Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq21 221 3e-52
seq1 197 3e-45
seq6 154 3e-32
seq2 111 4e-19
seq14 95.1 3e-14
seq22 93.3 1e-13
seq16 89.7 1e-12
>seq21
Length=244291
Score = 221 bits (244), Expect = 3e-52
Identities = 445/653 (68%), Gaps = 14/653 (2%)
Strand=Plus/Minus
Query 110514 TTGGCTTCTTGCTTTCTTC-TAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGC 110572
||| |||| || |||||| ||| || || |||||||| || || || || ||| | |
Sbjct 8690 TTGTCTTCCTG-TTTCTTGATAGCTATGAAAGATGATTCAATAGATGGAATCTATAAAAC 8632
Query 110573 TCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGA 110632
||| | ||| | || | ||||| ||| || || ||||||||||| || || |||||
Sbjct 8631 CCTTCACGAATCAGCATTAATTTCCAAAGCATCAGGGGGAATTGGTATCCATGTACATGA 8572
Query 110633 TATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCC 110692
|||| || || || || |||| || | || || | ||| |||| | |||||
Sbjct 8571 AGTTCGTTCCAATGGTTCATATATTGCTGGTACCAATGGGATTGCAAATGGATTAGTTCC 8512
Query 110693 AATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAA 110749
||||||| | || || ||| |||||||| |||||| | || |||||| || |
Sbjct 8511 AATGTTACGTGTTTTTAACAACACTGCACGATATGTCGACCAGGGTGGTGGTAAACGTCC 8452
Query 110750 TGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACT 110809
||| | ||||| || ||| | |||||||||||| ||||| ||||| | ||||| |
Sbjct 8451 TGGTGCTTTTGCGATTTATATTGAACCTTGGCATGGCGATATTTTTGACATTTTAGAGAT 8392
Query 110810 TCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGAT 110869
| |||||||| ||| ||||||| |||| | | |||||||| |||| | | |||||
Sbjct 8391 GAGAAAAAATCATGGAAGTGAAGAATTAAGAACTAGAGATTTATTCTATGGATTATGGAT 8332
Query 110870 TTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTC 110928
| | |||||||||||| || | || ||| ||| | || ||| | | |||| ||
Sbjct 8331 TCCTGATTTATTCATGCAAAGGGTAAAAGCTGATGAGTAT-TGGACATTGATGTCACCGA 8273
Query 110929 ATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAAT 110988
| | ||||| | ||||||||| || | || ||| |||| | || || || |
Sbjct 8272 GTGAAGCCCCTGGATTGAGTGATGTATACGGTGATGATTTTAAAGAGTTGTATGAGAAGT 8213
Query 110989 ATGAAAAAGAAGGCAAGTTTCGCAAAC--AAATTCCAGCTCAAGAACTTTGGTTCAAAAT 111046
|||| || ||||| || | ||| |||| | |||||| |||| ||| | |||
Sbjct 8212 ATGAGAA-----GCAAGGTTTGGGAACTAAAATACGAGCTCATAAACTATGGCTAGCAAT 8158
Query 111047 CCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCG 111106
| ||||||||| |||||| || || ||||| | ||||||||| ||||
Sbjct 8157 TTTAGAATCACAAACTGAAACCGGTGGCCCATATATGCTTTATAAAGATGCCTGTAATGA 8098
Query 111107 CAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159
||||| ||||| | || | || ||||| ||||| |||||||||||||
Sbjct 8097 AAAATCAAATCAGAAAAACCTTGGTACAATCAAGTCGTCAAATTTGTGCTGTG 8045
>seq1
Length=2377843
Score = 197 bits (218), Expect = 3e-45
Identities = 392/577 (68%), Gaps = 5/577 (1%)
Strand=Plus/Minus
Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494
|||||||||||| |||| || | | || | ||||| ||| | | || ||||||||
Sbjct 1804793 TTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTCCTTCTGG 1804734
Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAA---ATTAACCTTG 131551
||| |||||| | ||| | | |||||| | ||||||||| | || |||||
Sbjct 1804733 ACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATTAAATGAC 1804674
Query 131552 AATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTT 131611
||||||| | |||||||||| | |||| | || || ||||| | |||||| ||||||
Sbjct 1804673 AATGAAAGATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTGTT 1804614
Query 131612 ATTGAAAATCTTG-TTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGTT 131670
|||||| |||| || || || | ||| | | | || |||| | ||| ||
Sbjct 1804613 GGTGAAAA-CTTGATTGAAAACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTAAATCATT 1804555
Query 131671 CTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGA 131730
||| || ||| | | ||| |||||| || |||||||| ||||| |||||
Sbjct 1804554 CTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTATTAATTGA 1804495
Query 131731 GAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTCC 131790
| | ||||||| | | | || || || ||| |||| | | || ||||
Sbjct 1804494 AACTTATGTTAAAGACCCACAAGAAGCTGATTTCTTGTTTAATGCCATTGAAAACATTCC 1804435
Query 131791 TGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTT 131850
|||| |||||||| |||||||| || ||||||||||||||| | ||| |
Sbjct 1804434 ATGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGATGCTTTATA 1804375
Query 131851 TTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTG 131910
| || |||| | || ||||||||| | |||||||||| ||||| ||| | ||
Sbjct 1804374 TGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCATTTGC 1804315
Query 131911 TGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATT 131970
| ||||||| ||| | || ||| | || |||||||| || | | || |||||| ||||
Sbjct 1804314 TTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATGAATT 1804255
Query 131971 CATCTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007
|||| |||||||||| || |||||||| ||||||
Sbjct 1804254 GATCTGTAGAGATGAAGGTTTACATACTGATTTTGCT 1804218
Score = 190 bits (210), Expect = 5e-43
Identities = 569/866 (66%), Gaps = 13/866 (2%)
Strand=Plus/Minus
Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361
|||| |||||||||||||| | ||| | | ||||| | ||| |||| || | |
Sbjct 1849176 ACTACTTTGGTTTCAAAACCATGGAAAGATCATATTTGTTACGTATCAACGGTAAAGTTG 1849117
Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421
|||| | || ||||| | || | | ||||| ||||||||||| || | ||||||
Sbjct 1849116 CTGAAAGACCACAACATTTAATTATGAGAGTTGCTATTGGTATTCACGGTAAAGATATTC 1849057
Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAA-AAAGAAAGCT-ATTCATGCTACTCC 110479
| ||||||||| |||| || | | || | ||||| | | | || | | | ||
Sbjct 1849056 CAAGAGTTATTGAAACTTATAATTTGAT--GTCACAAAGATATTTCACACACGGTTCCCC 1848999
Query 110480 TACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAA 110538
| || || || || || || |||| || |||| || |||||| || | |
Sbjct 1848998 ATGTTTGTTCAATGCCGGTACCCCAAGACCACAAATGTCTTCATG-TTTCTTGCTTGCTA 1848940
Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598
| || |||||||| |||||||||||||| ||| || | ||| | |||| | ||||| |
Sbjct 1848939 TGAAGGATGATTCCATTGAAGGTATTTACGATACTTTGAAATCATGTGCTTTAATTTCCA 1848880
Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658
| | |||| || |||||| | ||| | || | ||||| || | || || | || |
Sbjct 1848879 AGAGTGCTGGTGGTATTGGTTTGCACATCCACAACATTCGTTCCACTGGTGCTTACATTG 1848820
Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718
| | || ||| |||| | || || |||| ||| | ||||| |||||| ||||||
Sbjct 1848819 CTGGTACTAATGGTACTTCCAACGGTATTATTCCTATGGTCAGAGTTTTCAACAACACTG 1848760
Query 110719 CAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775
| ||||| ||||||||||| |||||| || | |||||| | || | ||||
Sbjct 1848759 CTCGTTATGTTGATCAAGGTGGTAACAAGAGACCAGGTGCTTTTGCTTTATACTTGGAAC 1848700
Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835
| ||||| ||||| ||||| || | || || | || || || || ||||||
Sbjct 1848699 CATGGCACAGTGATATCTTTGACTTTATCGATATTAGAAAGAACCACGGTAAAGAAGAAA 1848640
Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895
