Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 seq21 93.3 5e-14 seq2 93.3 5e-14 seq16 82.4 1e-10 >seq1 Length=2377843 Score = 154 bits (170), Expect = 2e-32 Identities = 423/640 (66%), Gaps = 26/640 (4%) Strand=Plus/Minus Query 171534 ACATTTAGAATTTGATTTAAGTAGTGGAACTATACCATTACTTACTACaaaaaaaaTTGT 171593 ||| ||| |||||||||| | || || | ||||| | ||||| || ||| || Sbjct 1090947 ACAATTAAGATTTGATTTATCAAATGATACATTTCCATTGTTAACTACCAAGAAA---GT 1090891 Query 171594 ATATACTAA---TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAA 171650 | | |||| |||| || | ||| | |||||| ||||| || ||||| ||| | || Sbjct 1090890 CTTTTCTAAAGGTATCATTCATGAATTATTATGGTTTATTGCTGGATCAACCGATGCTAA 1090831 Query 171651 ACAATTAAATGATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGA 171710 | |||| | | |||||||||| ||||| | | |||||| |||||||| |||||||| Sbjct 1090830 AATTTTAACCAACAAAGGTGTTAAAATTTGGGAAGGTAATGGATCTCGTGAGTTTTTAGA 1090771 Query 171711 TTTATGCGGGTTTACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATG 171770 | | || || ||| | | ||||||||||| || ||| ||||||| || ||||| Sbjct 1090770 TAAGTTAGGATTGACTCATCGTCGTGAAGGTGATTTGGGACCAGTTTATGGTTTCCAATG 1090711 Query 171771 GAGACATGCAGGGGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGA 171830 |||||| || ||| |||||| || ||| || | ||||| || |||||||| || Sbjct 1090710 GAGACACTTTGGTGCTGAATATAAAGATTGTGATGCTGATTATACTGGACAAGGTTATGA 1090651 Query 171831 CCAATT--AAGTCAAACTATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTA 171888 || || ||| | | ||||| | ||| | ||||||| | |||||| || | Sbjct 1090650 TCAGTTGCAAG--ATATCATTAAGAAATTAAAGTCCAACCCATATGATAGAAGAATAATC 1090593 Query 171889 ATTGATAGTTGGAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCA-CACTTT 171947 || | |||||| ||| | |||||||||||| | | ||||| || || |||| Sbjct 1090592 ATGAGTGCCTGGAATCCACCAGATTTTGATAAAATGGCTTTACCTCCATGTCATGTCTTT 1090533 Query 171948 AGCACAATTTTATGT--------CAGaaaa----aaaTCAATCTTAGATTGTCAGTTATA 171995 | ||||| ||||| ||||||| ||| | | ||| ||| || || Sbjct 1090532 TG-TCAATTCTATGTTAATTTCCCAGAAAACGCTAAACCTAAATTATCATGTTTATTGTA 1090474 Query 171996 TCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTGGATTTTATTCATTTTT 172055 ||| ||||| |||| | || ||||| || |||| || |||| | ||| | || || Sbjct 1090473 TCAGAGATCTTGTGATATGGGTTTGGGAGTTCCTTTCAACATTGCTTCCTATGCTTTGTT 1090414 Query 172056 AA-TACTTGTGTTAAGTAAATGGTGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTG 172114 || || || | |||| || | | || | |||||||||||| | | Sbjct 1090413 AACTAAGATGATTGCTCATGTGGT-TGATATGGATTGTGGTGAATTTATTCATACTATGG 1090355 Query 172115 GAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAA 172154 | |||| ||||||||||| ||||||| || |||| || Sbjct 1090354 GTGATGCTCACGTGTATTTGGATCATGTGGATGCTTTGAA 1090315 >seq21 Length=244291 Score = 93.3 bits (102), Expect = 5e-14 Identities = 172/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 193347 ATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCAT 193406 ||||| | || || | |||||| || | ||||| |||||| ||||||||||||| Sbjct 1925 ATTTTCTTTGGTCCTATTTATTATCAAAAATTGAAACATATGGTTTTGGATAAAATGCAT 1866 Query 193407 GCTAGAAGT-CATGGGCAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCA 193465 || ||| | | | |||| | || |||| ||||||||| | ||| | || Sbjct 1865 GCAAGAGCTAGAGGTCCAAGAG-CTGTTTTAACAAGACAACCAACTGAAGGTAGATCAAG 1807 Query 193466 AGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTAC 193525 || ||| ||||| ||||| || || ||||||| ||| ||| || | | | |||||||| | Sbjct 1806 AGATGGTGGTTTGAGATTGGGTGAGATGGAAAGAGATTGTGTTATTGCCTATGGTGCTTC 1747 Query 193526 TCAATTCTTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCAC 193585 ||| || ||| |||||| | | | | ||| ||| | ||| | || |||||||| | Sbjct 1746 TCAGTTGTTATTGGAAAGATTAATGATTTCTTCCGATGCATTTGAGGTAGATGTTTGTAA 1687 Query 193586 AGAATGTGGT 193595 | |||||| Sbjct 1686 CAAGTGTGGT 1677 >seq2 Length=1666313 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 50325 TGATGATGTACTATTA--AATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTT 50382 ||||| ||| ||||| ||| | |||||||| | ||||||||||||||| || | Sbjct 1078747 TGATGTTGT--TATTATGAATCGTCAACCAACTTTGCATAAAGCTTCTATGATGGGTCAT 1078804 Query 50383 AAAGTTAAAATTCAACCAG-TAAAAACA-TTTAAAATGAATTTA-GCTATGACTAAAGCA 50439 ||||| | | || ||||| | |||| | ||||| || | ||| |||| ||| || Sbjct 1078805 AAAGTCAGAGTTTTACCAGGTGAAAAGACTTTAAGATTACATTATGCTAATACTGGTGCT 1078864 Query 50440 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 50487 |||||||| ||||||||||| |||||||||||| | ||| | || ||| Sbjct 1078865 TATAATGCCGATTTTGATGGTGATGAAATGAATATGCATTTCCCACAA 1078912 >seq16 Length=329187 Score = 82.4 bits (90), Expect = 1e-10 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 ||||| ||||||||||| ||||||||| ||| | || | |||| | |||||||| Sbjct 113426 ATTAAGGTTGCTCAATTGGCTGGGTATGTAAGTGAAAACACTGGTTATCATCATGGTGAG 113485 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT- 165278 ||| || | | || || ||| ||| || ||| | ||||||||| | |||||||| Sbjct 113486 CAATCATTGGTTCAGACCATCATTGGGTTGGCACAAAACTTTGTTGGTTCTAATAATATC 113545 Query 165279 AGCATTACTT-GAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTG 165337 | ||| ||| |||| ||||| ||||||| ||| | || |||||||||| Sbjct 113546 AACAT--CTTAAAACCAAATGGTTCCTTTGGTAGTAGAGCCGCTGGTGGTAAAGATTTCT 113603 Query 165338 CGGCATCAAGATATATTT 165355 | || | |||||||||| Sbjct 113604 CCGCTGCGAGATATATTT 113621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628530021504000