Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1 158 2e-33 seq16 96.9 4e-15 seq2 93.3 5e-14 seq21 89.7 7e-13 >seq1 Length=2377843 Score = 158 bits (174), Expect = 2e-33 Identities = 385/574 (67%), Gaps = 27/574 (5%) Strand=Plus/Minus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587 ||| | |||||| |||| || ||||| ||| | ||| |||| | | ||||||| Sbjct 1090868 GAATTATTATGGTTTATTGCTGGATCAACCGATGCTAAAATTTTAACCAACAAAGGTGTT 1090809 Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647 ||| ||||| | | |||||| |||||||| ||||||||| | || || || | | Sbjct 1090808 AAAATTTGGGAAGGTAATGGATCTCGTGAGTTTTTAGATAAGTTAGGATTGACTCATCGT 1090749 Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATAT 168707 ||||||||||| || ||| ||||||| || ||||||||||| || ||| ||||| Sbjct 1090748 CGTGAAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAGACACTTTGGTGCTGAATAT 1090689 Query 168708 ATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATT--AAGTCAAACTATAA 168765 | || |||||| | ||||| || |||||||| || || || ||| | | || | Sbjct 1090688 AAAGATTGTGATGCTGATTATACTGGACAAGGTTATGATCAGTTGCAAG--ATATCATTA 1090631 Query 168766 ATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGTACCAC 168825 | | ||| | ||| || | ||||||||||| | || | | ||| || |||| Sbjct 1090630 AGAAATTAAAGTCCAACCCATATGATAGAAGAATAATCATGAGTGCCTGGAATCCACCAG 1090571 Query 168826 AACTTGATAAAATGGTTCTTCCCCCTTGTCA-CACTTTAGTGCAATTTTATGTAA----- 168879 | |||||||||||| | | || || ||||| |||| || ||||| ||||| | Sbjct 1090570 ATTTTGATAAAATGGCTTTACCTCCATGTCATGTCTTTTGT-CAATTCTATGTTAATTTC 1090512 Query 168880 --GGAAAAAATCAATCTTAGATTGTCA-----GTTGTATCAAAGATCAGCTGATTTAGGA 168932 ||||| || | || ||| ||| |||||||| ||||| |||| | || Sbjct 1090511 CCAGAAAACGCTAAACCTAAATTATCATGTTTATTGTATCAGAGATCTTGTGATATGGGT 1090452 Query 168933 TTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAAC--ACTTG--TGCTAAGTAA 168988 || ||||| |||| || |||| | ||| | || ||||| | || |||| | Sbjct 1090451 TTGGGAGTTCCTTTCAACATTGCTTCCTATGCTTTGTTAACTAAGATGATTGCT---CAT 1090395 Query 168989 ATGGTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTC 169048 |||| | || || ||| | |||||||||||| | || |||| ||||||||||| Sbjct 1090394 GTGGT-TGATATGGATTGTGGTGAATTTATTCATACTATGGGTGATGCTCACGTGTATTT 1090336 Query 169049 AAACCATGTTGAACCTTTAAAGGTTCAA-TTGAA 169081 | ||||| || |||| || | ||| ||||| Sbjct 1090335 GGATCATGTGGATGCTTTGAAAGAACAACTTGAA 1090302 >seq16 Length=329187 Score = 96.9 bits (106), Expect = 4e-15 Identities = 309/466 (66%), Gaps = 34/466 (7%) Strand=Plus/Plus Query 162924 TTGATGGTCTTAAAGAATCTCAAAGAAAGGTTATTTATGCC---AT-AAGaaaaaaaTTT 162979 |||||||| | ||| | ||||||||| ||| | |||| || ||||||||| || Sbjct 113358 TTGATGGTTTGAAACCAGGTCAAAGAAAAGTTTTGTATGGTTGTATCAAGAAAAAA--TT 113415 Query 162980 AGATCAAAAGGGGATTTTATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACA 163039 | ||||| | | ||||||||||||||||| ||||||||| ||| | || Sbjct 113416 A----AAAAGTGAA----ATTAAGGTTGCTCAATTGGCTGGGTATGTAAGTGAAAACACT 113467 Query 163040 GACTATAAACACGGTGAACAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTT 163099 | ||| | || ||||| ||| || | | || || ||| ||| || ||| | ||| Sbjct 113468 GGTTATCATCATGGTGAGCAATCATTGGTTCAGACCATCATTGGGTTGGCACAAAACTTT 113527 Query 163100 GTTGGTACAAATAATAT-AGCATTACTT-GAACCTGATGGTCAATTTGGTACCAGATTAG 163157 |||||| | |||||||| | ||| ||| |||| ||||| ||||||| ||| | Sbjct 113528 GTTGGTTCTAATAATATCAACAT--CTTAAAACCAAATGGTTCCTTTGGTAGTAGAGCCG 113585 Query 163158 