Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 257 3e-63 seq16 159 7e-34 seq5 159 7e-34 >seq1 Length=2377843 Score = 257 bits (284), Expect = 3e-63 Identities = 538/804 (67%), Gaps = 14/804 (2%) Strand=Plus/Plus Query 49642 CATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATAC 49701 || ||||||||||||| || ||| ||||||||||||| |||| || ||||| ||||||| Sbjct 1804037 CAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATAC 1804096 Query 49702 CCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtt 49761 ||||||| || ||| | |||||| | | |||||||||| | || ||||||| Sbjct 1804097 CCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAA 1804156 Query 49762 taattatcataattatattattttttgataatttatatttaatatgattcgcatatatta 49821 ||| ||| | || | |||| | || | | | | | | | | | | | | Sbjct 1804157 CAATAATCTT--TTCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-TGGGAGAACAACA 1804213 Query 49822 aACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 49881 |||| |||||||||||||||||||| || || ||| | || |||||||| ||||| | Sbjct 1804214 AACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCA 1804273 Query 49882 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 49941 | |||||||| || ||||||||||| | ||| || || || ||||| || | |||| Sbjct 1804274 AACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGA 1804333 Query 49942 ATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---AT 49998 | ||||| || | | ||||| || | | |||| | || | ||| ||| || Sbjct 1804334 AAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATA---TAAAGCATCTTTAT 1804390 Query 49999 CTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 50058 || ||||| || || ||||| || ||||| || | ||| | || || ||||| || | Sbjct 1804391 CTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGG 1804450 Query 50059 CTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAAT 50118 | ||||| || || ||| | ||||||||||||| Sbjct 1804451 CATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAAT 1804510 Query 50119 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTG 50178 ||||||||||||| | |||||| ||||| || ||| ||| | | ||||||| Sbjct 1804511 ACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTG 1804570 Query 50179 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 50238 || ||||||| | | || ||||| || || ||| |||||||||||||| | Sbjct 1804571 GCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAG 1804630 Query 50239 CTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATT----T 50294 | ||||| || |||||||| || ||||| | ||||||| || ||||| || | Sbjct 1804631 CAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATTTAATTTGTTGT 1804690 Query 50295 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACG 50354 ||| | || ||| ||| || |||||| |||||||| ||||| || || ||| || Sbjct 1804691 TCCAATCATCCAA-ATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCG 1804749 Query 50355 GATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTA 50414 | ||||||||| | | | || ||| || || ||| ||||| | ||||| || Sbjct 1804750 GCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATAACGACGT 1804809 Query 50415 GTAtttttttCTAATATCGGTTCT 50438 | |||| || ||||| |||||| Sbjct 1804810 TTGTTTTCTTGTAATAATGGTTCT 1804833 Score = 176 bits (194), Expect = 9e-39 Identities = 514/785 (65%), Gaps = 22/785 (3%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAATA 49650 ||| |||||||||||||| | |||||||| || || || ||| | || || | Sbjct 1025664 CATGAAATCAAATGGATTAGTCACGTTATAATACTTATCAT-TACCAAAAGCAACCAACA 1025606 Query 49651 ATCTATCGGCTACAA-ATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709 |||||||||| |||| |||| |||||||| |||| || ||||||||||||||||| || Sbjct 1025605 ATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 1025547 Query 49710 TTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattat 49768 || ||| | |||||| | || | ||||||| | || ||||||| | || || Sbjct 1025546 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTT-CAATACTAACAGCTTCAGTGATAAT 1025488 Query 49769 cataattatattattttttgataatttatattt----aatatgattcgcatatattaaAC 49824 | | || ||| || ||| |||| | ||||| | ||| ||||| Sbjct 1025487 CTT--TTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGA-----AAATAGTAAAC 1025435 Query 49825 ATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 49884 | ||| |||| || || | ||| ||||||||| | || |||||||| |||||||| | Sbjct 1025434 AAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAAC 1025375 Query 49885 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 49944 ||||||| || ||||| ||||| | ||| || || || || || | | ||||| | Sbjct 1025374 CTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAA 1025315 Query 49945 TACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATA 50004 | || || | | |||||||| | | |||| || |||||| || || ||| | Sbjct 1025314 TGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGAA 1025255 Query 50005 TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 50064 |||| | ||||||||||||||||||| || | ||||| || || || || | Sbjct 1025254 TCCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGA 1025195 Query 50065 ATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 | || || || | ||||| | ||||| ||| Sbjct 1025194 ACAAGAAATCGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTT 1025135 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACT 50184 | ||||| | | |||||| || || ||| |||| | | ||||| | | | Sbjct 1025134 CTGAATGGATATTTTCCATCATGATCTGGAATTTGTAAACCAGCTTGGCTTCAGGAAGTT 1025075 Query 50185 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 50244 |||||| | | | || |||||| || || ||| || |||||||| ||||| || | Sbjct 1025074 TAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGCAA 1025015 Query 50245 AGAATGCTAAAACGTATTTA-AT--AAAATGTTT-TTCATTATCTTTTAAATTTTCCCAA 50300 | || |||||||| | || | || ||||| ||| || |||| || |||||||||| Sbjct 1025014 AAAAGGCTAAAAC-TCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCCAA 1024956 Query 50301 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 |||| ||| || || || | ||||||| ||||||||||||||| || ||||| Sbjct 1024955 TCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTTC 1024896 Query 50361 TTATA 50365 || || Sbjct 1024895 TTGTA 1024891 >seq16 Length=329187 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || || |||| || || ||| || || ||||| Sbjct 297500 ACCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCAGA 297441 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| ||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 297440 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGG 297381 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| |||||| ||| ||||| || | || || ||||| || Sbjct 297380 AATACCTTCTTTGTCTTGGATTTTAGATTTGACATTGTCAATGGTGTCGGAGGATTCGAC 297321 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| | ||||| |||||||||||||| || || | || || ||||| || Sbjct 297320 TTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTT 297270 >seq5 Length=745199 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| | | || || || || ||||||| ||||| || || || || Sbjct 622546 AAAACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTC 622605 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || |||| | || || |||||||||||||| || || ||||| |||||||| || Sbjct 622606 AGACAAGGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGG 622665 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||||||||| ||||| ||| || ||| || | || || ||||| Sbjct 622666 TGGAATACCTTCTTTATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTC 622725 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| |||||||||||||| ||||||| || || ||||| Sbjct 622726 GACTTCTAAGGTAATAGTTTTACCAGTTAAAGTTTTAACGAAAATTTGCAT 622776 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 ||||||||||| | | || || || || ||||||| | |||| || || || || || Sbjct 622775 ATACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGA-ATGTTGTAGTC 622833 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || |||| | || || ||||||||||||||||| || ||||| |||||||| || Sbjct 622834 AGACAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGG 622893 Query 192426 TGG 192428 ||| Sbjct 622894 TGG 622896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478107952500