Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_023615.1
Length=196456
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 2e-32
seq21 93.3 5e-14
seq2 93.3 5e-14
seq16 82.4 1e-10
>seq1
Length=2377843
Score = 154 bits (170), Expect = 2e-32
Identities = 423/640 (66%), Gaps = 26/640 (4%)
Strand=Plus/Minus
Query 171534 ACATTTAGAATTTGATTTAAGTAGTGGAACTATACCATTACTTACTACaaaaaaaaTTGT 171593
||| ||| |||||||||| | || || | ||||| | ||||| || ||| ||
Sbjct 1090947 ACAATTAAGATTTGATTTATCAAATGATACATTTCCATTGTTAACTACCAAGAAA---GT 1090891
Query 171594 ATATACTAA---TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAA 171650
| | |||| |||| || | ||| | |||||| ||||| || ||||| ||| | ||
Sbjct 1090890 CTTTTCTAAAGGTATCATTCATGAATTATTATGGTTTATTGCTGGATCAACCGATGCTAA 1090831
Query 171651 ACAATTAAATGATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGA 171710
| |||| | | |||||||||| ||||| | | |||||| |||||||| ||||||||
Sbjct 1090830 AATTTTAACCAACAAAGGTGTTAAAATTTGGGAAGGTAATGGATCTCGTGAGTTTTTAGA 1090771
Query 171711 TTTATGCGGGTTTACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATG 171770
| | || || ||| | | ||||||||||| || ||| ||||||| || |||||
Sbjct 1090770 TAAGTTAGGATTGACTCATCGTCGTGAAGGTGATTTGGGACCAGTTTATGGTTTCCAATG 1090711
Query 171771 GAGACATGCAGGGGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGA 171830
|||||| || ||| |||||| || ||| || | ||||| || |||||||| ||
Sbjct 1090710 GAGACACTTTGGTGCTGAATATAAAGATTGTGATGCTGATTATACTGGACAAGGTTATGA 1090651
Query 171831 CCAATT--AAGTCAAACTATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTA 171888
|| || ||| | | ||||| | ||| | ||||||| | |||||| || |
Sbjct 1090650 TCAGTTGCAAG--ATATCATTAAGAAATTAAAGTCCAACCCATATGATAGAAGAATAATC 1090593
Query 171889 ATTGATAGTTGGAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCA-CACTTT 171947
|| | |||||| ||| | |||||||||||| | | ||||| || || ||||
Sbjct 1090592 ATGAGTGCCTGGAATCCACCAGATTTTGATAAAATGGCTTTACCTCCATGTCATGTCTTT 1090533
Query 171948 AGCACAATTTTATGT--------CAGaaaa----aaaTCAATCTTAGATTGTCAGTTATA 171995
| ||||| ||||| ||||||| ||| | | ||| ||| || ||
Sbjct 1090532 TG-TCAATTCTATGTTAATTTCCCAGAAAACGCTAAACCTAAATTATCATGTTTATTGTA 1090474
Query 171996 TCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTGGATTTTATTCATTTTT 172055
||| ||||| |||| | || ||||| || |||| || |||| | ||| | || ||
Sbjct 1090473 TCAGAGATCTTGTGATATGGGTTTGGGAGTTCCTTTCAACATTGCTTCCTATGCTTTGTT 1090414
Query 172056 AA-TACTTGTGTTAAGTAAATGGTGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTG 172114
|| || || | |||| || | | || | |||||||||||| | |
Sbjct 1090413 AACTAAGATGATTGCTCATGTGGT-TGATATGGATTGTGGTGAATTTATTCATACTATGG 1090355
Query 172115 GAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAA 172154
| |||| ||||||||||| ||||||| || |||| ||
Sbjct 1090354 GTGATGCTCACGTGTATTTGGATCATGTGGATGCTTTGAA 1090315
>seq21
Length=244291
Score = 93.3 bits (102), Expect = 5e-14
Identities = 172/250 (69%), Gaps = 2/250 (1%)
Strand=Plus/Minus
Query 193347 ATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCAT 193406
||||| | || || | |||||| || | ||||| |||||| |||||||||||||
Sbjct 1925 ATTTTCTTTGGTCCTATTTATTATCAAAAATTGAAACATATGGTTTTGGATAAAATGCAT 1866
Query 193407 GCTAGAAGT-CATGGGCAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCA 193465
|| ||| | | | |||| | || |||| ||||||||| | ||| | ||
Sbjct 1865 GCAAGAGCTAGAGGTCCAAGAG-CTGTTTTAACAAGACAACCAACTGAAGGTAGATCAAG 1807
Query 193466 AGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTAC 193525
|| ||| ||||| ||||| || || ||||||| ||| ||| || | | | |||||||| |
Sbjct 1806 AGATGGTGGTTTGAGATTGGGTGAGATGGAAAGAGATTGTGTTATTGCCTATGGTGCTTC 1747
Query 193526 TCAATTCTTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCAC 193585
||| || ||| |||||| | | | | ||| ||| | ||| | || |||||||| |
Sbjct 1746 TCAGTTGTTATTGGAAAGATTAATGATTTCTTCCGATGCATTTGAGGTAGATGTTTGTAA 1687
Query 193586 AGAATGTGGT 193595
| ||||||
Sbjct 1686 CAAGTGTGGT 1677
>seq2
Length=1666313
Score = 93.3 bits (102), Expect = 5e-14
Identities = 125/168 (74%), Gaps = 7/168 (4%)
Strand=Plus/Plus
Query 50325 TGATGATGTACTATTA--AATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTT 50382
||||| ||| ||||| ||| | |||||||| | ||||||||||||||| || |
Sbjct 1078747 TGATGTTGT--TATTATGAATCGTCAACCAACTTTGCATAAAGCTTCTATGATGGGTCAT 1078804
Query 50383 AAAGTTAAAATTCAACCAG-TAAAAACA-TTTAAAATGAATTTA-GCTATGACTAAAGCA 50439
||||| | | || ||||| | |||| | ||||| || | ||| |||| ||| ||
Sbjct 1078805 AAAGTCAGAGTTTTACCAGGTGAAAAGACTTTAAGATTACATTATGCTAATACTGGTGCT 1078864
Query 50440 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 50487
|||||||| ||||||||||| |||||||||||| | ||| | || |||
Sbjct 1078865 TATAATGCCGATTTTGATGGTGATGAAATGAATATGCATTTCCCACAA 1078912
>seq16
Length=329187
Score = 82.4 bits (90), Expect = 1e-10
Identities = 139/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219
||||| ||||||||||| ||||||||| ||| | || | |||| | ||||||||
Sbjct 113426 ATTAAGGTTGCTCAATTGGCTGGGTATGTAAGTGAAAACACTGGTTATCATCATGGTGAG 113485
Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT- 165278
||| || | | || || ||| ||| || ||| | ||||||||| | ||||||||
Sbjct 113486 CAATCATTGGTTCAGACCATCATTGGGTTGGCACAAAACTTTGTTGGTTCTAATAATATC 113545
Query 165279 AGCATTACTT-GAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTG 165337
| ||| ||| |||| ||||| ||||||| ||| | || ||||||||||
Sbjct 113546 AACAT--CTTAAAACCAAATGGTTCCTTTGGTAGTAGAGCCGCTGGTGGTAAAGATTTCT 113603
Query 165338 CGGCATCAAGATATATTT 165355
| || | ||||||||||
Sbjct 113604 CCGCTGCGAGATATATTT 113621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628530021504000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |