Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 293 3e-74 seq5 154 2e-32 seq16 138 2e-27 >seq1 Length=2377843 Score = 293 bits (324), Expect = 3e-74 Identities = 604/887 (68%), Gaps = 28/887 (3%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| ||| || ||| | || ||||| || || || || || |||| || || Sbjct 1803921 AGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAAT 1803980 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT--AATTCG 17977 | ||| ||||| ||||| ||||| || ||| ||| ||||| || | Sbjct 1803981 ATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTT--CTTGTTACCCAAGGCA 1804038 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 ||||||||||||| || ||| |||| |||||||| ||||||| || || |||||||| Sbjct 1804039 AATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCC 1804098 Query 18038 AGTAGTCTGAAA--GGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | || |||| || ||||||||| | | | ||||||| || | ||||||| || Sbjct 1804099 AATAAA--GAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAA 1804156 Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATT-TATTAATT--ATGTGATTATAATATA 18152 || || ||| || | || ||| || | | || | ||| | | | Sbjct 1804157 CAATAATCTTTTCAACAAT---TTCTGGAGATGGTCTGTGTTGCAAGTGGG---AGAACA 1804210 Query 18153 ATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACG 18212 | ||||| ||||||||||| ||||||||||||||||| | || ||||| || || | Sbjct 1804211 ACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAG 1804270 Query 18213 TTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAA 18272 | || || ||||| | |||||| ||||| | ||| || || || || || || | | Sbjct 1804271 TCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGA 1804330 Query 18273 AGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCA---AAACTGTATTTA 18328 |||| ||||| |||| ||| || || || | |||||||||||| ||| | |||| Sbjct 1804331 AGAAAATACCTTCAATAGCA-GCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 1804389 Query 18329 TTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCT 18388 | || | |||||||| |||||||| ||| ||||| || || | || Sbjct 1804390 T--CTT-GAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCA 1804446 Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAA 18448 || ||||||||||| ||| ||||| | ||||| | |||||| || ||||| ||| Sbjct 1804447 ATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAA 1804506 Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508 ||||||||||||||||| ||| ||||||| || || |||| ||| || ||| |||| Sbjct 1804507 GAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCT 1804566 Query 18509 TCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 || || ||| | ||| | |||| |||| | ||| || ||| ||| ||||| ||| Sbjct 1804567 TCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCA 1804626 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GA 18625 | || |||||||| || ||||| || |||| | ||||||| || || | Sbjct 1804627 GAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATTTAATTTG 1804686 Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 |||||||| ||||| | |||||| || |||||||||||| | ||||| || || | | Sbjct 1804687 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCT 1804746 Query 18686 TCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 ||||| | ||| || | || | || || | || || || ||||| Sbjct 1804747 TCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 1804793 Score = 181 bits (200), Expect = 2e-40 Identities = 551/840 (66%), Gaps = 32/840 (4%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||| ||| ||| || ||| | || || |||||||| || || || |||| ||||| Sbjct 1025730 AGCTCTTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATAT 1025671 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 | ||| ||||||||||||||||| |||||||| || || | || | Sbjct 1025670 ATTTTCCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCATTACCAAAAGCAAC 1025611 Query 17980 TAATAATCTATCTGCTACAA-ATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 || |||||||| || |||| |||| |||||||| |||||||||| ||||||||||| | Sbjct 1025610 CAACAATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCA 1025552 Query 18039 GTAGTCTGAAA--GGTAGAGCATCAAT-AATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | |||| || || |||||| | || | |||||| || || ||||| || Sbjct 1025551 --ACAAAGAAACTGGAAGCGCATCACTGAAGTACTTCTTT-TCAATACTAACAGCTTCAG 1025495 Query 18096 TTATTATGTT---TATTACCCTAGATTTTGGCAATTTATT----AATTATGTGATTATAA 18148 | || || || ||| | || | ||| ||||| || |||| || Sbjct 1025494 TGATAATCTTTTCTATAATGGAAGGATCCGGC---TTATTCTCCAAGTATG-------AA 1025445 Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 ||| |||||| ||| |||| ||||| | |||||| || || | || ||||| || Sbjct 1025444 AATAGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAG 1025385 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || ||||| || ||||| | ||||||||||| | ||| || || || ||||| | | Sbjct 1025384 AAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCA 1025325 Query 18269 GAAAAGAATATACCCTCAA-CGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT 18327 ||||| || || |||| ||| || || || | |||||||| ||||| | || Sbjct 1025324 CTGAAGAAAATGCCTTCAATAGCA-GCAAATGCCACCAATCTTTCTGCAAACAAGGCTTC 1025266 Query 18328 ATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387 | | | |||||| | ||||| ||| ||| || | ||| | || Sbjct 1025265 TTCGTCTTGAATCCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTC 1025206 Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAA 18447 || || || ||||| ||| || || | ||| || | || || || ||||| | Sbjct 1025205 AATGGCGTTGAACAAGAAATCGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAG 1025146 Query 18448 AGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGC 18507 ||||| |||| ||||| || ||||||| ||||| || | |||| | | || Sbjct 1025145 GGAATATGTTTCTGAATGGATATTTTCCATCATGATCTGGAATTTGTAAACCAGCTTGGC 1025086 Query 18508 CTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567 || ||| || || || || |||| |||| ||||| || ||||| |||||||| || Sbjct 1025085 TTCAGGAAGTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATC 1025026 Query 18568 AGCAGATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCA---TTATCCTTGA 18623 | | || ||||| || ||||| | || | |||||| | ||||| |||| | | Sbjct 1025025 TGATGCAGCAAAAAAGGCTAAAAC-TCTTGAGATGAAAAATCTTTCATCTTTATTCATTT 1024967 Query 18624 GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 ||| | ||| ||||| | |||||| | |||| |||||| | ||||||||| |||| Sbjct 1024966 TATTTTCCCAATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATG 1024907 >seq5 Length=745199 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| || ||||| ||||||||||| |||||||||||| |||| Sbjct 622776 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAATCTTCT 622717 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| ||||| |||||||||||||| || || ||||| ||| Sbjct 622716 GACACCATTGATAACGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 622657 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || ||||| || | ||||| ||||| || || || || || Sbjct 622656 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACCTTGTCTGACTACAAC 622597 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | || || || || ||||| ||||| ||| Sbjct 622596 ATTCAAAAAGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 622549 >seq16 Length=329187 Score = 138 bits (152), Expect = 2e-27 Identities = 172/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || ||||| ||||||||||| || ||||||||| Sbjct 297270 AAGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCC 297329 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || ||| |||||| ||||| |||||||| || || ||||| Sbjct 297330 TCCGACACCATTGACAATGTCAAATCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 297389 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| ||||| || | |||||| |||||||| || || || Sbjct 297390 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 297449 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || | || || || || ||||| ||||| |||| Sbjct 297450 A--ACATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTG 297501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870627740000