Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq16 104 2e-17 seq5 100 3e-16 seq1 86.0 6e-12 >seq16 Length=329187 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||| || || || | |||||||| ||||| |||||||| || | Sbjct 297499 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAC 297440 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||||||||||||| |||||| | ||| ||||| || || Sbjct 297439 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGA 297380 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| ||| | | || | ||||| | || ||| ||| Sbjct 297379 ATACCTTCTTTGTCTTGGATTTTAGATTTGACATTGTCAATGGTGTCGGAGGATTCGACT 297320 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || || || || ||||| |||||||| Sbjct 297319 TCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 297273 >seq5 Length=745199 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||| || || || | |||||||||||||| |||||||| || | Sbjct 622550 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGAC 622609 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| | |||||||||||| | |||| | ||| ||||| || || Sbjct 622610 AAGGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 622669 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || ||||| ||| | | || | ||||| | | ||| ||| Sbjct 622670 ATACCTTCTTTATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTCGACT 622729 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || || || || || ||||| ||||| ||||||||| Sbjct 622730 TCTAAGGTAATAGTTTTACCAGTTAAAGTTTTAACGAAAATTTGCATA 622777 >seq1 Length=2377843 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 50502 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50561 ||||| || || | |||||||| | |||||| || ||| | || || | || ||||| Sbjct 1804154 GAAGCTGTTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGT 1804095 Query 50562 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50621 |||||| ||| ||||||| | || |||| | |||||| || ||||| || || Sbjct 1804094 ATGAACTGTGACTTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCC 1804035 Query 50622 CTGGG--ACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATAT 50679 |||| |||| |||| || |||| |||||| || || ||| | || || | Sbjct 1804034 TTGGGTAACAA--GAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTT 1803977 Query 50680 CGTTGGAGGGCAAAACAAACTTTTTCGAAA 50709 | |||| || ||||| ||||||||||||| Sbjct 1803976 CCTTGGCTGGTAAAACCAACTTTTTCGAAA 1803947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543083980000