Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1 255 5e-63
seq2 178 1e-39
>seq1
Length=2377843
Score = 255 bits (282), Expect = 5e-63
Identities = 583/866 (67%), Gaps = 35/866 (4%)
Strand=Plus/Minus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
||||||||||| |||||||||| || ||| | | || |||||||| | || || || |
Sbjct 1804795 TGTTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTCCTTCT 1804736
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC--ATTAAAACC 43824
|||| |||||||||||||| | |||||| || | |||||| | | |||
Sbjct 1804735 GGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATTAAATG 1804676
Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883
|||| |||| | ||||| | ||| ||||| || ||||| ||||| || || || |
Sbjct 1804675 ACAATGAAAGATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTG 1804616
Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943
| |||||| ||| || ||| | ||||| ||| | |||||||| || |
Sbjct 1804615 TTGGTGAAAACTTGATTGAAAACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTAAATCAT 1804556
Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003
| ||||| || ||||| || ||||| |||||||| |||||||| | | | || |
Sbjct 1804555 TCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTATTAATTG 1804496
Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAATGCGATAGAAA-CAG 44060
| || || | ||||| ||| |||||| || ||||||||||| || |||| ||
Sbjct 1804495 AAACTTATGTTAAAGACC--CACAAGAAGCTGATTTCTTGTTTAATGCCATTGAAAACAT 1804438
Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120
| | || |||| | ||||| || |||||| | |||||||| | || ||| |||
Sbjct 1804437 TCCATGT-ATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGATGCTT 1804379
Query 44121 T---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177
| || ||| || | || || ||||| | | | ||||| |||||||| || || |
Sbjct 1804378 TATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCAT 1804319
Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237
|||| | || || ||||| || || ||||||||||||| || ||||| || || ||||
Sbjct 1804318 TTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATG 1804259
Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT--------ACT 44289
| || || || | |||||||| |||||| ||||||||||| ||||| |||
Sbjct 1804258 AATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCACT 1804199
Query 44290 TGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGC 44349
|| | | |||| || || || | | || | | ||| |||| || ||
Sbjct 1804198 TGCAACAC----AGACCAT----CTCCA---GAAATTGTTGAAAAGATTATTGTTGAAGC 1804150
Query 44350 AGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA 44409
|| | | ||| |||||| | | || || | || || |||| | || |||||
Sbjct 1804149 TGTTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAA 1804090
Query 44410 -TG-AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTG 44467
|| || |||||| |||||| ||||||| |||| ||| | ||| | || | ||
Sbjct 1804089 CTGTGAC--TTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCCTTG 1804032
Query 44468 GGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTG 44527
||| | | ||| || | ||| ||||| || ||||| |||||||||||||| |||
Sbjct 1804031 GGTAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTG 1803972
Query 44528 GAAGGCAAAACAAACTTTTTTGAAAA 44553
| || ||||| |||||||| |||||
Sbjct 1803971 GCTGGTAAAACCAACTTTTTCGAAAA 1803946
Score = 185 bits (204), Expect = 7e-42
Identities = 419/617 (68%), Gaps = 15/617 (2%)
Strand=Plus/Plus
Query 43706 GTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTT 43765
||||||||||| |||||| ||| || ||| | ||||| ||| | || ||||||
Sbjct 1024855 GTGTTTCCAATAAAATATCCTGAAATTTGGACTTTCTACAAGAAATCTGTTGCATCATTT 1024914
Query 43766 TGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG---ATTGCATTAAAA 43822
||||||||||||||| |||| |||| |||||| || | ||||| | | | | ||
Sbjct 1024915 TGGACAGCAGAAGAAATTGACTTGAGTAAAGATTTTGATGATTGGGAAAATAAAATGAAT 1024974