||||| | || || || || ||||||| ||||||| |||||||| | |||
Sbjct 1848639 TCAGAGCCAGAGACTTGTTCCCAGCTTTGTGGATCCCAGATTTGTTCATGAAGAGAGTTG 1848580
Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955
|| |||| || ||| || | | | ||| || |||| ||| | || ||||| |
Sbjct 1848579 AACAAAACGGTGACTGGACTTTGTTCTCTCCAAATGAAGCTCCAGGTTTGTCAGATGTCT 1848520
Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGA-AGGCAAGTTTCGCAAA 111014
| || | || |||||||| | || | ||| ||||| || | | | | ||||
Sbjct 1848519 ACGGTGATGAATTTGAAGAATTATATACCAGATACGAAAAGGAGAACCGTGGTAGACAAA 1848460
Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGAAC 111073
| || ||| ||| || | |||| | || ||||| | | ||| |||||||| ||
Sbjct 1848459 C-CATCAAAGCCCAAAAATTATGGTACGCTAT-CTTGAGTGCCCAAACCGAAACTGGTAC 1848402
Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133
||| | ||| |||||||||||| | ||| ||| |||| |||| |||||| ||
Sbjct 1848401 TCCATTTATGTTGTATAAAGATGCTTGTAACACCAAGACTAACCAAAAGAATTTGGGTGT 1848342
Query 111134 AATTAAGTCTAGTAATTTGTGCTGTG 111159
|| || ||| || ||||| ||||
Sbjct 1848341 CATCAAATCTTCCAACTTGTGTTGTG 1848316
>seq6
Length=647514
Score = 154 bits (170), Expect = 3e-32
Identities = 484/740 (65%), Gaps = 42/740 (6%)
Strand=Plus/Plus
Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261
|||| ||||||||| || ||||||| | | ||| || |||| ||||||
Sbjct 614049 AATAATTCAAAAGAACATAATAAATCTTCCAGTACTCCCATAACTGCACCCCAATTATCA 614108
Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGAT---TGAAAAA 167317
||||| | | || ||||| |||||||||||||| ||||||||| | | || |||||||
Sbjct 614109 AATTC-TCCACAATAATTAGGTGCTGAAAATACTGTAACTAATGTTCTATCATTGAAAAA 614167
Query 167318 TAATTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAAGTTCAACTCCTAtttt 167377
| ||||| |||||||||||||| ||| || || || | |||| | |||
Sbjct 614168 T---TCATATCCATCTTCAACAACCATATGAGCTCGACAAACTAAATCAAAATTAAATTT 614224
Query 167378 tttAAGAAAATTAGTTAAAGCACGTAATCCAAATTTATAACTACAACCTCTTTC---AGA 167434
| ||||| ||| | | ||| | ||| |||| | |||||||| |
Sbjct 614225 ACTTAGAAATTTATTAATGGCAACTTTGGAGAATACATAAGAAACTCCTCTTTCGTTATC 614284
Query 167435 TTCAGAATAATAATCAATATCATGCGATGGATCCGCCCAAAGAAGATCGCATACCAACCC 167494
||| | | || |||| ||| |||||| | ||| | | ||| | || ||
Sbjct 614285 TTCCCATTCATTTATTGTATC-TGC--TGGATCTGACCATAACAAATCATTCAATAATCC 614341
Query 167495 CTTATCAGGGATATCAATAGGTTT---TTTAATCCTATTGATATCTTCTAATTTATT-AA 167550
|||||| | ||| ||||| | | || | ||| || || || | | ||| ||
Sbjct 614342 AAAATCAGGCACATCTGTAGGTCTAGCTATATTTCTA---ATTTCATCCATTGAATTCAA 614398
Query 167551 TATCTTCAGTGATTCCACCATGAACACAAAAAGCCAATGGATTATCAATTGTTATTCCAA 167610
|| || || | ||||||||||||||| ||| || ||| || |||
Sbjct 614399 TA-CTGGAGATAATCCACCATGAACACAGAAA----ATT--TTACCAG---------CAA 614442
Query 167611 TGGTTGCAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCG 167670
| |||||||| | || ||| | |||| ||| || || |||||| |||| ||
Sbjct 614443 CAATAGCAGCAATTGGCAAAGTATTAAAAGTATCAATAAATAATTTCCAAGTTTTAATAT 614502
Query 167671 AACCACGTCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGT 167730
|| | |||||| |||||||| ||||| ||||| |||| | | || |||||||| |
Sbjct 614503 TACATCTTCGTTTACATTCATCATAAAATCCATAAACTCTCGTAACATTTGCACATTCAT 614562
Query 167731 GATTTCCTCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACA 167790
|||| ||||||||||| | | || | | || || || ||||| |
Sbjct 614563 GATTACCTCTTAATAAGAAAAAATTCTCCGGATATTTGATTTTATAACACAACAATAATA 614622
Query 167791 AAATTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTAT 167850
|||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||
