Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 230 3e-55 seq21 120 4e-22 seq3 98.7 1e-15 >seq1 Length=2377843 Score = 230 bits (254), Expect = 3e-55 Identities = 855/1321 (65%), Gaps = 37/1321 (3%) Strand=Plus/Plus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 |||||||| || ||||| || | |||||| ||| ||||| | ||||| ||| Sbjct 1847685 TTGACAATTTGGAATTCACCAGCCAAAACTCTTCTAGAGTAAATGTTGGAAGTGTAAGGT 1847744 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 || || |||||||| |||||||||||||||| || || || ||||||||||| || | | Sbjct 1847745 TCGAAACATTCATTGTTACCCAAGATTTGTGAAGTAGAAGCAGTTGGCATTGGAGCAACC 1847804 Query 110789 AAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG--T 110846 || | ||| | | ||| | | || || || | | |||||| || | Sbjct 1847805 AACAAGGAGTTTCTCAAACCATGTTTGGCCATCTTTTGTTTCAAAGTATCCCAATCCCAT 1847864 Query 110847 AGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAG 110906 | || || ||||||| |||| ||| |||||| || | | ||||| || || |||| Sbjct 1847865 AATTCAG-TTGGTTTTCTGTTCC-ACAAGTCAAATTGTAATAAACCTTGAGAAGCTGGAG 1847922 Query 110907 AACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGG 110966 |||| | |||||||| ||||| | |||| |||||| | || | | Sbjct 1847923 AACCTGGGTAACTTTCATAGACACCTTCTTCAGCAGCTAATTCAATAGAAGATTCAACAG 1847982 Query 110967 ATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAA 111026 || || || |||||||||||||| || || | || | ||||| | ||||||| Sbjct 1847983 CAGCATGGTAAATGGTTTCAAAGATTTGAATGTTTAATTCTCTAGCTTCTTGAGAATCAA 1848042 Query 111027 ATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTC 111086 ||| | | | | ||||| |||| || | |||||||||||||||| |||| |||| Sbjct 1848043 ATGGCAATCTCAAAGACATAAAAGCATCAGCTAAACCTTGAACACCCAAAGCAATTGGTC 1848102 Query 111087 TGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGAC 111144 |||||| ||||||||| ||||| || ||| ||| || || | || | || || || Sbjct 1848103 TGTGTCTCATATTAGATCTTTC-AGC-TTCTGGAACTGGGTAGTAGTTACGATCGATAAC 1848160 Query 111145 TCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA---TAATCAAA 111201 || ||| | || || |||| || || | |||||| | ||||||| | || | Sbjct 1848161 TCTGTTCAAGTTACGAGTGACAACTTTAGTAACTTCATGCAATTTTTCAAAGTTATACCA 1848220 Query 111202 AGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 111255 ||| | | ||||| | ||| | ||| | || || || ||||| || || Sbjct 1848221 AGT---ATTGCTTTCATCGTGTTCAACAAAAGATGGCAATGCAATGGAAGCCAAGTTACA 1848277 Query 111256 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTT 111315 |||||| ||||| | | | || || | |||||| ||| ||||||||| || Sbjct 1848278 AACAGCAACTTCATCTGGAGCAGAATATTCAACAATTTCACAACACAAGTTGGAAGATTT 1848337 Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 || |||||||||||||||||| |||| |||| || ||||| || || | ||| | Sbjct 1848338 GATGACACCCAAATTCTTTTGGTTAGTCTTGGTGTTACAAGCATCTTTATACAACATAAA 1848397 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGT 111433 || || || || || || || | | | ||||| | ||| | | ||| || | Sbjct 1848398 TGGAGTACCAGTTTCGGTTTGGGCACTCAAGATAGCGTACCATAATTTTTGGGCTTTGAT 1848457 Query 111434 ACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 || | | | || |||| ||||| | || || | ||||||| || ||| Sbjct 1848458 GGTTTGTC--TACCACGGTTCTCCTTTTCGTATCTGGTATATAATTCTTCAAATTCATCA 1848515 Query 111494 CCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || | || || | |||||| || | | |||| |||| | || ||| | ||| | Sbjct 1848516 CCGTAGACATCTGACAAACCTGGAGCTTCATTTGGAGAGAACAAAGTCCAGTCACCGTTT 1848575 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT-ACA 111612 | ||||| | ||||||||| | ||||| ||||||| | || || | ||||| | Sbjct 1848576 TGTTCAACTCTCTTCATGAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTGGCT 1848635 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 | || ||||| | ||| ||||| || | || | || || | |||||| ||| Sbjct 1848636 