Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 4e-32
seq11 131 5e-25
seq16 100 8e-16
seq14 100 8e-16
seq3 84.2 6e-11
>seq1
Length=2377843
Score = 154 bits (170), Expect = 4e-32
Identities = 424/638 (66%), Gaps = 20/638 (3%)
Strand=Plus/Minus
Query 133203 ATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTC 133262
|||||| | ||||| |||||| ||||||| ||||| ||||| |||||||||||||
Sbjct 1804672 ATGAAAGATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTGTTG 1804613
Query 133263 TTGAAAATTT--AGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTT 133320
|||||| || ||| || ||| | ||||| |||||| | ||||| | ||
Sbjct 1804612 GTGAAAACTTGATTGAAAAC--TTTTCTGCCGAAGTCCAACTGCCAGAAGCTAAATCATT 1804555
Query 133321 TTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGA 133380
||||| | || || ||||||||| || |||||| | |||||| |||||||
Sbjct 1804554 CTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTATTAATTGA 1804495
Query 133381 TACTTACATCAAAGATACCGTCCAGAAGC--ACAAACTATTCAACGCCATTAGCGAATTT 133438
||||| | |||| ||| | |||||| | | || || |||||| | ||
Sbjct 1804494 AACTTATGTTAAAG--ACCCACAAGAAGCTGATTTCTTGTTTAATGCCATTGAAAACATT 1804437
Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498
|| ||||||| |||||| |||| ||||| || |||||||| || || || |||
Sbjct 1804436 CCATGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGATGCTTTA 1804377
Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558
| |||| | | ||||||||||||| | || || ||||| ||||||||| | ||
Sbjct 1804376 TATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCATT- 1804318
Query 133559 TGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGA 133617
||| ||||| || ||| | |||||| | ||| | | || || || ||| || || ||
Sbjct 1804317 TGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATGA 1804258
Query 133618 ACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATT 133677
| | || | || || || | | || || || ||||| ||| | ||| | ||
Sbjct 1804257 ATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCACTT 1804198
Query 133678 ---AGAGCGACCA-CTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAA 133733
| | ||||| ||| | || | ||||| | |||||| ||||| |||||
Sbjct 1804197 GCAACACAGACCATCTCCAGAA----ATTGTTGAAAAGATTATTGTTGAAGCTGTTGATG 1804142
Query 133734 TTGAGGTTGAATTTATCAATAGTGCTCTGCC-GTGCCGTTTAATTGGTATGAATGATGTG 133792
|||| |||| | ||| | |||||| || || | |||| | |||||||| ||
Sbjct 1804141 TTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTC-TTTATTGGGTATGAACTGTGAC 1804083
Query 133793 CTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATT 133830
||||| | ||| |||||| ||| ||||| |||||
Sbjct 1804082 TTGATGTGTCAATATGTTGAATATGTTGCTGATAGATT 1804045
Score = 150 bits (166), Expect = 5e-31
Identities = 210/294 (71%), Gaps = 3/294 (1%)
Strand=Plus/Plus
Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCG 156082
||| |||| || | ||||||| ||| |||||| ||||| ||||| ||||| ||
Sbjct 1848698 TGGTTCCAAGTATAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACG 1848757
Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142
|||||| || ||||| || | | ||||||||||||||| |||||||| ||||| || ||
Sbjct 1848758 AGCAGTGTTGTTGAAAACTCTGACCATAGGAATAATACCGTTGGAAGTACCATTAGTACC 1848817
Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202
||| | | ||||| || |||| || || || || | ||||||||||| | |
Sbjct 1848818 AGCAATGTAAGCACCAGTGGAACGAATGTTGTGGATGTGCAAACCAATACCACCAGCACT 1848877
Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262
|| |||||| ||| ||| || | ||||| | ||||||||||||| |||||||| |
Sbjct 1848878 CTTGGAAATTAAAGCACATGATTTCAAAGTATCGTAAATACCTTCAATGGAATCATCCTT 1848937
Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAA 156316
||| | || | | || ||| | ||| |||| ||| || || || |||||
