Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 277 2e-69 seq21 136 5e-27 seq3 84.2 3e-11 >seq1 Length=2377843 Score = 277 bits (306), Expect = 2e-69 Identities = 1174/1816 (65%), Gaps = 59/1816 (3%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTC-TTGA 104213 || |||||| |||||||| | || |||| | ||| | ||| || | ||| ||| Sbjct 1849174 TACTTTGGTTTCAAAACCATGGA-AAGATCATATTTGTTACGTATCAACGGTAAAGTTGC 1849116 Query 104214 TGGAAACCCCACAGTACATGT--TCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 || ||| ||||| |||| | | ||| | || || || |||||||| || |||| || Sbjct 1849115 TG-AAAGACCACA--ACATTTAATTATGAGAGTTGCTATTGGTATTCACGGTAAAGATAT 1849059 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACAC 104330 | || | || || || | |||||| ||| | ||| |||| |||| | | Sbjct 1849058 TCCAAGAGTTATTGAAACTTATAATTTGATGTCACAAAGATAT-TTCACACACGGTTCCC 1849000 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTC--CA-GTTGCTTCCTTATCG 104387 || | |||||||| ||||| |||||||| |||||||| || ||| ||| ||| | Sbjct 1848999 CATGTTTGTTCAATGCCGGTACCCCAAGACCACAAATGTCTTCATGTTTCTTGCTT---G 1848943 Query 104388 CCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCT 104447 | | ||||| || || || | ||||| || | ||| | | ||||| ||| | Sbjct 1848942 CTATGAAGGATGATTCCATTGAAGGTATTTACGATACTTTGAAATCATGTGCTTTAATTT 1848883 Query 104448 CAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA 104507 | ||| | ||||| |||||||| |||||||||| | | | ||| | || | Sbjct 1848882 CCAAGAGTGCTGGTGGTATTGGTTTGCACATCCACAACATTCGTTCCACTGGTGCTTACA 1848823 Query 104508 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 104567 || || || |||||| || | ||||||||||| ||| | | || || ||| || Sbjct 1848822 TTGCTGGTACTAATGGTACTTCCAACGGTATTATTCCTATGGTCAGAGTTTTCAACAACA 1848763 Query 104568 CAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTT 104623 | || || ||||| |||||| ||| | | || || || | || | || | Sbjct 1848762 CTGCTCGTTATGTTGATCAAGGTGGTAA-CAAGAGACCAGGTGCTTTTGCTTTATACTTG 1848704 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 || ||||||||| |||||| | || || | || | | ||||| ||| | || Sbjct 1848703 GAACCATGGCACAGTGATATCTTTGACTTTATCGATATTAGAAAGAACCACGGTAAAGAA 1848644 Query 104684 GAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 || | | ||| | || | ||| | ||| | ||||| |||||| | ||||||||||| Sbjct 1848643 GAAAT-CAGAGCCAGAGACTTGTTCCCAGCTTTGTGGATCCCAGATTTGTTCATGAAGAG 1848585 Query 104743 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802 |||||| | | || | ||| || | || | |||| | | || || ||| | || || Sbjct 1848584 AGTTGAACAAAACGGTGACTGGACTTTGTTCTCTCCAAATGAAGCTCCAGGTTTGTCAGA 1848525 Query 104803 TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGA--AGAAGGTCGGGCG 104860 || | ||||| || ||||||| | || || | ||||| | |||| || | Sbjct 1848524 TGTCTACGGTGATGAATTTGAAGAATTATATACCAGATACGAAAAGGAGAACCGTGGTAG 1848465 Query 104861 ACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGT-CTCAAACCGAGAC 104919 || || | ||| | | ||| | ||||| || ||| | |||||||| || Sbjct 1848464 ACAA--ACCATCAAAGCCCAAAAATTATGGTACGCTAT-CTTGAGTGCCCAAACCGAAAC 1848408 Query 104920 TGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTT 104979 |||||| |||| ||| | || ||||| || |||||| |||| ||| ||||||||||| Sbjct 1848407 TGGTACTCCATTTATGTTGTATAAAGATGCTTGTAACACCAAGACTAACCAAAAGAATTT 1848348 Query 104980 GGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGA 105039 |||||| ||||| |||||| | ||| ||||| | |||| | | | |||||| Sbjct 1848347 GGGTGTCATCAAATCTTCCAACTTGTGTTGTGAAATTGTTGAATATTCTGCTCCAGATGA 1848288 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GACAA 105098 ||||| |||||| | || || || || | || | ||| || | || || | Sbjct 1848287 AGTTGCTGTTTGTAACTTGGCTTCCATTGCATTGCCATCTTTTGTTGAACACGATGAAAG 1848228 Query 105099 AGACATTTGAT-----TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153 | | ||| | | ||||||| | || |||||||| ||| |||||| ||| | Sbjct 1848227 CAATACTTGGTATAACTTTGAAAAATTGCATGAAGTTACTAAAGTTGTCACTCGTAACTT 1848168 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGA 105212 ||||||||||| ||| | || | ||||| ||| ||| ||| | ||||||||||| Sbjct 1848167 GAACAGAGTTATCGATCGTAACTACTACCCAGTTCCAGAA-GCTGAAAGATCTAATATGA 1848109 Query 105213 GACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTG---T 105268 ||||| | ||||||| | | |||||||| ||| | || |||| || || |||||| | Sbjct 1848108 GACACAGACCAATTGCTTTGGGTGTTCAAGGTTTAGCTGATGCTTTTATGTCTTTGAGAT 1848049 Query 105269 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328 || |||||||||| | ||||| | ||| | || | || ||||| ||||| Sbjct 1848048 TGC----CATTTGATTCTCAAGAAGCTAGAGAATTAAACATTCAAATCTTTGAAACCATT 1847993 Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388 || || || ||| |||| | | || || || | | || ||| ||||||| Sbjct 1847992 TACCATGCTGCTGTTGAATCTTCTATTGAATTAGCTGCTGAAGAAGGTGTCTATGAAAGT 1847933 Query 105389 TTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC 105448 | |||||||||||||| ||||| | | |||||||| ||| |||| | ||| Sbjct 1847932 TACCCAGGTTCTCCAGCTTCTCAAGGTTTATTACAATTTGACTTGT-GGAACAGAAAACC 1847874 Query 105449 AAGCTTCACTA--CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTA 105506 || || | || || ||||| || | || || || | | ||| | | | Sbjct 1847873 AA-CTGAATTATGGGATTGGGATACTTTGAAACAAAAGATGGCCAAACATGGTTTGAGAA 1847815 Query 105507 ACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 105566 || | | | |||||||||||||| || || || |||||||||||||||| |||| Sbjct 1847814 ACTCCTTGTTGGTTGCTCCAATGCCAACTGCTTCTACTTCACAAATCTTGGGTAACAATG 1847755 Query 105567 AATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTT 105625 |||| || ||||| ||||| | ||||| || ||| |||||| | || || || || Sbjct 1847754 AATGTTTCGAACCTTACACTTCCAACATTTACTCT-AGAAGAGTTTTGGCTGGTGAATTC 1847696 Query 105626 GTGATTGTCAA--CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGG 105683 |||||||| || | | | || | || | || | ||| | ||| | | Sbjct 1847695 CAAATTGTCAATCCATACTTGT--TGAAGGATTTGGTTGATTTGGGTATTTGGAATGATG 1847638 Query 105684 ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAA 105743 ||||||| | ||| | |||||| || ||| | | | || ||| Sbjct 1847637 CTATGAAGAGTAACATTATTTCCAACAATGGTTCGATCCAAGGTTTGCCAAACATCCCAG 1847578 Query 105744 ATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGA 105801 ||||||| ||| |||||| || |||||||||| ||| | || || ||||||| Sbjct 1847577 ATGAAATCAAGGCTTTGTACAAGACTGTTTGGGAAATTTCACAA--AAACATATCATTGA 1847520 Query 105802 CATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGA 105861 ||||| || ||| | | | |||||||||||| |||| | ||||| | ||| | Sbjct 1847519 TATGGCTGCTGATAGAGCTGCTTTCATTGATCAATCTCAATCTTTGAATATTCACATTAA 1847460 Query 105862 AAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAA 105921 | |||||| ||| || | | |||||| | || |||||||||||||| | || Sbjct 1847459 AGATCCAACTATGGGTAAATTGACAAGTATGCATTTCTATGGTTGGAAGAAGGGTTTGAA 1847400 Query 105922 AACGGGGATGTATTAC 105937 || || ||||| ||| Sbjct 1847399 GACTGGTATGTACTAC 1847384 >seq21 Length=244291 Score = 136 bits (150), Expect = 5e-27 Identities = 633/985 (64%), Gaps = 45/985 (5%) Strand=Plus/Minus Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952 ||| ||| | | || ||||| || || ||| ||||| |||||||| ||||| ||||| Sbjct 8163 AGCAATTTTAGAATCACAAACTGAAACCGGTGGCCCATATATGCTTTATAAAGATGCCTG 8104 Query 104953 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGA 105012 ||| |||| ||||| || || | ||| |||||| || ||| | || || Sbjct 8103 TAATGAAAAATCAAATCAGAAAAACCTTGGTACAATCAAGTCGTCAAATTTGTGCTGTGA 8044 Query 105013 