Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq1 268 2e-66
seq5 174 3e-38
seq16 152 9e-32
>seq1
Length=2377843
Score = 268 bits (296), Expect = 2e-66
Identities = 607/918 (66%), Gaps = 16/918 (2%)
Strand=Plus/Plus
Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890
||||||||| ||||||||| | |||||||||||||| ||||| || | || || ||
Sbjct 1803924 TTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAATATT 1803983
Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949
| ||| ||||| ||||| || | ||| ||| ||| | | || | || || |||
Sbjct 1803984 TTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCT-TGTTACCCAAGGCAAATA 1804042
Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009
|||||||||| || ||| ||||||||||||| |||| || ||||| |||||||||||||
Sbjct 1804043 ATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCCAATA 1804102
Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069
| || ||| | |||||| | | |||||||||| | || ||||||| ||| |
Sbjct 1804103 AAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAACAATAA 1804162
Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129
|| | || | |||| | || | | | | | | | | | | | ||||| |
Sbjct 1804163 TCTT--TTCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-TGGGAGAACAACAAACAAG 1804219
Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189
||||||| |||||||||||||| || ||| | || |||||||| ||||| || ||||
Sbjct 1804220 CAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCAAACCTG 1804279
Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249
|||| || ||||||||||| | ||| || || || ||||| || | ||||| ||||
Sbjct 1804280 GCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGAAAATAC 1804339
Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---ATCTAAAA 39306
| || | | ||||| || | | |||| | || | ||| ||| |||| ||
Sbjct 1804340 CTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATA---TAAAGCATCTTTATCTTGAA 1804396
Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366
|||| || |||||||| || ||||| || | ||| | || || ||||| || || ||||
Sbjct 1804397 TCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGGCATTAA 1804456
Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTT 39426
| || || |||||||||||
Sbjct 1804457 ACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAATACATTT 1804516
Query 39427 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACT 39486
||||||| | |||||| ||||| || ||| ||| | ||||||| |
Sbjct 1804517 CAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTGGCAGTT 1804576
Query 39487 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 39546
| ||||||| | | || ||||| || || ||| |||||||||||||| || ||||
Sbjct 1804577 GGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAGCAGCGA 1804636
Query 39547 AGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT----TTCCCAA 39602
| || |||||||| || ||||| | ||||||| || ||||| || |||| |
Sbjct 1804637 AAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATTTAATTTGTTGTTCCAAT 1804696
Query 39603 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTT 39662
|| ||| ||| || |||||| |||||||| ||||| || || ||| ||| ||||
Sbjct 1804697 CATCCAA-ATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCGGCTTTT 1804755
Query 39663 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTAttt 39722
||||| | | | || ||| || || ||| ||||| | ||||| || | |||
Sbjct 1804756 TTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATAACGACGTTTGTTT 1804815
Query 39723 ttttCTAATATCGGTTCT 39740
| || ||||| ||||||
Sbjct 1804816 TCTTGTAATAATGGTTCT 1804833
Score = 192 bits (212), Expect = 1e-43
Identities = 353/508 (69%), Gaps = 17/508 (3%)
Strand=Plus/Minus
Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892
||||||| ||||| ||| | ||||| || || || ||||| || | || ||||| |
Sbjct 1025725 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 1025666
Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAAT 38951
||| |||||||||||||| | |||||||| || || || ||| | || ||
Sbjct 1025665 CCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCAT-TACCAAAAGCAACCAAC 1025607
Query 38952 AATCTATCGGCCACAA-ATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010
||||||||||| |||| |||| |||||||| |||| || ||||||||||||||||| ||
Sbjct 1025606 AATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAA 1025548
Query 39011 TTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatta 39069
|| ||| | |||||| | || | ||||||| | || ||||||| | || |
Sbjct 1025547 AGAAACTGGAAGCGCATCACTGAAGTACTTCTTTT-CAATACTAACAGCTTCAGTGATAA 1025489
Query 39070 tcataattatattattttttgataatttatattt----aatatgattcgcatataGTAAA 39125
|| | || ||| || ||| |||| | ||||| | ||||||||
Sbjct 1025488 TCTT--TTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGA-----AAATAGTAAA 1025436
Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185
|| ||| |||| || || | ||||||||||||| | || |||||||| ||||||||
Sbjct 1025435 CAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAA 1025376
Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245
|||||||| || ||||| ||||| | ||| || || || || || | | |||||
Sbjct 1025375 CCTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAA 1025316
Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305
|| || || | | |||||||| | | |||| || |||||| || || ||| |
Sbjct 1025315 ATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA 1025256
Query 39306 ATCCAATTTATGGCCCAATCTGCttttt 39333
||||| | || ||||||||||||||||
Sbjct 1025255 ATCCATCTAATAGCCCAATCTGCTTTTT 1025228
>seq5
Length=745199
Score = 174 bits (192), Expect = 3e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898
|| ||||||||| | || || || || || ||||||| ||||| ||| || || ||
Sbjct 622546 AAAACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTC 622605
Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958
|| || | || |||| || |||||||||||||| ||||| ||||| ||||| || ||
Sbjct 622606 AGACAAGGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGG 622665
Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018
||| || |||||||||||||| ||||| ||| || ||| || || || || |||||
Sbjct 622666 TGGAATACCTTCTTTATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTC 622725
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||| ||||| |||||||||||||| ||||||| ||| || |||||
Sbjct 622726 GACTTCTAAGGTAATAGTTTTACCAGTTAAAGTTTTAACGAAAATTTGCAT 622776
Score = 89.7 bits (98), Expect = 9e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || || || || || ||||||| || || ||| || || ||
Sbjct 622775 ATACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGAATGTTGTAGTCA 622834
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| |||| || |||| || |||||||||||||||||||| ||||| ||||| || |||
Sbjct 622835 GACAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 622894
Query 171960 GG 171961
||
Sbjct 622895 GG 622896
>seq16
Length=329187
Score = 152 bits (168), Expect = 9e-32
Identities = 177/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
||| || ||||||||| | || || || || || || |||| || || || ||
Sbjct 297508 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTG 297449
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| || || |||| || | || |||||||||||||||||||| || ||||| |||||
Sbjct 297448 TAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGA 297389
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
|| ||||| || |||||||| ||||| |||||| ||| ||||| || || || ||
Sbjct 297388 TCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGATTTGACATTGTCAATGGTGTCGGAG 297329
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| ||||| | ||||| |||||||||||||| || || | ||| || ||||| ||
Sbjct 297328 GATTCGACTTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTT 297270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905134302870000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |