Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq1 107 2e-18 >seq5 Length=745199 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | ||| ||||| || || ||||| ||||||||||| |||||||| | Sbjct 622550 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGAC 622609 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||||| | |||||||| ||| |||| | | |||||||| || || Sbjct 622610 AAGGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 622669 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| ||| ||| ||| | | | || | ||||| | | ||| ||| Sbjct 622670 ATACCTTCTTTATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTCGACT 622729 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| || |||| ||| || || | |||||| || || ||||||||| Sbjct 622730 TCTAAGGTAATAGTTTTACCAGTTAAAGTTTTAACGAAAATTTGCATA 622777 >seq1 Length=2377843 Score = 107 bits (118), Expect = 2e-18 Identities = 423/654 (65%), Gaps = 21/654 (3%) Strand=Plus/Plus Query 130547 GATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTT 130606 ||||| ||||||||||| ||||| | || || |||||||| || | || ||| | | Sbjct 1847478 GATTGAGATTGATCAATGAAAGCAGCTCTATCAGCAGCCATATCAATGATATGTTTTTGT 1847537 Query 130607 TTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCG-CAATCGA 130665 || |||||| | |||||||| | | || | || | | || ||| | ||| | Sbjct 1847538 GAAATTTCCCAAACAGTCTTGTACAAAGCCTTGATTTCATCTGGGATGTTTGGCAAACCT 1847597 Query 130666 TTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGTAC--AAT-CC 130722 | || || ||| ||||||| ||||| ||| | | | | ||| | | ||| || Sbjct 1847598 TGGATCGA-ACCATTGTTGGAAATAAT---GTTACTCTTCATAGCATCATTCCAAATACC 1847653 Query 130723 AAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGAC 130782 | | || | ||| || | ||| | ||| | ||||| || |||||||||| || Sbjct 1847654 CAAATCAACCAAATCCTTCAACAAGTATGGATTGACAATTTGGAATTCACCAGCCAAAAC 1847713 Query 130783 GCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTG 130842 | |||| |||||||||| ||| | ||||| || |||| ||||| || || ||||| Sbjct 1847714 TCTTCTAGAGTAAATGTTGGAAGTGTAAGGTTCGAAACATTCATTGTTACCCAAGATTTG 1847773 Query 130843 TGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGT 130902 || |||| || || ||||| || || || | || || | | ||| || | | Sbjct 1847774 TGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAGGAGTTTCTCAAACCATGTTTGGC 1847833 Query 130903 GATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACAT 130962 || ||| | ||||| |||||||||||||| || ||||| ||||||||| Sbjct 1847834 CATCTTTTGTTTCAAAGTATCCCAATCCCATAATTCAGTTGGTTT---TCTGTTCCACAA 1847890 Query 130963 ATCAAATTGTAGTATGCCTTTA----CTGGCGGGACTGGATTCGAACGATTCGTAGATTC 131018 |||||||||| || |||| | |||| | |||| | ||| ||| |||| | Sbjct 1847891 GTCAAATTGTAATAAACCTTGAGAAGCTGGAGAACCTGGGT---AAC-TTTCATAGACAC 1847946 Query 131019 CTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAA 131078 |||| || ||| | || | || ||| | ||| | | ||||||||||| | Sbjct 1847947 CTTCTTCAGCAGCTAATTCAATAGAAGATTCAACAGCAGCATGGTAAATGGTTTCAAAGA 1848006 Query 131079 TTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAG 131138 |||| | ||||||| | | |||| | || | || ||| ||| | ||||||| Sbjct 1848007 TTTGAATGTTTAATTCTCTAGCTTCTTGAGAATCAAATGGCAATCTCAAAGACATAAAAG 1848066 Query 131139 CGTCTGCGAGACCCTGTA-TCCCAACGCCCACCGGTCTATGTTTTAAATTACAT 131191 | || || | ||| || | ||||| | | | ||||| ||| | | |||| || Sbjct 1848067 CATCAGCTAAACCTTGAACACCCAAAG-CAATTGGTCTGTGTCTCATATTAGAT 1848119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933623166800