CTGA-TTTCTTCTTTACCGTGGTTCTTTCTAATATCGATAAAGTCAAAGATATCACTGTG 1848694 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACAT 111728 |||||| || | || | || | || || || | | ||| |||||| |||| Sbjct 1848695 CCATGGTTCCAAGTATAAAGCAAAAGCACCTGGTCTCTTG-TTACCACCTTGATCAACAT 1848753 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 | || || ||| ||| || || | | ||| ||||||||||| | || |||||| | Sbjct 1848754 AACGAGCAGTGTTGTTGAAAACTCTGACCATAGGAATAATACCGTTGGAAGTACCATTAG 1848813 Query 111789 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 111848 | || ||| || | ||| | | | |||||||||| |||||||| |||| Sbjct 1848814 TACCAGCAATGTAAGCACCAGTGGAACGAATGTTGTGGATGTGCAAACCAATACCACCAG 1848873 Query 111849 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 111908 | | ||| || ||| ||||| | | ||| | || ||||| | || || || | Sbjct 1848874 CACTCTTGGAAATTAAAGCACATGATTTCAAAGTATCGTAAATACCTTCAATGGAATCAT 1848933 Query 111909 CCTTGTTGGCGATAAGGAAGCAAC-TG--GACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 |||| | || ||| ||| ||| || ||||| || |||||||| ||||| ||||||| Sbjct 1848934 CCTTCATAGC---AAGCAAGAAACATGAAGACATTTGTGGTCTTGGGGTACCGGCATTGA 1848990 Query 111966 A 111966 | Sbjct 1848991 A 1848991 >seq21 Length=244291 Score = 120 bits (132), Expect = 4e-22 Identities = 333/501 (66%), Gaps = 26/501 (5%) Strand=Plus/Plus Query 110714 TTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTT 110773 |||| ||| || |||||||| ||||||||| || || ||||||| |||||| ||||| Sbjct 7456 TTTGATGTATAAGGTTCAAAACATTCATTAAATCCTAAAATTTGTGAGGTGGAAGCTGTA 7515 Query 110774 GGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG-ATGCGTTCCTTGAG 110832 ||||||||||| | |||||| || | | |||| | ||| |||| ||| ||||| Sbjct 7516 GGCATTGGTGCAACCAAAAGGGAATTTCTTA-ACCCAAATTTTTGAATGCTTTCTTTGAG 7574 Query 110833 AACATCCCAGTCGTA---GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC 110889 || ||||||||| || | || | | | |||||| ||||| || || | Sbjct 7575 TTTATTCCAGTCGTACATCTTAGACGGAGTATGA---TTCCACATATCAAATTGTAGAAT 7631 Query 110890 CCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTT---CAGCCAA 110946 |||| || || || || || | ||| |||||||| | || | ||| || || Sbjct 7632 ACCTTCAGATGCAGGTGATCCTTGAAAAGTTTCATATGGTCC---GTCTTGAATAGATAA 7688 Query 110947 TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTC 111006 |||| || || || | || || || || |||||||| || || ||| | | Sbjct 7689 TTCAACTGAAGCTTCAAGAGCCGCATGGTAGATTGTTTCAAATATCTGAATATTTAATTT 7748 Query 111007 CTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAAT-----AAATACATCCGCGAGA 111061 | | || | ||||| ||||||| ||||| | || | ||||| ||| || | Sbjct 7749 CCTAGCAGCTTCTGATTCAAATG-GTAGC----CTAAGTTCGGCAAATAAATCTGCTAAC 7803 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT-TTCGCGCAGTCTCAAC 111120 |||||||||||||| |||| || | || || |||| || | |||| || |||||||| Sbjct 7804 CCTTGAACACCCAAGGCAATTGGACGGTTACGTTTATTTGAGTATTCG-GCTGTCTCAAC 7862 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 ||||| || || || || ||| ||| | ||||| | | | ||| |||| Sbjct 7863 AGGATATAATGTTACATCGATCACTTTGTTCAAGTTTTTAGCCAACACCTTGGTGACAGA 7922 Query 111181 ATGAAGTTTTTCATAATCAAA 111201 ||| ||||| || ||||||| Sbjct 7923 ATGTAGTTTCTCGAAATCAAA 7943 >seq3 Length=1232947 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 |||||| | ||||| ||||| || || | ||||| || ||||||||| |||||| Sbjct 1215398 TATGGTAGAGTTGCTCCACGTTCTGGATTAGCTGTTAAACATGGTATTTCTACTGGTGCT 1215457 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 |||||||||||| | || ||| |||||||| ||||| ||| | || ||||| | || Sbjct 1215458 GGTGTTATTGATGCTGATTATCGTGGTGAAGTTAAAGTTGTTTTATTTAATCATAGTGAA 1215517 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAA 164762 ||||| ||||| | || |||| ||| | || || ||| Sbjct 1215518 AAAGATTTTGAAATTAAACAAGGTGATAGAATTGCTCAA 1215556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030822440000