Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq16 127 1e-24 seq5 113 3e-20 >seq16 Length=329187 Score = 127 bits (140), Expect = 1e-24 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||| |||||||| || ||| | || || ||||| || || | ||||| || Sbjct 297267 TTAAAGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAA 297326 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 ||| | ||||| |||| ||| | ||| | |||| | |||||||||||| | || || Sbjct 297327 TCCTCCGACACCATTGACAATGTCAAATCTAAAA-TCCAAGACAAAGAAGGTATTCCACC 297385 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 ||||||||| | || || ||||| || |||||| ||||||| | | ||||| || Sbjct 297386 AGATCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGA 297445 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| ||||| || || || || || || || || || ||| |||| || Sbjct 297446 CTACAACATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGG 297499 >seq5 Length=745199 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| | || || ||||| || || | ||||| || || | Sbjct 622776 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAATCTTCT 622717 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| ||||| || ||||||||| | || ||||||||| Sbjct 622716 GACACCATTGATAACGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 622657 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || || || |||||| | ||||||| | || || || |||||| Sbjct 622656 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACCTTGTCTGACTACAAC 622597 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || || || || || || || ||| |||| || Sbjct 622596 ATTCAAAAAGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 622550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008982076200