Query 43823 CCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882
| | |||| | ||| || || ||||| || ||||||||||| || || |||
Sbjct 1024975 AAAGATGAAAGATTTTTCATCTCAAGAGTTTTAGCCTTTTTTGCTGCATCAGATGGTATA 1025034
Query 43883 GTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC-ACGAT 43940
||||||||||| |||||| | |||| | |||||| || | || ||||| | | |
Sbjct 1025035 GTCAATGAAAACTTGGTTGAAAACTTTTGTACT-GAAGTTAAACTTCCTGAAGCCAAGCT 1025093
Query 43941 GTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGA 44000
| ||| | || || || || |||||||| ||||| |||| || ||| | |
Sbjct 1025094 GGTTT-ACAAATTCCAGATCATGATGGAAAATATCCATTCAGAAACATATTCCCTTTTAA 1025152
Query 44001 TAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA-AACA 44059
| || || ||| |||| ||| | ||| || ||||| || || || || || |
Sbjct 1025153 TTGAAACCTACTTCAAGGATCCTAAGGAGGCCGATTTCTTGTTCAACGCCATTGACAATA 1025212
Query 44060 GTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA-AATTCAAATGATTC 44118
|| | | ||| | |||||||| ||||| ||| |||||| || | || | |
Sbjct 1025213 TTAAATAC-ATTGGTGAAAAAGCAGATTGGGCTATTAGATGGATTCAAGACGAAGAAGCC 1025271
Query 44119 TT--TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176
|| ||| |||| || | || || ||||| | | | |||||||||||||| || ||
Sbjct 1025272 TTGTTTGCAGAAAGATTGGTGGCATTTGCTGCTATTGAAGGCATTTTCTTCAGTGGGTCA 1025331
Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236
|| || |||| || ||||| || ||| |||| |||||||| || || || || ||||||
Sbjct 1025332 TTCGCTTCCATTTTCTGGTTGAAAAAAAGAGGGTTGATGCCAGGTTTAACTTTCTCAAAT 1025391
Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296
|| || || || | || ||||| | || ||||| |||||| || || || |||
Sbjct 1025392 GAATTGATCTGTAGGGACGAAGGTATTCACACCGATTATGCTTGTTTACTATTTTCATA- 1025450
Query 44297 CTAGGAGACGATAAGCC 44313
|| ||||| |||||||
Sbjct 1025451 CTTGGAGA--ATAAGCC 1025465
>seq2
Length=1666313
Score = 178 bits (196), Expect = 1e-39
Identities = 325/473 (69%), Gaps = 21/473 (4%)
Strand=Plus/Plus
Query 19322 AACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAA 19381
|| |||||| | ||||||| | || | || | ||||| || || ||| ||| |
Sbjct 219918 AAAAATTGGATTATAAACATTGTAAAGGGTTGTTATTGTATGGTCCTCCAGGTACTGGTA 219977
Query 19382 AAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA---AAACAACCTCCCAAAATTG 19438
|||| |||||||| ||| || | |||| | | | ||| ||||| |||||||
Sbjct 219978 AAACTTTAATTGCCAGAAAATTATCTAAAATGTTGAATGGTAAAGAACCT---AAAATTG 220034
Query 19439 TAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTT 19498
| |||||||| ||||| || | ||||||||| ||| || ||||||||| | || ||
Sbjct 220035 TTAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCTTCTGAAGAAAATATTCGTAATT 220094
Query 19499 TGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT---TTGCACA 19555
| || || || |||| |||| | ||| | | || | | | |||| || ||
Sbjct 220095 TATTCAAAGATGCCGAAGCAGAATATAAAT-TAAAAGGTGAAGA--TTCTGATTTACATG 220151
Query 19556 TTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT---------G 19606
|||| || | ||||||||||| | | | || |||||||| || ||| |
Sbjct 220152 TTATTATTTTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGGTCAGGTAAATCTGATG 220211
Query 19607 TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACC 19666
|| ||| || ||| | ||||||||||||| | | || ||| | || |||||| | |
Sbjct 220212 GAACTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCCAAAATGGATGGTGTTGATC 220271
Query 19667 AACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCT 19726
|| |||||||||||||||||||||| ||||| ||| | |||| ||||| || | || |
Sbjct 220272 AATTGAATAATATTTTAGTTATTGGTATGACCAATCGTTTGGATTTAATTGATACTGCAT 220331
Query 19727 TATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779
| ||| |||| ||| | || ||||| | ||||||||| ||||| ||||||
Sbjct 220332 TGTTAAGACCAGGTAGATTTGAAATTCAAATCGAAATTTCTTTACCTGATGAA 220384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397455273400750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |