Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq1 205 1e-47 seq2 96.9 5e-15 seq3 84.2 3e-11 >seq1 Length=2377843 Score = 205 bits (226), Expect = 1e-47 Identities = 390/569 (69%), Gaps = 33/569 (6%) Strand=Plus/Minus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || || | | Sbjct 1090744 AAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAGACACTTTGGTGCTGAATATAAAG 1090685 Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 |||| || | |||| || ||||| ||||| ||||| | || || | || | Sbjct 1090684 ATTGTGATGCTGATTATACTGGACAAGGTTATGATCAGTTGCAAGATATCATTAAGAAAT 1090625 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | || | ||||| | ||| | | || | |||| |||||||||||| | ||| | | Sbjct 1090624 TAAAGTCCAACCCATATGATAGAAGAATAATCATGAGTGCCTGGAATCCACCAGATTTTG 1090565 Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCA------CAGACA 50706 || ||| | ||||||||| |||||||| || |||||||| |||| | |||| | Sbjct 1090564 ATAAAATGGCTTTACCTCCATGTCATGTCTTTTGTCAATTCTATGTTAATTTCCCAGAAA 1090505 Query 50707 ATGTT---------TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCG 50757 | | | ||||| ||| || ||||| ||||| |||||||||||| || | Sbjct 1090504 ACGCTAAACCTAAATTATCATGTTTATTGTATCAGAGATCTTGTGATATGGGTTTGGGAG 1090445 Query 50758 TTCCTTTCAACGTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATA 50817 ||||||||||| | ||||| || ||||| ||||| | |||| ||||| | || |||| Sbjct 1090444 TTCCTTTCAACATTGCTTCCTATGCTTTGTTAACTAAGATGATTGCTCATGTGGTTGATA 1090385 Query 50818 TGAAACCGGGAGAATTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCG 50877 || | || |||||||||||||| | || || ||||| | || | ||||| || | Sbjct 1090384 TGGATTGTGGTGAATTTATTCATACTATGGGTGATGCTCACGTGTATTTGGATCATGTGG 1090325 Query 50878 ATGCTTTAAAGGAGCAA-TTGACTCGAACGGTAAAGCCGGCGCCGATTTTAATT-TTAAA 50935 ||||||| || || ||| |||| |||| ||| | || | ||| || ||||| Sbjct 1090324 ATGCTTTGAAAGAACAACTTGA-ACGAATTCCAAAACAATTTCCTAAATTAGTTATTAAA 1090266 Query 50936 GAA---AAAATCGATCGAACTAAGA---------GATTTTAAATTTGAAGA-TTTCGAAT 50982 ||| | || ||| ||| ||| | ||||| | |||||||| |||| ||| Sbjct 1090265 GAAGATAGAAAAGAT-GAAATAAAATCAATCGACGATTTCGAGTTTGAAGATTTTCAAAT 1090207 Query 50983 TGTTGGATTACGATCCTCATCCTTCTATT 51011 ||||||| ||||| || ||||| | ||| Sbjct 1090206 TGTTGGA-TACGAACCATATCCTCCAATT 1090179 >seq2 Length=1666313 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 155889 CCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAAT 155948 ||||||||||| ||||| |||||| || | | ||| || | || |||||||| ||| Sbjct 220389 CCCTTTTCATCAGGTAAAGAAATTTCGATTTGAATTTCAAATCTACCTGGTCTTAACAAT 220330 Query 155949 GCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGAT 156008 || |||||||| || | ||||||||||| || | |||||| || || || Sbjct 220329 GCAGTATCAATTAAATCCAAACGATTGGTCATACCAATAACTAAAATATTATTCAATTGA 220270 Query 156009 TCTACACCGTCTATTTTAGACAATAATTGATTGACTAC 156046 || ||||| || ||||| || |||||||||||||| || Sbjct 220269 TCAACACCATCCATTTTGGATAATAATTGATTGACAAC 220232 >seq3 Length=1232947 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 63716 TCGTTAAAATAAAATTAAGATCTTCTAAAATACCAGAAATAGGTGATAAATTTGCTTCTT 63775 |||| ||| | | | | ||| | | || || || |||| ||||||||||||||||| | Sbjct 1155533 TCGTCAAAGTTAGAATGAGAACAACCAAGATTCCGCAAATTGGTGATAAATTTGCTTC-T 1155591 Query 63776 TTACA-GCTCAAAAAGGTACGTGTGGTATGATTTATCGACAAGAAGATATGCCTTTTACC 63834 ||| | |||||| ||||| ||| | | |||| |||| ||||||||||| || | Sbjct 1155592 AGACATGGTCAAAAGGGTACTATTGGGGTTACTTATAGACATGAAGATATGCCATTCAGT 1155651 Query 63835 AAAGACGGTATCGTACCCGATCTCGTCATCAATCCACACGCTTTTCCCAGTCGTATGACC 63894 ||| ||||| || || ||| | | ||||| || || ||| |||| |||||||| Sbjct 1155652 GCAGAAGGTATTGTCCCAGATTTGATTATCAACCCTCATGCTATTCCATCCCGTATGACA 1155711 Query 63895 GTT 63897 ||| Sbjct 1155712 GTT 1155714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667073949234000