Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq21 221 3e-52 seq1 197 3e-45 seq6 154 3e-32 seq2 111 4e-19 seq14 95.1 3e-14 seq22 93.3 1e-13 seq16 89.7 1e-12 >seq21 Length=244291 Score = 221 bits (244), Expect = 3e-52 Identities = 445/653 (68%), Gaps = 14/653 (2%) Strand=Plus/Minus Query 110514 TTGGCTTCTTGCTTTCTTC-TAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGC 110572 ||| |||| || |||||| ||| || || |||||||| || || || || ||| | | Sbjct 8690 TTGTCTTCCTG-TTTCTTGATAGCTATGAAAGATGATTCAATAGATGGAATCTATAAAAC 8632 Query 110573 TCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGA 110632 ||| | ||| | || | ||||| ||| || || ||||||||||| || || ||||| Sbjct 8631 CCTTCACGAATCAGCATTAATTTCCAAAGCATCAGGGGGAATTGGTATCCATGTACATGA 8572 Query 110633 TATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCC 110692 |||| || || || || |||| || | || || | ||| |||| | ||||| Sbjct 8571 AGTTCGTTCCAATGGTTCATATATTGCTGGTACCAATGGGATTGCAAATGGATTAGTTCC 8512 Query 110693 AATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAA 110749 ||||||| | || || ||| |||||||| |||||| | || |||||| || | Sbjct 8511 AATGTTACGTGTTTTTAACAACACTGCACGATATGTCGACCAGGGTGGTGGTAAACGTCC 8452 Query 110750 TGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACT 110809 ||| | ||||| || ||| | |||||||||||| ||||| ||||| | ||||| | Sbjct 8451 TGGTGCTTTTGCGATTTATATTGAACCTTGGCATGGCGATATTTTTGACATTTTAGAGAT 8392 Query 110810 TCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGAT 110869 | |||||||| ||| ||||||| |||| | | |||||||| |||| | | ||||| Sbjct 8391 GAGAAAAAATCATGGAAGTGAAGAATTAAGAACTAGAGATTTATTCTATGGATTATGGAT 8332 Query 110870 TTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTC 110928 | | |||||||||||| || | || ||| ||| | || ||| | | |||| || Sbjct 8331 TCCTGATTTATTCATGCAAAGGGTAAAAGCTGATGAGTAT-TGGACATTGATGTCACCGA 8273 Query 110929 ATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAAT 110988 | | ||||| | ||||||||| || | || ||| |||| | || || || | Sbjct 8272 GTGAAGCCCCTGGATTGAGTGATGTATACGGTGATGATTTTAAAGAGTTGTATGAGAAGT 8213 Query 110989 ATGAAAAAGAAGGCAAGTTTCGCAAAC--AAATTCCAGCTCAAGAACTTTGGTTCAAAAT 111046 |||| || ||||| || | ||| |||| | |||||| |||| ||| | ||| Sbjct 8212 ATGAGAA-----GCAAGGTTTGGGAACTAAAATACGAGCTCATAAACTATGGCTAGCAAT 8158 Query 111047 CCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCG 111106 | ||||||||| |||||| || || ||||| | ||||||||| |||| Sbjct 8157 TTTAGAATCACAAACTGAAACCGGTGGCCCATATATGCTTTATAAAGATGCCTGTAATGA 8098 Query 111107 CAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 ||||| ||||| | || | || ||||| ||||| ||||||||||||| Sbjct 8097 AAAATCAAATCAGAAAAACCTTGGTACAATCAAGTCGTCAAATTTGTGCTGTG 8045 >seq1 Length=2377843 Score = 197 bits (218), Expect = 3e-45 Identities = 392/577 (68%), Gaps = 5/577 (1%) Strand=Plus/Minus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494 |||||||||||| |||| || | | || | ||||| ||| | | || |||||||| Sbjct 1804793 TTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTCCTTCTGG 1804734 Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAA---ATTAACCTTG 131551 ||| |||||| | ||| | | |||||| | ||||||||| | || ||||| Sbjct 1804733 ACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATTAAATGAC 1804674 Query 131552 AATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTT 131611 ||||||| | |||||||||| | |||| | || || ||||| | |||||| |||||| Sbjct 1804673 AATGAAAGATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTGTT 1804614 Query 131612 ATTGAAAATCTTG-TTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGTT 131670 |||||| |||| || || || | ||| | | | || |||| | ||| || Sbjct 1804613 GGTGAAAA-CTTGATTGAAAACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTAAATCATT 1804555 Query 131671 CTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGA 131730 ||| || ||| | | ||| |||||| || |||||||| ||||| ||||| Sbjct 1804554 CTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTATTAATTGA 1804495 Query 131731 GAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTCC 131790 | | ||||||| | | | || || || ||| |||| | | || |||| Sbjct 1804494 AACTTATGTTAAAGACCCACAAGAAGCTGATTTCTTGTTTAATGCCATTGAAAACATTCC 1804435 Query 131791 TGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTT 131850 |||| |||||||| |||||||| || ||||||||||||||| | ||| | Sbjct 1804434 ATGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGATGCTTTATA 1804375 Query 131851 TTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTG 131910 | || |||| | || ||||||||| | |||||||||| ||||| ||| | || Sbjct 1804374 TGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCATTTGC 1804315 Query 131911 TGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATT 131970 | ||||||| ||| | || ||| | || |||||||| || | | || |||||| |||| Sbjct 1804314 TTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATGAATT 1804255 Query 131971 CATCTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007 |||| |||||||||| || |||||||| |||||| Sbjct 1804254 GATCTGTAGAGATGAAGGTTTACATACTGATTTTGCT 1804218 Score = 190 bits (210), Expect = 5e-43 Identities = 569/866 (66%), Gaps = 13/866 (2%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| |||||||||||||| | ||| | | ||||| | ||| |||| || | | Sbjct 1849176 ACTACTTTGGTTTCAAAACCATGGAAAGATCATATTTGTTACGTATCAACGGTAAAGTTG 1849117 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||| | || ||||| | || | | ||||| ||||||||||| || | |||||| Sbjct 1849116 CTGAAAGACCACAACATTTAATTATGAGAGTTGCTATTGGTATTCACGGTAAAGATATTC 1849057 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAA-AAAGAAAGCT-ATTCATGCTACTCC 110479 | ||||||||| |||| || | | || | ||||| | | | || | | | || Sbjct 1849056 CAAGAGTTATTGAAACTTATAATTTGAT--GTCACAAAGATATTTCACACACGGTTCCCC 1848999 Query 110480 TACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAA 110538 | || || || || || || |||| || |||| || |||||| || | | Sbjct 1848998 ATGTTTGTTCAATGCCGGTACCCCAAGACCACAAATGTCTTCATG-TTTCTTGCTTGCTA 1848940 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598 | || |||||||| |||||||||||||| ||| || | ||| | |||| | ||||| | Sbjct 1848939 TGAAGGATGATTCCATTGAAGGTATTTACGATACTTTGAAATCATGTGCTTTAATTTCCA 1848880 Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658 | | |||| || |||||| | ||| | || | ||||| || | || || | || | Sbjct 1848879 AGAGTGCTGGTGGTATTGGTTTGCACATCCACAACATTCGTTCCACTGGTGCTTACATTG 1848820 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 | | || ||| |||| | || || |||| ||| | ||||| |||||| |||||| Sbjct 1848819 CTGGTACTAATGGTACTTCCAACGGTATTATTCCTATGGTCAGAGTTTTCAACAACACTG 1848760 Query 110719 CAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| ||||||||||| |||||| || | |||||| | || | |||| Sbjct 1848759 CTCGTTATGTTGATCAAGGTGGTAACAAGAGACCAGGTGCTTTTGCTTTATACTTGGAAC 1848700 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 | ||||| ||||| ||||| || | || || | || || || || |||||| Sbjct 1848699 