Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 154 4e-32 seq11 131 5e-25 seq16 100 8e-16 seq14 100 8e-16 seq3 84.2 6e-11 >seq1 Length=2377843 Score = 154 bits (170), Expect = 4e-32 Identities = 424/638 (66%), Gaps = 20/638 (3%) Strand=Plus/Minus Query 133203 ATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTC 133262 |||||| | ||||| |||||| ||||||| ||||| ||||| ||||||||||||| Sbjct 1804672 ATGAAAGATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTGTTG 1804613 Query 133263 TTGAAAATTT--AGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTT 133320 |||||| || ||| || ||| | ||||| |||||| | ||||| | || Sbjct 1804612 GTGAAAACTTGATTGAAAAC--TTTTCTGCCGAAGTCCAACTGCCAGAAGCTAAATCATT 1804555 Query 133321 TTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGA 133380 ||||| | || || ||||||||| || |||||| | |||||| ||||||| Sbjct 1804554 CTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTATTAATTGA 1804495 Query 133381 TACTTACATCAAAGATACCGTCCAGAAGC--ACAAACTATTCAACGCCATTAGCGAATTT 133438 ||||| | |||| ||| | |||||| | | || || |||||| | || Sbjct 1804494 AACTTATGTTAAAG--ACCCACAAGAAGCTGATTTCTTGTTTAATGCCATTGAAAACATT 1804437 Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498 || ||||||| |||||| |||| ||||| || |||||||| || || || ||| Sbjct 1804436 CCATGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGATGCTTTA 1804377 Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 | |||| | | ||||||||||||| | || || ||||| ||||||||| | || Sbjct 1804376 TATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCATT- 1804318 Query 133559 TGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGA 133617 ||| ||||| || ||| | |||||| | ||| | | || || || ||| || || || Sbjct 1804317 TGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATGA 1804258 Query 133618 ACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATT 133677 | | || | || || || | | || || || ||||| ||| | ||| | || Sbjct 1804257 ATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCACTT 1804198 Query 133678 ---AGAGCGACCA-CTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAA 133733 | | ||||| ||| | || | ||||| | |||||| ||||| ||||| Sbjct 1804197 GCAACACAGACCATCTCCAGAA----ATTGTTGAAAAGATTATTGTTGAAGCTGTTGATG 1804142 Query 133734 TTGAGGTTGAATTTATCAATAGTGCTCTGCC-GTGCCGTTTAATTGGTATGAATGATGTG 133792 |||| |||| | ||| | |||||| || || | |||| | |||||||| || Sbjct 1804141 TTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTC-TTTATTGGGTATGAACTGTGAC 1804083 Query 133793 CTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATT 133830 ||||| | ||| |||||| ||| ||||| ||||| Sbjct 1804082 TTGATGTGTCAATATGTTGAATATGTTGCTGATAGATT 1804045 Score = 150 bits (166), Expect = 5e-31 Identities = 210/294 (71%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCG 156082 ||| |||| || | ||||||| ||| |||||| ||||| ||||| ||||| || Sbjct 1848698 TGGTTCCAAGTATAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACG 1848757 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 |||||| || ||||| || | | ||||||||||||||| |||||||| ||||| || || Sbjct 1848758 AGCAGTGTTGTTGAAAACTCTGACCATAGGAATAATACCGTTGGAAGTACCATTAGTACC 1848817 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||| | | ||||| || |||| || || || || | ||||||||||| | | Sbjct 1848818 AGCAATGTAAGCACCAGTGGAACGAATGTTGTGGATGTGCAAACCAATACCACCAGCACT 1848877 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || |||||| ||| ||| || | ||||| | ||||||||||||| |||||||| | Sbjct 1848878 CTTGGAAATTAAAGCACATGATTTCAAAGTATCGTAAATACCTTCAATGGAATCATCCTT 1848937 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAA 156316 ||| | || | | || ||| | ||| |||| ||| || || || ||||| Sbjct 1848938 CATAGCAAGCAAGAAACATGAAGACATTTGTGGTCTTGGGGTACCGGCATTGAA 1848991 Score = 129 bits (142), Expect = 2e-24 Identities = 350/529 (66%), Gaps = 15/529 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | ||||| | ||||||| ||| || ||||| | ||| || || || Sbjct 2272626 CTGTCAAAACGACCAGGTCTCATTAATGCCTTGTCCAAAATATCAGGTCTATTGGTACCT 2272685 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || || ||||| | || || | ||| |||||||| ||| | |||||| Sbjct 2272686 GCTAACACAACGACGTGGTCAGTAGTATCAAACCCATCCATTTCAACTAACAATTGATTC 2272745 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCC---GAATCGCTCCttttt 289026 | || ||| | ||||||||| | ||| ||| || || ||| | || | Sbjct 2272746 AAGGTGGTTTCACGTTCATCATTAGCACCAGTTGCATTTCCTTTAGAA------CGTTGT 2272799 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||| |||||||||||| |||| ||||| | | |||| ||||| ||| ||| | Sbjct 2272800 TTACCAATAGCATCAATTTCATCAACGAAAACAATCGAAGGAGCATTTTCTCTAGCAGTC 2272859 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||| || || | || | || || || | |||||| ||||||| |||||||||||| Sbjct 2272860 TTAAACAAATCACGAACTCTTGAGGCACCTACACCAACGAACATTTCAACAAATTCAGAA 2272919 Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 |||| || |||| ||||| ||| ||||| || || |||| | |||| | || Sbjct 2272920 CCGGAGAC-AGAATAGAATGGAACACCAGCTTCACCAGCAGTTGCCTTAGCCAACAAGGT 2272978 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||||| || || ||||| || ||| | | | || |||| | ||| ||||| Sbjct 2272979 TTTACCAGTACCTGGTGGACCGGATAAAATAGCCCCTCTTGGGATTTTGGCCCCCAATTT 2273038 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||||| || || | | ||| |||| |||| |||| || ||| | ||| || || Sbjct 2273039 CTCGTATTTTTCGGGTTTTTGTAAGAATTTAACAAATTCCATAACTTCTTGTTTGGCTTC 2273098 Query 289326 ATCACAT-CCTGCTACATCAGCAAAAGTAATATTAATATCG--TTCTTG 289371 || ||| || || ||||| || | || || |||||| |||||| Sbjct 2273099 TTC-CATACCAGCAACATCTTTGAATTTGATCTTGATATCGGTTTCTTG 2273146 >seq11 Length=485753 Score = 131 bits (144), Expect = 5e-25 Identities = 341/514 (66%), Gaps = 12/514 (2%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||| ||| || || ||||| | ||| || || | Sbjct 332714 CTATCAAATCTACCTGGTCTCAATAAAGCTTTATCCAAAATATCAGGTCTATTGGTACCG 332773 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || || || |||| | || || | ||| |||||||| ||| | |||||| Sbjct 332774 GCTAACACGACAACATGATCAGTCGTATCAAAACCATCCATTTCAACTAATAATTGATTC 332833 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | || | ||| | |||||||||| ||| || | ||| || | |||| |||| Sbjct 332834 AAAGTATTTTCACGTTCATCATTTCCACCAATT---TTACC---ATTACCTCTTTCTTTA 332887 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||||||||| |||| ||||| | | || | ||| ||| || || | Sbjct 332888 CCAATGGCATCAATTTCATCAACAAAAATAATTGATGGGGCCATTTCTCTAGCGGTTTTA 332947 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || | || | || || |||| ||||||| |||||||||||||||||||| | Sbjct 332948 AATAAATCACGAACTCTTGAAGCACCAACACCAACAAACATTTCTACAAATTCAGAACCA 333007 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || | |||| ||| ||||| || || ||| | || | | || ||| Sbjct 333008 GAAACAGATAAAAATGGAACACCAGCTTCACCAGCAGTTGCTTTAGCTAATAAAGTTTTA 333067 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT- 289268 || || || || || || ||| | | | || |||| | ||| || || || || Sbjct 333068 CCAGTACCTGGAGGACCAGATAAAATAGCACCTCTTGGGATTTTAGCACC--CAATTTTT 333125 Query 289269 -ATATTTCTCAGGGCTCTT-TAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 |||||| | | || |||| |||||||| |||| |||| || ||| | ||||| ||| Sbjct 333126 CATATTTTTGA-GGATCTTGTAAAAATTTAACAAATTCCATAATTTCTTCTTTTGATTCA 