AAGGAGGTAAAGATTCTGCGGCATCAAGATATATTTATACCAAACCAAAT-AAAATATTA 163216 || |||||||||| | || | |||||||||| || || ||| ||| || || Sbjct 113586 CTGGTGGTAAAGATTTCTCCGCTGCGAGATATATTTTCACAGAATTGAATGAAATTACTA 113645 Query 163217 AAATATATATTTAGAGAAGAAGATGACCCTATTTTA-AATTATACTGTTGAGGGTGAAC- 163274 || | ||||| | | ||||| || ||| || |||||| | || | ||||| Sbjct 113646 GAA-AGATATTCAATCCATTGGATGATCC-ATTGTATAATTATGTTCAAGATGATGAACA 113703 Query 163275 --CTGTTCA-------TTTTATC--CCAGTGATTCCATTAATTTTAATTAATGGTTCTAT 163323 ||||| | | |||| || || | ||| | |||||| | |||||| || Sbjct 113704 AACTGTTGAACCAGAGTGGTATCTTCCTGTTTTGCCAATGATTTTAGTCAATGGTGCTGA 113763 Query 163324 TGGTATTGGAACAGGATGGTCATGTTTTATCCCTCAATATAATCCT 163369 |||||||| || || |||||| | ||| ||| ||||||||| Sbjct 113764 AGGTATTGGTACTGGTTGGTCAACTAATATTCCTTCTTATAATCCT 113809 >seq2 Length=1666313 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 51875 TGATGATGTACTATTA--AATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTT 51932 ||||| ||| ||||| ||| | |||||||| | ||||||||||||||| || | Sbjct 1078747 TGATGTTGT--TATTATGAATCGTCAACCAACTTTGCATAAAGCTTCTATGATGGGTCAT 1078804 Query 51933 AAAGTTAAAATTCAACCAG-TAAAAACA-TTTAAAATGA-ATTTGGCTATGACTAAAGCA 51989 ||||| | | || ||||| | |||| | ||||| || | ||| |||| ||| || Sbjct 1078805 AAAGTCAGAGTTTTACCAGGTGAAAAGACTTTAAGATTACATTATGCTAATACTGGTGCT 1078864 Query 51990 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 52037 |||||||| ||||||||||| |||||||||||| | ||| | || ||| Sbjct 1078865 TATAATGCCGATTTTGATGGTGATGAAATGAATATGCATTTCCCACAA 1078912 >seq21 Length=244291 Score = 89.7 bits (98), Expect = 7e-13 Identities = 187/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 193768 TTACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTA 193827 ||||||| || | || || | | ||||| | || || | ||||||||| | | Sbjct 1951 TTACTGGAGAATGTCTTCAAGCTTATATTTTCTTTGGTCCTATTTATTATCAAAAATTGA 1892 Query 193828 AACATATGGTTAAGGATAAAATGCATGCTAGAAGT-CATGGACAAGTGACTACTTTACAT 193886 ||||||||||| ||||||||||||||| ||| | | | |||| | || |||| Sbjct 1891 AACATATGGTTTTGGATAAAATGCATGCAAGAGCTAGAGGTCCAAGAG-CTGTTTTAACA 1833 Query 193887 CGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAA 193946 ||||||||| | ||| | || || ||| ||||| ||||| || || ||||| | | Sbjct 1832 AGACAACCAACTGAAGGTAGATCAAGAGATGGTGGTTTGAGATTGGGTGAGATGGAAAGA 1773 Query 193947 GACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAAAGAATGTTTTTGTATTCT 194006 || ||| || | | |||||||| |||| || || |||||| | | | | ||| Sbjct 1772 GATTGTGTTATTGCCTATGGTGCTTCTCAGTTGTTATTGGAAAGATTAATGATTTCTTCC 1713 Query 194007 GATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGT 194042 ||| | ||| | || |||||||| | | |||||| Sbjct 1712 GATGCATTTGAGGTAGATGTTTGTAACAAGTGTGGT 1677 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 193445 ACCTGAAATAGGGGATAAATTTTGTTCAGGAATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 ||| ||| | || |||||||||| || || | ||||| || |||||| || || Sbjct 2259 ACCGGAATTGGGTGATAAATTTTCATCTAGACACGGGCAAAAGGGTGTTTGTGGGATTAT 2200 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAA 193564 | | |||||||||||||||||||| | || ||||| |||||||||||||| || Sbjct 2199 TGTTCAACAAGAAGATATGCCATTTAATGATTATGGTATTTCCCCAGATATTATTATGAA 2140 Query 193565 TCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||| || || | ||||| | ||||| || | |||| |||| Sbjct 2139 TCCACATGGTTTCCCATCTCGTATGACGGTTGGTAAAATGATTG 2096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635176409042000