Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 268 2e-66 seq5 174 3e-38 seq16 152 9e-32 >seq1 Length=2377843 Score = 268 bits (296), Expect = 2e-66 Identities = 607/918 (66%), Gaps = 16/918 (2%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||||||||| ||||||||| | |||||||||||||| ||||| || | || || || Sbjct 1803924 TTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAATATT 1803983 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949 | ||| ||||| ||||| || | ||| ||| ||| | | || | || || ||| Sbjct 1803984 TTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCT-TGTTACCCAAGGCAAATA 1804042 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 |||||||||| || ||| ||||||||||||| |||| || ||||| ||||||||||||| Sbjct 1804043 ATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCCAATA 1804102 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || ||| | |||||| | | |||||||||| | || ||||||| ||| | Sbjct 1804103 AAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAACAATAA 1804162 Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129 || | || | |||| | || | | | | | | | | | | | ||||| | Sbjct 1804163 TCTT--TTCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-TGGGAGAACAACAAACAAG 1804219 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189 ||||||| |||||||||||||| || ||| | || |||||||| ||||| || |||| Sbjct 1804220 CAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCAAACCTG 1804279 Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249 |||| || ||||||||||| | ||| || || || ||||| || | ||||| |||| Sbjct 1804280 GCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGAAAATAC 1804339 Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---ATCTAAAA 39306 | || | | ||||| || | | |||| | || | ||| ||| |||| || Sbjct 1804340 CTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATA---TAAAGCATCTTTATCTTGAA 1804396 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| || |||||||| || ||||| || | ||| | || || ||||| || || |||| Sbjct 1804397 TCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGGCATTAA 1804456 Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTT 39426 | || || ||||||||||| Sbjct 1804457 ACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAATACATTT 1804516 Query 39427 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACT 39486 ||||||| | |||||| ||||| || ||| ||| | ||||||| | Sbjct 1804517 CAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTGGCAGTT 1804576 Query 39487 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 39546 | ||||||| | | || ||||| || || ||| |||||||||||||| || |||| Sbjct 1804577 GGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAGCAGCGA 1804636 Query 39547 AGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT----TTCCCAA 39602 | || |||||||| || ||||| | ||||||| || ||||| || |||| | Sbjct 1804637 AAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATTTAATTTGTTGTTCCAAT 1804696 Query 39603 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTT 39662 || ||| ||| || |||||| |||||||| ||||| || || ||| ||| |||| Sbjct 1804697 CATCCAA-ATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCGGCTTTT 1804755 Query 39663 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTAttt 39722 ||||| | | | || ||| || || ||| ||||| | ||||| || | ||| Sbjct 1804756 TTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATAACGACGTTTGTTT 1804815 Query 39723 ttttCTAATATCGGTTCT 39740 | || ||||| |||||| Sbjct 1804816 TCTTGTAATAATGGTTCT 1804833 Score = 192 bits (212), Expect = 1e-43 Identities = 353/508 (69%), Gaps = 17/508 (3%) Strand=Plus/Minus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 ||||||| ||||| ||| | ||||| || || || ||||| || | || ||||| | Sbjct 1025725 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 1025666 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAAT 38951 ||| |||||||||||||| | |||||||| || || || ||| | || || Sbjct 1025665 CCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCAT-TACCAAAAGCAACCAAC 1025607 Query 38952 AATCTATCGGCCACAA-ATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||||| |||| |||| |||||||| |||| || ||||||||||||||||| || Sbjct 1025606 AATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAA 1025548 Query 39011 TTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatta 39069 || ||| | |||||| | || | ||||||| | || ||||||| | || | Sbjct 1025547 AGAAACTGGAAGCGCATCACTGAAGTACTTCTTTT-CAATACTAACAGCTTCAGTGATAA 1025489 Query 39070 tcataattatattattttttgataatttatattt----aatatgattcgcatataGTAAA 39125 || | || ||| || ||| |||| | ||||| | |||||||| Sbjct 1025488 TCTT--TTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGA-----AAATAGTAAA 1025436 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || ||| |||| || || | ||||||||||||| | || |||||||| |||||||| Sbjct 1025435 CAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAA 1025376 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 |||||||| || ||||| ||||| | ||| || || || || || | | ||||| Sbjct 1025375 CCTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAA 1025316 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 || || || | | |||||||| | | |||| || |||||| || || ||| | Sbjct 1025315 ATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA 1025256 Query 39306 ATCCAATTTATGGCCCAATCTGCttttt 39333 ||||| | || |||||||||||||||| Sbjct 1025255 ATCCATCTAATAGCCCAATCTGCTTTTT 1025228 >seq5 Length=745199 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || || || || || ||||||| ||||| ||| || || || Sbjct 622546 AAAACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTC 622605 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || || | || |||| || |||||||||||||| ||||| ||||| ||||| || || Sbjct 622606 AGACAAGGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGG 622665 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || |||||||||||||| ||||| ||| || ||| || || || || ||||| Sbjct 622666 TGGAATACCTTCTTTATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTC 622725 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| |||||||||||||| ||||||| ||| || ||||| Sbjct 622726 GACTTCTAAGGTAATAGTTTTACCAGTTAAAGTTTTAACGAAAATTTGCAT 622776 Score = 89.7 bits (98), Expect = 9e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || ||||||| || || ||| || || || Sbjct 622775 ATACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGAATGTTGTAGTCA 622834 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| || |||||||||||||||||||| ||||| ||||| || ||| Sbjct 622835 GACAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 622894 Query 171960 GG 171961 || Sbjct 622895 GG 622896 >seq16 Length=329187 Score = 152 bits (168), Expect = 9e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || || |||| || || || || Sbjct 297508 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTG 297449 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || |||||||||||||||||||| || ||||| ||||| Sbjct 297448 TAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGA 297389 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || ||||| || |||||||| ||||| |||||| ||| ||||| || || || || Sbjct 297388 TCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGATTTGACATTGTCAATGGTGTCGGAG 297329 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| | ||||| |||||||||||||| || || | ||| || ||||| || Sbjct 297328 GATTCGACTTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTT 297270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134302870000