Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 255 5e-63 seq2 178 1e-39 >seq1 Length=2377843 Score = 255 bits (282), Expect = 5e-63 Identities = 583/866 (67%), Gaps = 35/866 (4%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||||||| |||||||||| || ||| | | || |||||||| | || || || | Sbjct 1804795 TGTTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTCCTTCT 1804736 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC--ATTAAAACC 43824 |||| |||||||||||||| | |||||| || | |||||| | | ||| Sbjct 1804735 GGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATTAAATG 1804676 Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 |||| |||| | ||||| | ||| ||||| || ||||| ||||| || || || | Sbjct 1804675 ACAATGAAAGATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTG 1804616 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | |||||| ||| || ||| | ||||| ||| | |||||||| || | Sbjct 1804615 TTGGTGAAAACTTGATTGAAAACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTAAATCAT 1804556 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 | ||||| || ||||| || ||||| |||||||| |||||||| | | | || | Sbjct 1804555 TCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTATTAATTG 1804496 Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAATGCGATAGAAA-CAG 44060 | || || | ||||| ||| |||||| || ||||||||||| || |||| || Sbjct 1804495 AAACTTATGTTAAAGACC--CACAAGAAGCTGATTTCTTGTTTAATGCCATTGAAAACAT 1804438 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120 | | || |||| | ||||| || |||||| | |||||||| | || ||| ||| Sbjct 1804437 TCCATGT-ATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGATGCTT 1804379 Query 44121 T---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 | || ||| || | || || ||||| | | | ||||| |||||||| || || | Sbjct 1804378 TATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCAT 1804319 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 |||| | || || ||||| || || ||||||||||||| || ||||| || || |||| Sbjct 1804318 TTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATG 1804259 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT--------ACT 44289 | || || || | |||||||| |||||| ||||||||||| ||||| ||| Sbjct 1804258 AATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCACT 1804199 Query 44290 TGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGC 44349 || | | |||| || || || | | || | | ||| |||| || || Sbjct 1804198 TGCAACAC----AGACCAT----CTCCA---GAAATTGTTGAAAAGATTATTGTTGAAGC 1804150 Query 44350 AGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA 44409 || | | ||| |||||| | | || || | || || |||| | || ||||| Sbjct 1804149 TGTTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAA 1804090 Query 44410 -TG-AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTG 44467 || || |||||| |||||| ||||||| |||| ||| | ||| | || | || Sbjct 1804089 CTGTGAC--TTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCCTTG 1804032 Query 44468 GGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTG 44527 ||| | | ||| || | ||| ||||| || ||||| |||||||||||||| ||| Sbjct 1804031 GGTAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTG 1803972 Query 44528 GAAGGCAAAACAAACTTTTTTGAAAA 44553 | || ||||| |||||||| ||||| Sbjct 1803971 GCTGGTAAAACCAACTTTTTCGAAAA 1803946 Score = 185 bits (204), Expect = 7e-42 Identities = 419/617 (68%), Gaps = 15/617 (2%) Strand=Plus/Plus Query 43706 GTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTT 43765 ||||||||||| |||||| ||| || ||| | ||||| ||| | || |||||| Sbjct 1024855 GTGTTTCCAATAAAATATCCTGAAATTTGGACTTTCTACAAGAAATCTGTTGCATCATTT 1024914 Query 43766 TGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG---ATTGCATTAAAA 43822 ||||||||||||||| |||| |||| |||||| || | ||||| | | | | || Sbjct 1024915 TGGACAGCAGAAGAAATTGACTTGAGTAAAGATTTTGATGATTGGGAAAATAAAATGAAT 1024974 