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 ||| | |||| | || ||| || || ||||||||||| |||| || | || | Sbjct 8043 AATTGTTGAATATTCATCACCAGAAGAAACAGCTGTGTGTAATCTCGGGTCCCTTGCATT 7984 Query 105073 CCCCAAGTATGTGGATCCA---GA-GACAAAGACAT-----TTGATTATGAAAAACTCCA 105123 || | |||| || | || || || ||| || |||||| || ||||| || Sbjct 7983 ACCGACGTATTTGAAAACATCCGATGATGAAGTAATAGAGTTTGATTTCGAGAAACTACA 7924 Query 105124 CGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC 105183 || || || | | |||||| | |||| ||| || ||| || || || || Sbjct 7923 TTCTGTCACCAAGGTGTTGGCTAAAAACTTGAACAAAGTGATCGATGTAACATTATATCC 7864 Query 105184 CGTTGAGACTGCTCGTAAA-TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 |||||||| || || | | || |||| | |||||||||||| | |||||||| | Sbjct 7863 TGTTGAGACAGC-CGAATACTCAAATAAACGTAACCGTCCAATTGCCTTGGGTGTTCAAG 7805 Query 105243 GTCTCGCGGATGTATT---CATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGG 105299 | | || ||| |||| | ||| | || || ||||||| || || | || | | Sbjct 7804 GGTTAGCAGATTTATTTGCCGAACTTAG--GCTAC-CATTTGAATCAGAAGCTGCTAGGA 7748 Query 105300 AAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG--AGTTCAGA 105357 || | ||| | |||||||| || || || || || |||||||| || |||| || Sbjct 7747 AATTAAATATTCAGATATTTGAAACAATCTACCATGCGGCTCTTGAAGCTTCAGTT--GA 7690 Query 105358 GTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGT 105417 || | || || ||||||||||| ||| | || || || || || |||| | Sbjct 7689 ATTATCTATTCAAGACGGACCATATGAAACTTTTCAAGGATCACCTGCATCTGAAGGTAT 7630 Query 105418 GCTTCAATTTGATATGTGG---GAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCT 105474 || ||||||||||||||| | | | | ||| | ||||||||| | || Sbjct 7629 TCTACAATTTGATATGTGGAATCATACTCCGTCTAAGAT---GTACGACTGGAATAAACT 7573 Query 105475 CAAGGAACGCA-TCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAA 105533 ||| ||| ||| |||| | |||| | | || || | | || |||||||| | Sbjct 7572 CAAAGAAAGCATTCAAAAATTTGGGT-TAAGAAATTCCCTTTTGGTTGCACCAATGCCTA 7514 Query 105534 CAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACA 105593 |||| |||||| ||||||| || || ||||||||| |||||||| || || | || Sbjct 7513 CAGCTTCCACCTCACAAATTTTAGGATTTAATGAATGTTTTGAACCTTATACATCAAATT 7454 Query 105594 TCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATG 105653 | ||| | || | | |||||||| | | || || ||| || | | | | Sbjct 7453 TATATAACCGTAGGGTGTTGTCAGGAGAGTTCCAGGTGGTTAATAAGTATTTAATTAAAG 7394 Query 105654 ACCTCAAAGAGATTGGTCTCTGG---TC--CAAGGATATGAAGGATCTCATGGTGAAAGC 105708 || | | || | ||| | ||| || ||| || | || | ||||| || || Sbjct 7393 ACTTGATGGATTTGGGTATTTGGAATTCAGCAATGAGA--AATAAAATCATGATGGAA-- 7338 Query 105709 GGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCAC 105768 ||| |||||||||||||| | ||||| || || || || | ||||| || Sbjct 7337 -AATGGCTCCATTCAAAATATACAGAGCATTCCCAAAGACATCAAAGAATTGTATAAAAC 7279 Query 105769 AGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTT 105825 ||| |||||||| | | | ||| | | ||||| ||||| || ||| | ||| || Sbjct 7278 AGTGTGGGAAATTTCCCAAA--AAGTA-ATAATTGATATGGCAGCTGATAGAGGTAAATT 7222 Query 105826 CATTGATCAAAGTCAAAGTATGAAT 105850 ||||||||| |||||||||||| Sbjct 7221 TATTGATCAACTGCAAAGTATGAAT 7197 >seq3 Length=1232947 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165 ||||| | ||||| ||||| ||||| | ||||| ||||||||||| |||||| Sbjct 1215398 TATGGTAGAGTTGCTCCACGTTCTGGATTAGCTGTTAAACATGGTATTTCTACTGGTGCT 1215457 Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGAC 154225 |||||| ||||| | || || |||||||| ||||| ||| | || ||||| | || Sbjct 1215458 GGTGTTATTGATGCTGATTATCGTGGTGAAGTTAAAGTTGTTTTATTTAATCATAGTGAA 1215517 Query 154226 AAAGACTTTGA 154236 ||||| ||||| Sbjct 1215518 AAAGATTTTGA 1215528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259706386000