ACTTGGTATAACTTTGAAAAATTGCATGAAGTTACTAAAGTTGTCACTCGTAACTT 1848168 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAG-TCTAATATG 76201 ||| |||| || || | || | || || ||| ||| || ||||| ||||||||| Sbjct 1848167 GAACAGAGTTATCGATCGTAACTACTACCCAGTTCCAGAA-GCT-GAAAGATCTAATATG 1848110 Query 76202 CGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGC 76261 |||||||||| |||| |||||||||||||||| | || |||| ||||| | | | Sbjct 1848109 AGACACAGACCAATTGCTTTGGGTGTTCAAGGTTTAGCTGATGCTTTTATGTCTTTGAGA 1848050 Query 76262 TACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 | |||||||||| | ||||| | || | || || |||||||||||||| || Sbjct 1848049 TTGCCATTTGATTCTCAAGAAGCTAGAGAATTAAACATTCAAATCTTTGAAACCATTTAC 1847990 Query 76322 CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTT 76381 || || | | || | | |||||| |||| | ||||| |||||| | | Sbjct 1847989 CATGCTGCTGTTGAATCTTCTATTGAATTAGCTGCTGAAGAAGGTGTCTATGAAAGTTAC 1847930 Query 76382 GAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAG 76441 |||||||| || || ||||| | | || ||||| ||| |||| ||||||| Sbjct 1847929 CCAGGTTCTCCAGCTTCTCAAGGTTTATTACAATTTGACTTGT-GGAACAGAAAACCAA- 1847872 Query 76442 CTCAACTA--CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 76499 || || || || |||||| | | || || || | | ||| | | ||| Sbjct 1847871 CTGAATTATGGGATTGGGATACTTTGAAACAAAAGATGGCCAAACATGGTTTGAGAAACT 1847812 Query 76500 GTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 76559 | ||| | || ||||||||||| || || || |||||||||||||||| ||||||| Sbjct 1847811 CCTTGTTGGTTGCTCCAATGCCAACTGCTTCTACTTCACAAATCTTGGGTAACAATGAAT 1847752 Query 76560 GCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCA 76619 | || ||||| ||||| | ||||| ||| |||||| | || ||||| || | Sbjct 1847751 GTTTCGAACCTTACACTTCCAACATTTACTCTAGAAGAGTTTTGGCTGGTGAATTCCAAA 1847692 Query 76620 TTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATT--GGTCTCTGGTCCAAGGATAT 76677 ||||||| || | | || || | | |||| ||| | ||| | | ||| Sbjct 1847691 TTGTCAATCCATACTTGTTGAAGGA--TTTGGTTGATTTGGGTATTTGGAATGATGCTAT 1847634 Query 76678 GAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGA 76737 |||| | ||| | |||||| || ||| | | || | ||||||||||| Sbjct 1847633 GAAGAGTAACATTATTTCCAACAATGGTTCGATCCAAGGTTTGCCAAACATCCCAGATGA 1847574 Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATG 76795 |||||| | | ||| || || ||||||| ||| | ||| || ||||||| ||| Sbjct 1847573 AATCAAGGCTTTGTACAAGACTGTTTGGGAAATTTCACAA--AAACATATCATTGATATG 1847516 Query 76796 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGT 76855 || || ||| | | | |||||||||||| |||| | ||||| | ||| || | Sbjct 1847515 GCTGCTGATAGAGCTGCTTTCATTGATCAATCTCAATCTTTGAATATTCACATTAAAGAT 1847456 Query 76856 CCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACC 76915 ||||| ||| || | | ||||||| | || | ||||| |||| | || || Sbjct 1847455 CCAACTATGGGTAAATTGACAAGTATGCATTTCTATGGTTGGAAGAAGGGTTTGAAGACT 1847396 Query 76916 GGAATGTACTA 76926 || |||||||| Sbjct 1847395 GGTATGTACTA 1847385 >seq21 Length=244291 Score = 138 bits (152), Expect = 1e-27 Identities = 639/991 (64%), Gaps = 65/991 (7%) Strand=Plus/Minus Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 ||||||| || || || || |||||||||||||| || ||||| ||||| | || Sbjct 8152 AATCACAAACTGAAACCGGTGGCCCATATATGCTTTATAAAGATGCCTGTAATGAAAAAT 8093 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 || || || || | || ||||||||| |||||| | ||| |||||| | || | Sbjct 8092 CAAATCAGAAAAACCTTGGTACAATCAAGTCGTCAAATTTGTGCTGTGAAATTGTTGAAT 8033 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 | || || || || ||||| || ||| | | || | || | || | |||| Sbjct 8032 ATTCATCACCAGAAGAAACAGCTGTGTGTAATCTCGGGTCCCTTGCATTACCGACGTATT 7973 Query 76074 