Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq16 105 8e-18 >seq1 Length=2377843 Score = 127 bits (140), Expect = 2e-24 Identities = 245/359 (68%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 ||||| || | || ||||| ||||| ||| || || | | |||||| || ||||| Sbjct 1848738 CCACCTTGATCAACATAACGAGCAGTGTTGTTGAAAACTCTGACCATAGGAATAATACCG 1848797 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGAT-TGA 81497 | || ||| || ||||| | || | || ||| || | ||| ||| || Sbjct 1848798 TTGGAAGTACCATTAGTACCAGCAATGTAAGCACCAGTGGAACGAATGTTGTGGATGTGC 1848857 Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 || ||| || ||||| | | ||| ||||| |||||| |||| || || ||||| Sbjct 1848858 AA-ACCAATACCACCAGCACTCTTGGAAATTAAAGCACATGATTTCAAAGTATCGTAAAT 1848916 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617 || || ||| ||| | ||||| ||||||||||||| ||||| || || ||| Sbjct 1848917 ACCTTCAATGGAATCATCCTTCATAGCAAGCAAGAAACATGAAGACATTTGTGGTCTTGG 1848976 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 | ||||||||||||| ||||| |||| ||||||| | | |||||||| | Sbjct 1848977 GGTACCGGCATTGAACAAACATGGGGAACCGTGTGTGAAATATCTTTGTGACATCAAATT 1849036 Query 81678 ATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 ||| ||||| | || | ||||||||| | |||||||||||| ||||| || | ||||| Sbjct 1849037 ATAAGTTTCAATAACTCTTGGAATATCTTTACCGTGAATACCAATAGCAACTCTCATAA 1849095 >seq16 Length=329187 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | || || || |||||||| | || || || || Sbjct 297273 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCCTCC 297332 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || ||||||| || ||||| || || ||||| ||||| || Sbjct 297333 GACACCATTGACAATGTCAAATCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 297392 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||| ||| | || |||| | | || | | ||||| || Sbjct 297393 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAAC 297452 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| || | || | |||||| Sbjct 297453 ATCCAAAAGGAATCTACCTTGCACTTGGTCTTG 297485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309330668000