Sbjct 614623 AAATTGTTTCTAATGATTGTTTACCTCTATCAACATAATCTCCTAAAAATAAATA---AT 614679
Query 167851 TTTGGTTTGAAGGATTATCTAGTTTTTTA-AAAATATTCAATAAATCACTAAATTGACCA 167909
|| |||| |||| | | | ||| | |||||| | |||||| | ||||||||
Sbjct 614680 TTGTCTTTGGAGGA-AACCCACATTTGGAGAAAATACGAATTAAATCCAAATATTGACCA 614738
Query 167910 TGTAAATCACCTACAACCTT 167929
|| | |||||| ||||| ||
Sbjct 614739 TGAACATCACCAACAACTTT 614758
>seq2
Length=1666313
Score = 111 bits (122), Expect = 4e-19
Identities = 139/187 (74%), Gaps = 9/187 (5%)
Strand=Plus/Plus
Query 305305 CAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAAT 305364
||||||| | || |||||||| ||| | | ||| | |||||| | ||||||||
Sbjct 1078729 CAGACATATTAAAAACAATGATGTTGTTATTATGAATCGTCAACCAACTTTGCATAAAGC 1078788
Query 305365 GTCTATGATGGCTCATAAAGTCAAAGTATTATCTGG---ATTGACATTTCGATTAAATGT 305421
|||||||||| ||||||||||| ||| ||| | || | ||| || ||||| || |
Sbjct 1078789 TTCTATGATGGGTCATAAAGTCAGAGTTTTACCAGGTGAAAAGACTTTAAGATTACAT-T 1078847
Query 305422 AAGTGCTTGTACGC---CTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGT 305478
| |||| ||| |||||||||| ||||||||||| |||||||||||||||||| |
Sbjct 1078848 A--TGCTAATACTGGTGCTTATAATGCCGATTTTGATGGTGATGAAATGAATATGCATTT 1078905
Query 305479 ACCTCAA 305485
|| |||
Sbjct 1078906 CCCACAA 1078912
>seq14
Length=405284
Score = 95.1 bits (104), Expect = 3e-14
Identities = 118/158 (75%), Gaps = 4/158 (3%)
Strand=Plus/Minus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
||| |||||||||| || || || |||||| | |||| || || | ||| | | ||||
Sbjct 10392 GTTTTGTTCAATAGACAGCCTTCGTTGCATAGATTGTCGATCTTGTCCCATTATGCCAAA 10333
Query 305390 GTATTATC--TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447
|| | || |||| || || || || || | | ||| |||||| || |||||||| |
Sbjct 10332 GT-TCGTCCTTGGAGA-ACCTTCCGTTTGAACGAATGTGTTTGTACTCCATATAATGCCG 10275
Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
|||||||||| ||||||||||| ||||||| || |||
Sbjct 10274 ATTTTGATGGTGATGAAATGAACTTGCATGTTCCACAA 10237
>seq22
Length=238992
Score = 93.3 bits (102), Expect = 1e-13
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 167248 CACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307
|||||||||| || |||||| ||| |||||||| || |||| || || |||| ||
Sbjct 148066 CACCAGCATTGTCAAATTCACCACAATAGTTTGGTGCAGAGAATAATGTCACCAATTGAC 148125
Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353
| ||| || ||||| ||||||||||||||||||| |||||||||
Sbjct 148126 GCTTGCTGAAAAATTCGTAACCATCTTCAACAACTTGATGGGCACG 148171
>seq16
Length=329187
Score = 89.7 bits (98), Expect = 1e-12
Identities = 144/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 278138 GTTAAAAATGACGGGCCTGGTATTGATATTGCAATGCATCCTAAGGAAAACAAGTACACA 278197
|||| ||||| || |||||| ||| ||||||| | || ||||||| ||| |
Sbjct 111530 GTTATGAATGATGGTAAAGGTATTCCAGTTGAAATGCATACCAAAGAAAACATGTATATT 111589
Query 278198 GTTGAAATGATATTTGGGAATTTATTGACATCTACTAATTACAAGGAAGATGAAGAGCGA 278257
|||| |||| ||||| || || ||||||||| | ||||| | || || || || |
Sbjct 111590 CCTGAATTGATTTTTGGTAACTTGTTGACATCTTCAAATTATGATGATAATCAAAAGAAA 111649
Query 278258 CTCACAGGAGGCAAAAATGGATATGGGGCAAAGCTGACAAATATCTTCTCAAAATGCTTT 278317
|||| || || | |||||| | ||| || ||| || || || ||||| | |||
Sbjct 111650 GTCACTGGTGGTAGAAATGGGTTTGGTGCCAAGTTGTGTAACATTTTCTCTACTCAATTT 111709
Query 278318 GAAGTTGAAACTGTTGATAAAAAGACT 278344
||||||||||| | |||| ||| |||
Sbjct 111710 GAAGTTGAAACAGCTGATTTAAATACT 111736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186810519094150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |