Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq16 111 1e-19 seq5 105 5e-18 >seq16 Length=329187 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || || || | ||||| ||| |||||| | || |||||| | Sbjct 297270 AAGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCC 297329 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| |||||| ||||| |||||||||||| |||| | Sbjct 297330 TCCGACACCATTGACAAT--GTCAAATCTAAAATCCAAGACAAAGAAGGTATTCCACCAG 297387 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || ||||| || ||||||||||| || | | | ||||| || | Sbjct 297388 ATCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACT 297447 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || || ||||| ||||| ||| | ||| | || || Sbjct 297448 ACAACATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGG 297499 >seq5 Length=745199 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||| | ||||| ||| |||||| | || |||||| | Sbjct 622776 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAATCTTCT 622717 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | || |||||| ||||| || ||||||||| |||| || | Sbjct 622716 GACACCATTGATAA--CGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCAGATC 622659 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || ||||| || || |||||||| || |||| | | |||||| || |||| Sbjct 622658 AACAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACCTTGTCTGACTACA 622599 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| |||||||| ||||| ||| | ||| | || || Sbjct 622598 ACATTCAAAAAGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 622550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861749439050