Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 345 4e-90 >seq1 Length=2377843 Score = 345 bits (382), Expect = 4e-90 Identities = 623/900 (69%), Gaps = 12/900 (1%) Strand=Plus/Plus Query 4238 CTTTGAACA-AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTT 4296 |||| ||| ||||||| ||||||||| || || |||| ||||||||| || || |||| Sbjct 1803905 CTTTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTT 1803964 Query 4297 TGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT-T 4355 | || | || |||||||||||||| ||||| || || ||||| | |||||| ||| | Sbjct 1803965 TACCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCT 1804024 Query 4356 TCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGT 4415 | || || || | | |||| ||||| ||| |||| | ||| || | ||| | Sbjct 1804025 TGTTACCCAAG-GCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAG 1804083 Query 4416 TCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATA 4475 || ||||| || || | ||| || || || || | || ||| | |||| ||| | | Sbjct 1804084 TCACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACA 1804143 Query 4476 GTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTAT 4535 || ||||| || || | || | | ||| ||||||| | | | |||| Sbjct 1804144 TCAACAGCTTCAACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGG 1804203 Query 4536 CCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTA 4595 ||||| ||||| ||||||||| ||| |||||||| ||||| | |||| ||| || Sbjct 1804204 GAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTG 1804263 Query 4596 GAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGAC 4655 || || || || || ||||| |||||||||||||| | ||| || |||| |||||||| Sbjct 1804264 GAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAA 1804323 Query 4656 CCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC-GGGACCCGAACGAGCT 4714 ||| ||||| || ||||| | || ||||| || || |||| | | | ||| Sbjct 1804324 CCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGC- 1804382 Query 4715 GGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGT 4774 |||| |||| ||||||||| | ||||| | |||||| || ||| || ||||| | Sbjct 1804383 ATCTTTATCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTT 1804442 Query 4775 GTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAG 4834 | || || ||||| || | ||| |||||||| || |||||| || |||| Sbjct 1804443 TTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAA 1804502 Query 4835 TAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCT 4894 || ||||||||||||||| || ||||| || || || || || || || || | Sbjct 1804503 TAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTT 1804562 Query 4895 AGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACC 4954 |||||||| | ||| |||||| | |||| |||| | |||||||| || ||||| Sbjct 1804563 AGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACC 1804622 Query 4955 GTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA-CTGT--TCGTCAGGCTT 5011 ||| || || ||||| || ||||| ||| | ||| || || | | |||| || Sbjct 1804623 ATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCA--TTT 1804680 Query 5012 AAGT--TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAAC 5069 || | || ||||| | |||||||||| ||||||||||||||||| |||||| || Sbjct 1804681 AATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAG 1804740 Query 5070 GACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA 5129 || ||||| |||||||| || | | ||| || ||| |||| | ||| |||| || ||| Sbjct 1804741 GAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACA 1804800 Score = 284 bits (314), Expect = 1e-71 Identities = 602/884 (68%), Gaps = 17/884 (2%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| | ||||||| || || |||| |||||| |||||||| ||||| || | || Sbjct 1025735 ACACCAGCTCTTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAG 1025676 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || ||||||||||| |||||||| |||||||| |||| |||| || ||| | | Sbjct 1025675 GATATATTTTCCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCATTACCAAAA 1025616 Query 4368 GCTACAAGCAATCGGTCAGCTACAA-ATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 || || | ||||| || || |||| |||| | ||| || | ||| | || || || || Sbjct 1025615 GCAACCAACAATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCAT 1025557 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 || | || || || ||||| | | || ||| | ||| ||| | || ||||| Sbjct 1025556 ACCCAACAAAGAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTC 1025497 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGAT--GGTTTATTTACTAAGTATCCAAACAAT 4544 ||||| ||||||| | | || ||| || ||||| | |||||| ||| | | Sbjct 1025496 AGTGAT--AATCTTTTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGT 1025439 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| ||| |||| || | ||||||||| || | |||| ||| || || || ||| Sbjct 1025438 AAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTT 1025379 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || || ||||| || ||||| ||||| | ||| || || | || ||||||||| ||| Sbjct 1025378 AAACCTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAG 1025319 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || |||||||| | || ||||| || || |||| | ||| || ||| |||| Sbjct 1025318 AAAATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCT 1025259 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | ||||||| | | ||||| | ||||||| || | | ||| ||| || ||| Sbjct 1025258 TGAATCCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCG 1025199 Query 4785 TTAAATAATTTA-CTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || || || | | | | | | |||||| || || || |||| ||| ||| Sbjct 1025198 TTGAACAAGAAATCGGCCTCCTTAGGATCCTTGAA-GTAGGTTTCAATTAAAAGGGAATA 1025140 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATC-TAGCTTCTG 4902 |||| ||||| |||||||| || ||||| ||| || ||| || | | ||||| | Sbjct 1025139 TGTTTCTGAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAG 1025081 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | || |||||| ||||||| |||| || |||||||| || |||||||| || | Sbjct 1025080 GAAGTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATG 1025021 Query 4963 CTGCAAAAAACGCCAAAA--CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TT 5017 | |||||||| || |||| | |||||| ||| | || ||| || || | | || Sbjct 1025020 CAGCAAAAAAGGCTAAAACTCTTGAGATGAAAAAT-CT-TTCATCTTTATTCATTTTATT 1024963 Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 || ||| | ||||||||| | || |||| |||||| | |||||||| || || | Sbjct 1024962 TTCCCAATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAAC 1024903 Query 5078 CGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 | ||| ||||| | || |||||| |||||||| | || |||| Sbjct 1024902 AGATTTCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAA 1024859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048819299950