Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq1 163 4e-35 seq21 93.3 5e-14 seq16 87.8 2e-12 >seq1 Length=2377843 Score = 163 bits (180), Expect = 4e-35 Identities = 425/640 (66%), Gaps = 26/640 (4%) Strand=Plus/Minus Query 172322 ACATTTAGAATTTGATTTAAGTAGTGGAACTATACCATTGCTTACTACaaaaaaaaTTGT 172381 ||| ||| |||||||||| | || || | |||||| | ||||| || ||| || Sbjct 1090947 ACAATTAAGATTTGATTTATCAAATGATACATTTCCATTGTTAACTACCAAGAAA---GT 1090891 Query 172382 ATATACTAA---TATCCTCAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAA 172438 | | |||| |||| | | ||| | |||||| ||||| || ||||| ||| | || Sbjct 1090890 CTTTTCTAAAGGTATCATTCATGAATTATTATGGTTTATTGCTGGATCAACCGATGCTAA 1090831 Query 172439 ACAATTAAATGATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGA 172498 | |||| | | |||||||||| ||||| | | |||||| |||||||| |||||||| Sbjct 1090830 AATTTTAACCAACAAAGGTGTTAAAATTTGGGAAGGTAATGGATCTCGTGAGTTTTTAGA 1090771 Query 172499 TTTATGCGGGTTTACTGAAAGAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATG 172558 | | || || ||| | | ||||||||||| || ||| ||||||| || ||||| Sbjct 1090770 TAAGTTAGGATTGACTCATCGTCGTGAAGGTGATTTGGGACCAGTTTATGGTTTCCAATG 1090711 Query 172559 GAGACATGCAGGGGCTCAATATATCGACTGTGATACAGATTACACAGGACAAGGAGTGGA 172618 |||||| || ||| |||||| || |||||| | ||||| || |||||||| || Sbjct 1090710 GAGACACTTTGGTGCTGAATATAAAGATTGTGATGCTGATTATACTGGACAAGGTTATGA 1090651 Query 172619 CCAATT--AAGTCAAACTATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTA 172676 || || ||| | | ||||| | ||| | ||||||| | |||||| || | Sbjct 1090650 TCAGTTGCAAG--ATATCATTAAGAAATTAAAGTCCAACCCATATGATAGAAGAATAATC 1090593 Query 172677 ATTGATAGTTGGAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCAT-ACTTT 172735 || | |||||| ||| | |||||||||||| | | ||||| || ||| |||| Sbjct 1090592 ATGAGTGCCTGGAATCCACCAGATTTTGATAAAATGGCTTTACCTCCATGTCATGTCTTT 1090533 Query 172736 AGCACAATTTTATGT--------CAGaaaa----aaaTCAATCTTAGATTGTCAGTTATA 172783 | ||||| ||||| ||||||| ||| | | ||| ||| || || Sbjct 1090532 TG-TCAATTCTATGTTAATTTCCCAGAAAACGCTAAACCTAAATTATCATGTTTATTGTA 1090474 Query 172784 TCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTGGATTTTATTCATTTTT 172843 ||| ||||| |||| | || ||||| || |||| || |||| | ||| | || || Sbjct 1090473 TCAGAGATCTTGTGATATGGGTTTGGGAGTTCCTTTCAACATTGCTTCCTATGCTTTGTT 1090414 Query 172844 AA-TACTTGTGTTAAGTAAATGGTGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTG 172902 || || || | |||| || | | || | |||||||||||| | | Sbjct 1090413 AACTAAGATGATTGCTCATGTGGT-TGATATGGATTGTGGTGAATTTATTCATACTATGG 1090355 Query 172903 GAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAA 172942 | |||| ||||||||||| ||||||| || |||| || Sbjct 1090354 GTGATGCTCACGTGTATTTGGATCATGTGGATGCTTTGAA 1090315 >seq21 Length=244291 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 194590 ATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCAT 194649 ||||| | || || | |||||| || | ||||| |||||| ||||||||||||| Sbjct 1925 ATTTTCTTTGGTCCTATTTATTATCAAAAATTGAAACATATGGTTTTGGATAAAATGCAT 1866 Query 194650 GCTAGAAGTCATGGGCAAGTAACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAA 194709 || ||| | || | | | || |||| ||||||||| | ||| | || | Sbjct 1865 GCAAGAGCTAGAGGTCCAAGAGCTGTTTTAACAAGACAACCAACTGAAGGTAGATCAAGA 1806 Query 194710 GGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACT 194769 | ||| ||||| ||||| || || ||||||| ||| ||| || | | | |||||||| || Sbjct 1805 GATGGTGGTTTGAGATTGGGTGAGATGGAAAGAGATTGTGTTATTGCCTATGGTGCTTCT 1746 Query 194770 CAATTCTTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACA 194829 || || ||| |||||| | | | | ||| ||| | ||| | || |||||||| | Sbjct 1745 CAGTTGTTATTGGAAAGATTAATGATTTCTTCCGATGCATTTGAGGTAGATGTTTGTAAC 1686 Query 194830 GAATGTGGT 194838 | |||||| Sbjct 1685 AAGTGTGGT 1677 >seq16 Length=329187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 257/388 (66%), Gaps = 20/388 (5%) Strand=Plus/Plus Query 165950 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA 166009 ||||||||||||||||| ||||||||| ||| | || | |||| | |||||||| Sbjct 113426 ATTAAGGTTGCTCAATTGGCTGGGTATGTAAGTGAAAACACTGGTTATCATCATGGTGAG 113485 Query 166010 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT- 166068 ||| || | | || || ||| ||| || ||| | ||||||||| | |||||||| Sbjct 113486 CAATCATTGGTTCAGACCATCATTGGGTTGGCACAAAACTTTGTTGGTTCTAATAATATC 113545 Query 166069 AGCATTACTT-GAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTG 166127 | ||| ||| |||| ||||| ||||||| ||| | || |||||||||| Sbjct 113546 AACAT--CTTAAAACCAAATGGTTCCTTTGGTAGTAGAGCCGCTGGTGGTAAAGATTTCT 113603 Query 166128 CTGCATCAAGATATATTTATACCAAACCACAT-AAAATATTAAAATATATATTTAGAGAA 166186 | || | |||||||||| || || || ||| || || || | ||||| | | Sbjct 113604 CCGCTGCGAGATATATTTTCACAGAATTGAATGAAATTACTAGAA-AGATATTCAATCCA 113662 Query 166187 GAAGATGACCCTATTTTA-AATTATACTGTTGAGGGTGAAC---CTATTCA--------- 166233 ||||| || ||| || |||||| | || | ||||| || || | Sbjct 113663 TTGGATGATCC-ATTGTATAATTATGTTCAAGATGATGAACAAACTGTTGAACCAGAGTG 113721 Query 166234 TTTTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATG 166293 | | |||| || | ||| | |||||| | |||||| || |||||||| || || || Sbjct 113722 GTATCTTCCTGTTTTGCCAATGATTTTAGTCAATGGTGCTGAAGGTATTGGTACTGGTTG 113781 Query 166294 GTCATGTTTTATACCTCAATATAATCCT 166321 |||| | ||| ||| ||||||||| Sbjct 113782 GTCAACTAATATTCCTTCTTATAATCCT 113809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632488414082000