333184 Query 289327 TCACATCCTGCTACATCAGCAAAAGTAATATTAA 289360 ||||||||||| || || ||| |||| |||| Sbjct 333185 TCACATCCTGCAACGTCTTTAAATTTAATTTTAA 333218 >seq16 Length=329187 Score = 100 bits (110), Expect = 8e-16 Identities = 216/319 (68%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA--ATT 289086 ||||| ||||| | ||| || |||||||| | | || | |||| ||| || ||| Sbjct 65429 ACCAATGGCATCTAATTCATCGATGAAAATAATAGCAGGTGCTTTTTCTCTTGCTTGATT 65370 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | |||||||| | | | || || | ||||||||||| ||| ||||||||||| Sbjct 65369 G--AATAATTCACGAATTCTTTTAGCACCCACACCAACATACAATTCATCAAATTCAGAA 65312 Query 289147 GCGGATACTTGA--ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | || ||| | |||| ||| |||||| || ||| ||| || |||| | | Sbjct 65311 CC--AGACATGAAGAAAAATGGAACACCTGCTTCACCAGCTGTTGCTCTTGCCAATAAAG 65254 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 ||||||| || || || || || ||||| || || ||||||| ||| | || | Sbjct 65253 TCTTACCAGTACCTGGAGGGCCAGTTAATAATACACCTTTTGGTAATTTACCACCTAATG 65194 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 || |||| ||| ||||||||||| |||||||| || | |||| | | || | Sbjct 65193 CGGTAAATTTAGAAGGATCTTTTAAAAATTCAACAATTTCTTCTAATTCAGCTCTGGCTT 65134 Query 289325 CATCACATCCTGCTACATC 289343 ||||||||||| ||||| Sbjct 65133 CATCACATCCTTGAACATC 65115 >seq14 Length=405284 Score = 100 bits (110), Expect = 8e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || |||||||||||||| | ||| | |||||||| |||||||||||||| Sbjct 4821 ATCATAATGAACCATAATGTCTTCCAAAGCCTTAACCAAACGACGTTGAATATAACCAGT 4762 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || || || |||||||| ||||| | | |||| |||| |||||||| || Sbjct 4761 TTCGGCAGTCTTGACGGCAGTATCAATAAGACCTTCTCTACCAGCCATCGCATGGAAAAA 4702 Query 302673 TAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 | |||| | ||| | || | ||| | ||||| | ||||| ||||| | || Sbjct 4701 GAATTCTTGTGGAGTC-AAACCTCTCAA-ATAGGAGTTTTCAACAAAACCTTTTGATTCT 4644 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 || || | ||| ||||| || ||||||| Sbjct 4643 GGTGAGTAGTCATCTTTGGTGAAATGTGGCA 4613 >seq3 Length=1232947 Score = 84.2 bits (92), Expect = 6e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| ||| |||| || || | ||| | || ||| || ||| | Sbjct 1016869 ACCAATAGCATCAACTTCATCAAAAAATATAATACATGCTTTCTTAGTTCTTGCCATTTC 1016928 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||||||||| || ||| || ||||||||| ||| || |||||||| | Sbjct 1016929 AAATAATTCTCTAACCATTCTTGCACCTTCACCAACATATTTTTGCACCAATTCAGACCC 1016988 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC-CAGAAGTGTCT 289207 || ||||||| ||| ||| | | | ||| || || ||||| || ||| |||| Sbjct 1016989 AATCACACGAATGAAAGTTGCATCAGTTCTGTTTGCAACGGCTCTCGCACACAAG-GTCT 1017047 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 |||| || || |||||||| | |||| || |||||||| Sbjct 1017048 TACCAGTACCTGGTGGTCCATACAATAAAATACCCTTTGG 1017087 Score = 84.2 bits (92), Expect = 6e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| ||||||||||||||||| | ||||| ||||| | ||||| ||||||||| | Sbjct 1156073 GCACCATGAGCAATCATACAATCTCTCTCCATCTCACCGAAACGCAAACCACCATCTCTG 1156014 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 || ||||| | || | ||| | || ||||| |||||| ||| | | || Sbjct 1156013 GATCTACCTTCAACAGGTTGTCTTGTCAAAACTTGCACTGGACCTCTAGCTCTAGCATGG 1155954 Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAA 233441 || ||||| | |||||||| ||| ||| ||||||| ||||||| Sbjct 1155953 ATCTTATCATCCACCATATGTCTCAATCTTTGATAATAAGTAGGACCAA 1155905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814771350550