TCAA---------TGAAGAGACTCGCACT-TTTGATTATGAAAAACTTCATGAAATCACA 76123 | || ||| || | | | ||||||| || ||||| ||| |||| Sbjct 7972 TGAAAACATCCGATGATGA-AGTAATAGAGTTTGATTTCGAGAAACTACATTCTGTCACC 7914 Query 76124 AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACT 76183 ||| | | | ||||| | ||| ||| || || || || ||||| |||||||| Sbjct 7913 AAGGTGTTGGCTAAAAACTTGAACAAAGTGATCGATGTAACATTATATCCTGTTGAGACA 7854 Query 76184 GCGCGAA-AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 || |||| | || |||| || || | || |||| |||||||||||||| | || || Sbjct 7853 GC-CGAATACTCAAATAAACGTAACCGTCCAATTGCCTTGGGTGTTCAAGGGTTAGCAGA 7795 Query 76243 TGTATTT-----ATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAAT 76297 | ||||| | || | ||||| ||||||| ||||| | || | | | | ||| Sbjct 7794 TTTATTTGCCGAACTTAG----GCTAC-CATTTGAATCAGAAGCTGCTAGGAAATTAAAT 7740 Query 76298 GCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCG--AGTTGTGAATTGGCTG 76355 || || |||||||| || || || || | || || || ||||| |||| || Sbjct 7739 ATTCAGATATTTGAAACAATCTACCATGCGGCTCTTGAAGCTTCAGTTG--AATTATCTA 7682 Query 76356 ---AAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTC 76412 ||| | || | ||||| || ||| | || || || || || |||| | || | Sbjct 7681 TTCAAGAC---GGACCATATGAAACTTTTCAAGGATCACCTGCATCTGAAGGTATTCTAC 7625 Query 76413 AGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC---TACGACTGGGATGTTCTCAAGG 76469 | |||||||||||| | | | || | || ||||||||| || ||||| | Sbjct 7624 AATTTGATATGTGGAA---TCATACTCCGTCTAAGATGTACGACTGGAATAAACTCAAAG 7568 Query 76470 AACGCAT-CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCC 76528 || |||| ||| | |||| | | || |||||| | ||||||||||| ||||| Sbjct 7567 AAAGCATTCAAAAATTTGGGT-TAAGAAATTCCCTTTTGGTTGCACCAATGCCTACAGCT 7509 Query 76529 TCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 |||||| ||||||| || || ||||||||| |||||||| || ||| |||| | || Sbjct 7508 TCCACCTCACAAATTTTAGGATTTAATGAATGTTTTGAACCTTATACATCAAATTTATAT 7449 Query 76589 CTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTC 76648 | || | |||| ||||| | || || ||| | | | || ||| | Sbjct 7448 AACCGTAGGGTGTTGTCAGGAGAGTTCCAGGTGGTTAATAAGTATTTAATTAAAGACTTG 7389 Query 76649 AAGAAGATTGGTCTCTGG---TC--CAAGGATATGAAGGATCTCATGGTGAAAGCGGGTG 76703 | | | | ||| | ||| || ||| || | || | ||||| || || || Sbjct 7388 ATGGATTTGGGTATTTGGAATTCAGCAATGAGA--AATAAAATCATGATGGAA---AATG 7334 Query 76704 GTTCCATTCAAAATATCTCAGA-TATCCCAGATGATATC-AAGAATCTCTACCGCACAGT 76761 | |||||||||||||| |||| || || | || ||| |||||| | || ||||| Sbjct 7333 GCTCCATTCAAAATAT-ACAGAGCATTCCCAAAGACATCAAAGAAT-TGTATAAAACAGT 7276 Query 76762 GTGGGAAAT----CAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCA 76817 ||||||||| ||| |||| | ||||| ||||| || ||| | ||| || | Sbjct 7275 GTGGGAAATTTCCCAA----AAAGTAATAATTGATATGGCAGCTGATAGAGGTAAATTTA 7220 Query 76818 TTGATCAAAGTCAAAGTATGAATCTATTCAT 76848 |||||||| ||||||||||| ||||||| Sbjct 7219 TTGATCAACTGCAAAGTATGAA--TATTCAT 7191 >seq3 Length=1232947 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27873 TTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTGATTGAAGAGAAC 27932 ||| || || | ||| |||| || | ||||| ||||| || | ||||| || | ||| Sbjct 1215556 TTGAGCAATTCTATCACCTTGTTTAATTTCAAAATCTTTTTCACTATGATTAAATAAAAC 1215497 Query 27933 GACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCAACTTGAATACCATG 27992 ||||| |||||||| ||| || | |||||||||||| |||||| ||||||||| Sbjct 1215496 AACTTTAACTTCACCACGATAATCAGCATCAATAACACCAGCACCAGTAGAAATACCATG 1215437 Query 27993 CTTCACAGCGAGACCGGATCGTGGTGCAACACGACCATA 28031 || ||||| | || || ||||| ||||| | |||||| Sbjct 1215436 TTTAACAGCTAATCCAGAACGTGGAGCAACTCTACCATA 1215398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568481432000