Query 43823 CCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 | | |||| | ||| || || ||||| || ||||||||||| || || ||| Sbjct 1024975 AAAGATGAAAGATTTTTCATCTCAAGAGTTTTAGCCTTTTTTGCTGCATCAGATGGTATA 1025034 Query 43883 GTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC-ACGAT 43940 ||||||||||| |||||| | |||| | |||||| || | || ||||| | | | Sbjct 1025035 GTCAATGAAAACTTGGTTGAAAACTTTTGTACT-GAAGTTAAACTTCCTGAAGCCAAGCT 1025093 Query 43941 GTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGA 44000 | ||| | || || || || |||||||| ||||| |||| || ||| | | Sbjct 1025094 GGTTT-ACAAATTCCAGATCATGATGGAAAATATCCATTCAGAAACATATTCCCTTTTAA 1025152 Query 44001 TAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA-AACA 44059 | || || ||| |||| ||| | ||| || ||||| || || || || || | Sbjct 1025153 TTGAAACCTACTTCAAGGATCCTAAGGAGGCCGATTTCTTGTTCAACGCCATTGACAATA 1025212 Query 44060 GTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA-AATTCAAATGATTC 44118 || | | ||| | |||||||| ||||| ||| |||||| || | || | | Sbjct 1025213 TTAAATAC-ATTGGTGAAAAAGCAGATTGGGCTATTAGATGGATTCAAGACGAAGAAGCC 1025271 Query 44119 TT--TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 || ||| |||| || | || || ||||| | | | |||||||||||||| || || Sbjct 1025272 TTGTTTGCAGAAAGATTGGTGGCATTTGCTGCTATTGAAGGCATTTTCTTCAGTGGGTCA 1025331 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 || || |||| || ||||| || ||| |||| |||||||| || || || || |||||| Sbjct 1025332 TTCGCTTCCATTTTCTGGTTGAAAAAAAGAGGGTTGATGCCAGGTTTAACTTTCTCAAAT 1025391 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296 || || || || | || ||||| | || ||||| |||||| || || || ||| Sbjct 1025392 GAATTGATCTGTAGGGACGAAGGTATTCACACCGATTATGCTTGTTTACTATTTTCATA- 1025450 Query 44297 CTAGGAGACGATAAGCC 44313 || ||||| ||||||| Sbjct 1025451 CTTGGAGA--ATAAGCC 1025465 >seq2 Length=1666313 Score = 178 bits (196), Expect = 1e-39 Identities = 325/473 (69%), Gaps = 21/473 (4%) Strand=Plus/Plus Query 19322 AACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAA 19381 || |||||| | ||||||| | || | || | ||||| || || ||| ||| | Sbjct 219918 AAAAATTGGATTATAAACATTGTAAAGGGTTGTTATTGTATGGTCCTCCAGGTACTGGTA 219977 Query 19382 AAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA---AAACAACCTCCCAAAATTG 19438 |||| |||||||| ||| || | |||| | | | ||| ||||| ||||||| Sbjct 219978 AAACTTTAATTGCCAGAAAATTATCTAAAATGTTGAATGGTAAAGAACCT---AAAATTG 220034 Query 19439 TAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTT 19498 | |||||||| ||||| || | ||||||||| ||| || ||||||||| | || || Sbjct 220035 TTAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCTTCTGAAGAAAATATTCGTAATT 220094 Query 19499 TGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT---TTGCACA 19555 | || || || |||| |||| | ||| | | || | | | |||| || || Sbjct 220095 TATTCAAAGATGCCGAAGCAGAATATAAAT-TAAAAGGTGAAGA--TTCTGATTTACATG 220151 Query 19556 TTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT---------G 19606 |||| || | ||||||||||| | | | || |||||||| || ||| | Sbjct 220152 TTATTATTTTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGGTCAGGTAAATCTGATG 220211 Query 19607 TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACC 19666 || ||| || ||| | ||||||||||||| | | || ||| | || |||||| | | Sbjct 220212 GAACTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCCAAAATGGATGGTGTTGATC 220271 Query 19667 AACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCT 19726 || |||||||||||||||||||||| ||||| ||| | |||| ||||| || | || | Sbjct 220272 AATTGAATAATATTTTAGTTATTGGTATGACCAATCGTTTGGATTTAATTGATACTGCAT 220331 Query 19727 TATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 | ||| |||| ||| | || ||||| | ||||||||| ||||| |||||| Sbjct 220332 TGTTAAGACCAGGTAGATTTGAAATTCAAATCGAAATTTCTTTACCTGATGAA 220384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455273400750