CATGGCACAGTGATATCTTTGACTTTATCGATATTAGAAAGAACCACGGTAAAGAAGAAA 1848640 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 ||||| | || || || || ||||||| ||||||| |||||||| | ||| Sbjct 1848639 TCAGAGCCAGAGACTTGTTCCCAGCTTTGTGGATCCCAGATTTGTTCATGAAGAGAGTTG 1848580 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 || |||| || ||| || | | | ||| || |||| ||| | || ||||| | Sbjct 1848579 AACAAAACGGTGACTGGACTTTGTTCTCTCCAAATGAAGCTCCAGGTTTGTCAGATGTCT 1848520 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGA-AGGCAAGTTTCGCAAA 111014 | || | || |||||||| | || | ||| ||||| || | | | | |||| Sbjct 1848519 ACGGTGATGAATTTGAAGAATTATATACCAGATACGAAAAGGAGAACCGTGGTAGACAAA 1848460 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGAAC 111073 | || ||| ||| || | |||| | || ||||| | | ||| |||||||| || Sbjct 1848459 C-CATCAAAGCCCAAAAATTATGGTACGCTAT-CTTGAGTGCCCAAACCGAAACTGGTAC 1848402 Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133 ||| | ||| |||||||||||| | ||| ||| |||| |||| |||||| || Sbjct 1848401 TCCATTTATGTTGTATAAAGATGCTTGTAACACCAAGACTAACCAAAAGAATTTGGGTGT 1848342 Query 111134 AATTAAGTCTAGTAATTTGTGCTGTG 111159 || || ||| || ||||| |||| Sbjct 1848341 CATCAAATCTTCCAACTTGTGTTGTG 1848316 >seq6 Length=647514 Score = 154 bits (170), Expect = 3e-32 Identities = 484/740 (65%), Gaps = 42/740 (6%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 |||| ||||||||| || ||||||| | | ||| || |||| |||||| Sbjct 614049 AATAATTCAAAAGAACATAATAAATCTTCCAGTACTCCCATAACTGCACCCCAATTATCA 614108 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGAT---TGAAAAA 167317 ||||| | | || ||||| |||||||||||||| ||||||||| | | || ||||||| Sbjct 614109 AATTC-TCCACAATAATTAGGTGCTGAAAATACTGTAACTAATGTTCTATCATTGAAAAA 614167 Query 167318 TAATTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAAGTTCAACTCCTAtttt 167377 | ||||| |||||||||||||| ||| || || || | |||| | ||| Sbjct 614168 T---TCATATCCATCTTCAACAACCATATGAGCTCGACAAACTAAATCAAAATTAAATTT 614224 Query 167378 tttAAGAAAATTAGTTAAAGCACGTAATCCAAATTTATAACTACAACCTCTTTC---AGA 167434 | ||||| ||| | | ||| | ||| |||| | |||||||| | Sbjct 614225 ACTTAGAAATTTATTAATGGCAACTTTGGAGAATACATAAGAAACTCCTCTTTCGTTATC 614284 Query 167435 TTCAGAATAATAATCAATATCATGCGATGGATCCGCCCAAAGAAGATCGCATACCAACCC 167494 ||| | | || |||| ||| |||||| | ||| | | ||| | || || Sbjct 614285 TTCCCATTCATTTATTGTATC-TGC--TGGATCTGACCATAACAAATCATTCAATAATCC 614341 Query 167495 CTTATCAGGGATATCAATAGGTTT---TTTAATCCTATTGATATCTTCTAATTTATT-AA 167550 |||||| | ||| ||||| | | || | ||| || || || | | ||| || Sbjct 614342 AAAATCAGGCACATCTGTAGGTCTAGCTATATTTCTA---ATTTCATCCATTGAATTCAA 614398 Query 167551 TATCTTCAGTGATTCCACCATGAACACAAAAAGCCAATGGATTATCAATTGTTATTCCAA 167610 || || || | ||||||||||||||| ||| || ||| || ||| Sbjct 614399 TA-CTGGAGATAATCCACCATGAACACAGAAA----ATT--TTACCAG---------CAA 614442 Query 167611 TGGTTGCAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCG 167670 | |||||||| | || ||| | |||| ||| || || |||||| |||| || Sbjct 614443 CAATAGCAGCAATTGGCAAAGTATTAAAAGTATCAATAAATAATTTCCAAGTTTTAATAT 614502 Query 167671 AACCACGTCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGT 167730 || | |||||| |||||||| ||||| ||||| |||| | | || |||||||| | Sbjct 614503 TACATCTTCGTTTACATTCATCATAAAATCCATAAACTCTCGTAACATTTGCACATTCAT 614562 Query 167731 GATTTCCTCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACA 167790 |||| ||||||||||| | | || | | || || || ||||| | Sbjct 614563 GATTACCTCTTAATAAGAAAAAATTCTCCGGATATTTGATTTTATAACACAACAATAATA 