Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 seq16 140 7e-28 seq22 89.7 1e-12 >seq5 Length=745199 Score = 147 bits (162), Expect = 5e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||||||||| ||||||||||||| |||| || | || || |||| |||||| || || | Sbjct 622585 TTCTTTTTGAATGTTGTAGTCAGACAAG-GTTCTACCGTCTTCTAATTGTTTACCAGCGA 622643 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 | ||||| | |||||| || |||||||| || || |||||||| || | ||| ||| Sbjct 622644 AAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATTTTGGATTTGACGT 622703 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 |||| || ||||| |||| ||||||||| | || || || ||||| || ||||| |||| Sbjct 622704 TATCAATGGTGTCAGAAGATTCGACTTCTAAGGTAATAGTTTTACCAGTTAAAGTTTTAA 622763 Query 283087 CGAATATCTGCAT 283099 |||| || ||||| Sbjct 622764 CGAAAATTTGCAT 622776 >seq16 Length=329187 Score = 140 bits (154), Expect = 7e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| | || | ||||| || | |||||| || ||||| Sbjct 297464 TTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAA 297405 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | |||||| || |||||||| || ||||||||||| || | ||| || | Sbjct 297404 GATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGATTTGACATT 297345 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | ||||||||| | || || || ||||| || || ||||| || Sbjct 297344 GTCAATGGTGTCGGAGGATTCGACTTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGAC 297285 Query 283088 GAATATCTGCATTTT 283102 ||| || ||||| || Sbjct 297284 GAAAATTTGCATCTT 297270 >seq22 Length=238992 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/169 (72%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 317026 GTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA 317085 || ||||| ||||| | |||||||| |||| || ||||||| || || || || ||| Sbjct 186715 GTTGGGAAACCTTCAACTTGACCGTTAGCAATAGCTCTCATCAAGGTAGATTTACCGGCA 186656 Query 317086 CCATTGGGGCCGCAAAGACCATACCGA---TTTCCCTTCTTCAGATTAAAACGGGTGTTG 317142 ||||| || || || | ||| || | |||| |||||| | || |||| ||| Sbjct 186655 CCATTTGGACCACACAAACCGTATCTTCTGTTTC---TCTTCAATCTGAATTGGGTCTTG 186599 Query 317143 TTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACA 317191 |||| | |||||| ||||||| |||| ||||||||||| | ||||| Sbjct 186598 TTCAACAAGATCTTAGCACCATAAGCCAAGGAGAACTCACAGTTACACA 186550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737188298100