Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1 331 1e-85 >seq1 Length=2377843 Score = 331 bits (366), Expect = 1e-85 Identities = 607/888 (68%), Gaps = 20/888 (2%) Strand=Plus/Plus Query 23158 TTTTAAAAATCTTCATCTAAAGTGAA--------TTTCACTG-CTTTATCACTATTCATA 23208 ||||| ||||||||||| |||||||| |||| ||| ||| | | || |||| Sbjct 1803856 TTTTAGAAATCTTCATCAAAAGTGAAAGCACCGGTTTCTCTGTCTTCAGCTTTAGACATA 1803915 Query 23209 ACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAAT 23268 ||||| |||||| || || ||| | |||||||||| || || ||||| | || Sbjct 1803916 ACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAG 1803975 Query 23269 GATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATA-- 23326 || ||||||||||| ||||| ||||| |||| | ||| || || || | || || Sbjct 1803976 GAAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAAC----TTTCTTGTTACC 1804031 Query 23327 --ATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTT 23384 | | ||| | ||||| || ||| |||||| ||||||||||||||| ||| |||| Sbjct 1804032 CAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTT 1804091 Query 23385 TATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGC 23444 ||||| | || ||||||| |||||| || || |||||||| |||||| Sbjct 1804092 CATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGC 1804151 Query 23445 ATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAA 23504 || ||| || | ||| || |||| | ||| | || || | ||||| Sbjct 1804152 TTCAACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGAGAACAA 1804211 Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 ||||| ||||||||| ||||| |||||||| |||| ||||||||||| || || || Sbjct 1804212 CAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGT 1804271 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAA 23624 || |||||||| || |||| ||||| | ||| || || | ||||||||| || || Sbjct 1804272 CAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAA 1804331 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684 ||||||||| |||| ||| ||||| || || | | | | || || |||| | ||| Sbjct 1804332 GAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTATC 1804391 Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGC 23744 ||||||||| | | ||| | ||| ||| | | ||| ||| ||||||| || Sbjct 1804392 TTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGGC 1804451 Query 23745 TTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATA 23804 || || | ||| ||||| ||| | | ||| || ||||||| |||| ||| Sbjct 1804452 ATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAATA 1804511 Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864 ||||||||||||||| ||||| || || || || ||||| || || ||||||| | Sbjct 1804512 CATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTGG 1804571 Query 23865 CAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGC 23924 || ||| || || | |||| ||| | || ||||| ||||||||||||| ||| Sbjct 1804572 CAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAGC 1804631 Query 23925 AGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCAGTTGATAATTTTTT 23981 ||| || || || | ||| | ||||| ||||||| ||| || || || || Sbjct 1804632 AGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATTTAATTTGTTGTT 1804691 Query 23982 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 |||||||| | |||||| |||||||||||| ||| ||||| || Sbjct 1804692 CCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 1804739 Score = 183 bits (202), Expect = 3e-41 Identities = 561/856 (66%), Gaps = 21/856 (2%) Strand=Plus/Minus Query 23240 TTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAG 23299 |||| || ||||| || ||||| | || |||||||||||||| |||||||||||||||| Sbjct 1025704 TTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTTCCATGAAATCAAATGGATTAG 1025645 Query 23300 AAGTATTATATACAGCTTTACATGAT--AATTCCTTTAAAAGCCTATCTGCTACAA-ATT 23356 ||||| | | ||| ||| | || | || | ||||| || |||| ||| Sbjct 1025644 TCACGTTATA-ATA-CTTATCATTACCAAAAGCAACCAACAATCTATCGGC-ACAATATT 1025588 Query 23357 CAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCAT 23416 | | ||||||||||||||||||| | || ||||| | | ||||||| ||||||| Sbjct 1025587 CCACATATTGACACATCAAATCACAATTCATACCCAACAAAGAAACTGGAAGCGCATCAC 1025528 Query 23417 ATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCAC 23476 ||| | |||||||| |||||| || | || || | | |||| | Sbjct 1025527 TGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAATCTTTTCTATAATGGAAGGAT 1025468 Query 23477 TAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCAT 23536 || || | || || ||| | |||||| ||| |||| || | ||||| | Sbjct 1025467 CCGGCTTATTCTCCAAGTATGAAAATAGTAAACAAGCATAATCGGTGTGAATACCTTCGT 1025408 Query 23537 CCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCC 23596 |||||| ||||||||||| || || ||||| |||||||| || |||| |||||| | || Sbjct 1025407 CCCTACAGATCAATTCATTTGAGAAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAACC 1025348 Query 23597 AAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAA 23656 | || || | ||| ||||| || |||||||| || |||| ||| ||||| ||||| | Sbjct 1025347 AGAAAATGGAAGCGAATGACCCACTGAAGAAAATGCCTTCAATAGCAGCAAATGCCACCA 1025288 Query 23657 GACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTT-- 23714 | | |||| || | | || ||||||| | | | ||||| || || Sbjct 1025287 ATCTTTCTGCAAACAAGGCTTCTTCGTCTTGAATCCATCTAATAGCCCAATCTGCTTTTT 1025228 Query 23715 ---CAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT 23771 |||| | | | ||| | ||||| || || || | ||| || | | Sbjct 1025227 CACCAATGT-----ATTTAATATTGTCAATGGCGTTGAACAAGAAATCGGCCTCCTTAGG 1025173 Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 ||| | | || || ||||||| | ||| |||| ||||| |||||||| || Sbjct 1025172 ATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTTCTGAATGGATATTTTCCATCAT 1025113 Query 23832 AATCTGAAACCCATAAAAACATC-TAGCTTCAGACAATTGAACATCATTAAAAAATCTTT 23890 ||||| || | ||| || | | ||||||| | || ||| ||| || |||| ||| Sbjct 1025112 GATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAGTTTAACTTCAGTACAAAAGTTTT 1025054 Query 23891 TAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTA 23950 | | || ||||| || || |||||||| |||||||| || || | ||| | | Sbjct 1025053 CAACCAAGTTTTCATTGACTATACCATCTGATGCAGCAAAAAAGGCTAAAACTCTTGAGA 1024994 Query 23951 TAAAATGTCTTTCATC--AGTTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAAT 24007 | ||| ||||||||| || || | |||| |||||||| || |||||| || | Sbjct 1024993 TGAAAAATCTTTCATCTTTATTCATTTTATTTTCCCAATCATCAAAATCTTTACTCAAGT 1024934 Query 24008 CAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCAT 24067 ||| ||| || |||||||||| ||| | | ||| || | |||||| ||| Sbjct 1024933 CAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTTCTTGTAGAAAGTCCAAATTTCAG 1024874 Query 24068 TATGTTGTATTGGAAA 24083 || || ||||||||| Sbjct 1024873 GATATTTTATTGGAAA 1024858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487022210000