614622 Query 167791 AAATTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTAT 167850 |||||||||||||||||| |||||||||||||||||| |||||||||| ||| || Sbjct 614623 AAATTGTTTCTAATGATTGTTTACCTCTATCAACATAATCTCCTAAAAATAAATA---AT 614679 Query 167851 TTTGGTTTGAAGGATTATCTAGTTTTTTA-AAAATATTCAATAAATCACTAAATTGACCA 167909 || |||| |||| | | | ||| | |||||| | |||||| | |||||||| Sbjct 614680 TTGTCTTTGGAGGA-AACCCACATTTGGAGAAAATACGAATTAAATCCAAATATTGACCA 614738 Query 167910 TGTAAATCACCTACAACCTT 167929 || | |||||| ||||| || Sbjct 614739 TGAACATCACCAACAACTTT 614758 >seq2 Length=1666313 Score = 111 bits (122), Expect = 4e-19 Identities = 139/187 (74%), Gaps = 9/187 (5%) Strand=Plus/Plus Query 305305 CAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAAT 305364 ||||||| | || |||||||| ||| | | ||| | |||||| | |||||||| Sbjct 1078729 CAGACATATTAAAAACAATGATGTTGTTATTATGAATCGTCAACCAACTTTGCATAAAGC 1078788 Query 305365 GTCTATGATGGCTCATAAAGTCAAAGTATTATCTGG---ATTGACATTTCGATTAAATGT 305421 |||||||||| ||||||||||| ||| ||| | || | ||| || ||||| || | Sbjct 1078789 TTCTATGATGGGTCATAAAGTCAGAGTTTTACCAGGTGAAAAGACTTTAAGATTACAT-T 1078847 Query 305422 AAGTGCTTGTACGC---CTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGT 305478 | |||| ||| |||||||||| ||||||||||| |||||||||||||||||| | Sbjct 1078848 A--TGCTAATACTGGTGCTTATAATGCCGATTTTGATGGTGATGAAATGAATATGCATTT 1078905 Query 305479 ACCTCAA 305485 || ||| Sbjct 1078906 CCCACAA 1078912 >seq14 Length=405284 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| |||||||||| || || || |||||| | |||| || || | ||| | | |||| Sbjct 10392 GTTTTGTTCAATAGACAGCCTTCGTTGCATAGATTGTCGATCTTGTCCCATTATGCCAAA 10333 Query 305390 GTATTATC--TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 || | || |||| || || || || || | | ||| |||||| || |||||||| | Sbjct 10332 GT-TCGTCCTTGGAGA-ACCTTCCGTTTGAACGAATGTGTTTGTACTCCATATAATGCCG 10275 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||||| ||||||||||| ||||||| || ||| Sbjct 10274 ATTTTGATGGTGATGAAATGAACTTGCATGTTCCACAA 10237 >seq22 Length=238992 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 167248 CACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307 |||||||||| || |||||| ||| |||||||| || |||| || || |||| || Sbjct 148066 CACCAGCATTGTCAAATTCACCACAATAGTTTGGTGCAGAGAATAATGTCACCAATTGAC 148125 Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 | ||| || ||||| ||||||||||||||||||| ||||||||| Sbjct 148126 GCTTGCTGAAAAATTCGTAACCATCTTCAACAACTTGATGGGCACG 148171 >seq16 Length=329187 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 278138 GTTAAAAATGACGGGCCTGGTATTGATATTGCAATGCATCCTAAGGAAAACAAGTACACA 278197 |||| ||||| || |||||| ||| ||||||| | || ||||||| ||| | Sbjct 111530 GTTATGAATGATGGTAAAGGTATTCCAGTTGAAATGCATACCAAAGAAAACATGTATATT 111589 Query 278198 GTTGAAATGATATTTGGGAATTTATTGACATCTACTAATTACAAGGAAGATGAAGAGCGA 278257 |||| |||| ||||| || || ||||||||| | ||||| | || || || || | Sbjct 111590 CCTGAATTGATTTTTGGTAACTTGTTGACATCTTCAAATTATGATGATAATCAAAAGAAA 111649 Query 278258 CTCACAGGAGGCAAAAATGGATATGGGGCAAAGCTGACAAATATCTTCTCAAAATGCTTT 278317 |||| || || | |||||| | ||| || ||| || || || ||||| | ||| Sbjct 111650 GTCACTGGTGGTAGAAATGGGTTTGGTGCCAAGTTGTGTAACATTTTCTCTACTCAATTT 111709 Query 278318 GAAGTTGAAACTGTTGATAAAAAGACT 278344 ||||||||||| | |||| ||| ||| Sbjct 111710 GAAGTTGAAACAGCTGATTTAAATACT 111736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810519094150