Sbjct 1848938 CATAGCAAGCAAGAAACATGAAGACATTTGTGGTCTTGGGGTACCGGCATTGAA 1848991
Score = 129 bits (142), Expect = 2e-24
Identities = 350/529 (66%), Gaps = 15/529 (3%)
Strand=Plus/Plus
Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909
|| ||||| | ||||| | ||||||| ||| || ||||| | ||| || || ||
Sbjct 2272626 CTGTCAAAACGACCAGGTCTCATTAATGCCTTGTCCAAAATATCAGGTCTATTGGTACCT 2272685
Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969
|| || ||||| | || || | ||| |||||||| ||| | ||||||
Sbjct 2272686 GCTAACACAACGACGTGGTCAGTAGTATCAAACCCATCCATTTCAACTAACAATTGATTC 2272745
Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCC---GAATCGCTCCttttt 289026
| || ||| | ||||||||| | ||| ||| || || ||| | || |
Sbjct 2272746 AAGGTGGTTTCACGTTCATCATTAGCACCAGTTGCATTTCCTTTAGAA------CGTTGT 2272799
Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086
||||||| |||||||||||| |||| ||||| | | |||| ||||| ||| ||| |
Sbjct 2272800 TTACCAATAGCATCAATTTCATCAACGAAAACAATCGAAGGAGCATTTTCTCTAGCAGTC 2272859
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
||| || || | || | || || || | |||||| ||||||| ||||||||||||
Sbjct 2272860 TTAAACAAATCACGAACTCTTGAGGCACCTACACCAACGAACATTTCAACAAATTCAGAA 2272919
Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205
|||| || |||| ||||| ||| ||||| || || |||| | |||| | ||
Sbjct 2272920 CCGGAGAC-AGAATAGAATGGAACACCAGCTTCACCAGCAGTTGCCTTAGCCAACAAGGT 2272978
Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265
||||| || || ||||| || ||| | | | || |||| | ||| |||||
Sbjct 2272979 TTTACCAGTACCTGGTGGACCGGATAAAATAGCCCCTCTTGGGATTTTGGCCCCCAATTT 2273038
Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325
|| ||||| || || | | ||| |||| |||| |||| || ||| | ||| || ||
Sbjct 2273039 CTCGTATTTTTCGGGTTTTTGTAAGAATTTAACAAATTCCATAACTTCTTGTTTGGCTTC 2273098
Query 289326 ATCACAT-CCTGCTACATCAGCAAAAGTAATATTAATATCG--TTCTTG 289371
|| ||| || || ||||| || | || || |||||| ||||||
Sbjct 2273099 TTC-CATACCAGCAACATCTTTGAATTTGATCTTGATATCGGTTTCTTG 2273146
>seq11
Length=485753
Score = 131 bits (144), Expect = 5e-25
Identities = 341/514 (66%), Gaps = 12/514 (2%)
Strand=Plus/Plus
Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909
|||||||| ||||| | | ||| ||| || || ||||| | ||| || || |
Sbjct 332714 CTATCAAATCTACCTGGTCTCAATAAAGCTTTATCCAAAATATCAGGTCTATTGGTACCG 332773
Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969
|| || || |||| | || || | ||| |||||||| ||| | ||||||
Sbjct 332774 GCTAACACGACAACATGATCAGTCGTATCAAAACCATCCATTTCAACTAATAATTGATTC 332833
Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029
| || | ||| | |||||||||| ||| || | ||| || | |||| ||||
Sbjct 332834 AAAGTATTTTCACGTTCATCATTTCCACCAATT---TTACC---ATTACCTCTTTCTTTA 332887
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||| ||||||||||| |||| ||||| | | || | ||| ||| || || |
Sbjct 332888 CCAATGGCATCAATTTCATCAACAAAAATAATTGATGGGGCCATTTCTCTAGCGGTTTTA 332947
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
||||| || | || | || || |||| ||||||| |||||||||||||||||||| |
Sbjct 332948 AATAAATCACGAACTCTTGAAGCACCAACACCAACAAACATTTCTACAAATTCAGAACCA 333007
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
|| || | |||| ||| ||||| || || ||| | || | | || |||
Sbjct 333008 GAAACAGATAAAAATGGAACACCAGCTTCACCAGCAGTTGCTTTAGCTAATAAAGTTTTA 333067
Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT- 289268
|| || || || || || ||| | | | || |||| | ||| || || || ||
Sbjct 333068 CCAGTACCTGGAGGACCAGATAAAATAGCACCTCTTGGGATTTTAGCACC--CAATTTTT 333125
Query 289269 -ATATTTCTCAGGGCTCTT-TAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326
|||||| | | || |||| |||||||| |||| |||| || ||| | ||||| |||
Sbjct 333126 CATATTTTTGA-GGATCTTGTAAAAATTTAACAAATTCCATAATTTCTTCTTTTGATTCA 333184
Query 289327 TCACATCCTGCTACATCAGCAAAAGTAATATTAA 289360
||||||||||| || || ||| |||| ||||
Sbjct 333185 TCACATCCTGCAACGTCTTTAAATTTAATTTTAA 333218
>seq16
Length=329187
Score = 100 bits (110), Expect = 8e-16
Identities = 216/319 (68%), Gaps = 8/319 (3%)
Strand=Plus/Minus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA--ATT 289086
||||| ||||| | ||| || |||||||| | | || | |||| ||| || |||
Sbjct 65429 ACCAATGGCATCTAATTCATCGATGAAAATAATAGCAGGTGCTTTTTCTCTTGCTTGATT 65370
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
| |||||||| | | | || || | ||||||||||| ||| |||||||||||
Sbjct 65369 G--AATAATTCACGAATTCTTTTAGCACCCACACCAACATACAATTCATCAAATTCAGAA 65312
Query 289147 GCGGATACTTGA--ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
| | || ||| | |||| ||| |||||| || ||| ||| || |||| | |
Sbjct 65311 CC--AGACATGAAGAAAAATGGAACACCTGCTTCACCAGCTGTTGCTCTTGCCAATAAAG 65254
Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264
||||||| || || || || || ||||| || || ||||||| ||| | || |
Sbjct 65253 TCTTACCAGTACCTGGAGGGCCAGTTAATAATACACCTTTTGGTAATTTACCACCTAATG 65194
Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324
|| |||| ||| ||||||||||| |||||||| || | |||| | | || |
Sbjct 65193 CGGTAAATTTAGAAGGATCTTTTAAAAATTCAACAATTTCTTCTAATTCAGCTCTGGCTT 65134
Query 289325 CATCACATCCTGCTACATC 289343
||||||||||| |||||
Sbjct 65133 CATCACATCCTTGAACATC 65115
>seq14
Length=405284
Score = 100 bits (110), Expect = 8e-16
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612
||||||| || |||||||||||||| | ||| | |||||||| ||||||||||||||
Sbjct 4821 ATCATAATGAACCATAATGTCTTCCAAAGCCTTAACCAAACGACGTTGAATATAACCAGT 4762
Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672
| | || || || || |||||||| ||||| | | |||| |||| |||||||| ||
Sbjct 4761 TTCGGCAGTCTTGACGGCAGTATCAATAAGACCTTCTCTACCAGCCATCGCATGGAAAAA 4702
Query 302673 TAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730
| |||| | ||| | || | ||| | ||||| | ||||| ||||| | ||
Sbjct 4701 GAATTCTTGTGGAGTC-AAACCTCTCAA-ATAGGAGTTTTCAACAAAACCTTTTGATTCT 4644
Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
|| || | ||| ||||| || |||||||
Sbjct 4643 GGTGAGTAGTCATCTTTGGTGAAATGTGGCA 4613
>seq3
Length=1232947
Score = 84.2 bits (92), Expect = 6e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088
||||| |||||||| ||| |||| || || | ||| | || ||| || ||| |
Sbjct 1016869 ACCAATAGCATCAACTTCATCAAAAAATATAATACATGCTTTCTTAGTTCTTGCCATTTC 1016928
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
|||||||||||| || ||| || ||||||||| ||| || |||||||| |
Sbjct 1016929 AAATAATTCTCTAACCATTCTTGCACCTTCACCAACATATTTTTGCACCAATTCAGACCC 1016988
Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC-CAGAAGTGTCT 289207
|| ||||||| ||| ||| | | | ||| || || ||||| || ||| ||||
Sbjct 1016989 AATCACACGAATGAAAGTTGCATCAGTTCTGTTTGCAACGGCTCTCGCACACAAG-GTCT 1017047
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247
|||| || || |||||||| | |||| || ||||||||
Sbjct 1017048 TACCAGTACCTGGTGGTCCATACAATAAAATACCCTTTGG 1017087
Score = 84.2 bits (92), Expect = 6e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332
||||| ||||||||||||||||| | ||||| ||||| | ||||| ||||||||| |
Sbjct 1156073 GCACCATGAGCAATCATACAATCTCTCTCCATCTCACCGAAACGCAAACCACCATCTCTG 1156014
Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392
|| ||||| | || | ||| | || ||||| |||||| ||| | | ||
Sbjct 1156013 GATCTACCTTCAACAGGTTGTCTTGTCAAAACTTGCACTGGACCTCTAGCTCTAGCATGG 1155954
Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAA 233441
|| ||||| | |||||||| ||| ||| ||||||| |||||||
Sbjct 1155953 ATCTTATCATCCACCATATGTCTCAATCTTTGATAATAAGTAGGACCAA 1155905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471814771350550
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