Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5 122 7e-23 seq16 120 2e-22 >seq5 Length=745199 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || ||||||||||| || ||||| |||||| | ||| || || Sbjct 622776 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAATCTTCT 622717 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| || || ||||||||||| | || ||||| Sbjct 622716 GACACCATTGATAACGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 622657 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| || |||||||| | || |||| | ||| || | ||||||||| Sbjct 622656 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACCTTGTCTGACTACAAC 622597 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| || ||||| |||||| |||| ||||||||| |||| || Sbjct 622596 ATTCAAAAAGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 622550 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| || ||| | |||| ||| |||||||| | || |||| | ||| || | ||| Sbjct 622890 GATCAACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTGTCTGAC 622831 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||||| ||||| |||||| |||| ||||||||| |||| || Sbjct 622830 TACAACATTCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 622778 >seq16 Length=329187 Score = 120 bits (132), Expect = 2e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 107551 TTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||||| ||||||||||| ||||| || ||||| || ||||| |||||| | ||| || Sbjct 297267 TTAAAGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAA 297326 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | ||| || | | | | || ||| || || || |||||||| | || Sbjct 297327 TCCTCCGACACCATTGACAATGTCAAATCTAAAATCCAAGACAAAGAAGGTATTCCACCA 297386 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| || ||| | || | ||| |||||||| |||| || | | ||| || | ||| Sbjct 297387 GATCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGAC 297446 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| |||||||| ||||| |||||| |||| ||||||||| |||| || Sbjct 297447 TACAACATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGG 297499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876070803350