Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 244 1e-59 seq2 111 2e-19 >seq1 Length=4294417 Score = 244 bits (270), Expect = 1e-59 Identities = 1344/2135 (63%), Gaps = 45/2135 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| || || ||||| | | |||||||| || ||||| || || || | Sbjct 3286024 GTGAATTGAATAGGGGCAGATGCAGCCTGAGTACGTAGGTAATACATACCTGTCTTCAAT 3285965 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||||| || || ||||| || ||||| | |||| || ||| Sbjct 3285964 CCCTTTGACCATCCATAGAAGTGCATCGACGTAAGTTTTCCAATGGTCGGTGCTTGCATA 3285905 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAA---GGCTCCCCTGTCTGCAGCCATTTTT 52984 || || || | | || || || || | ||||| | ||||| ||||| | Sbjct 3285904 TGAATGTTAAGACTCTGTGACTGGTCAATATATGGGGCTCGC---TCTGCTGCCATATCA 3285848 Query 52985 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 53044 || || | ||| || || ||||| | || || |||| | || || || || || Sbjct 3285847 ATAATAGCCTTCTGGCTGATCTCCCAGACCGTCTTGTAAAGCTGTTTCATGTCATCGGGG 3285788 Query 53045 AGGTTTGT---ATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 53101 | || | ||| ||||| || ||||| || | || | | ||| || || || ||| Sbjct 3285787 ATATTCCTGAGATTTTGAATTGAACCACCCTCAGCAATTAGGCGATTTTTCATGTCTTCA 3285728 Query 53102 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 53161 ||||| || | || || | || | | || | || || || | ||| || ||| Sbjct 3285727 TTCCACAAACCCATGTCAACTAGATCTTTCAAAAGGTAGGGGTTCACGATTTGGAACTCT 3285668 Query 53162 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 53221 || | | || | |||| |||| |||| |||||| || || | | | |||||| | Sbjct 3285667 CCTGCAAGCACACGACGAGAATAAAGATTAGAGGTATAAGGCTCAAAACATTCATTAAAT 3285608 Query 53222 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 53281 ||||| || || | || || ||||| ||||| || ||||| | || || | | | Sbjct 3285607 CCCAATATCTGTGACGTAGACGCAGTTGGCATCGGAGCCACAAGTAGTGAGTTACGCAAA 3285548 Query 53282 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 53341 || || | | ||| || ||||| ||||| ||||| | ||| | || || Sbjct 3285547 CCATACTTAGCCAATTTCTCCTTTAGTTCATCCCAGTTCCATAAATCAGTAGGCTCACGA 3285488 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 53400 ||| | | ||| || || | | | ||| | || || ||||| Sbjct 3285487 CCCCATAGGTCAAATTGCAATAAACCCTTGGAAGCAGGGCTA-CCTTCGTAAGTTTCGTA 3285429 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460 || || || | || | |||| ||| | ||| | ||| ||| |||||| ||||| Sbjct 3285428 AGGACCAAACTCCCTCGCCAATTCAACACTTGACTCGAGTGCGGCGTGATAAATTGTTTC 3285369 Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 53520 ||| |||| | || || | | | || || |||| ||||||||| ||| || Sbjct 3285368 GAATATCTGGATGTTCAGCTGTCGAGCCTCAGGGCTGTCAAATGGAAGGCGTAACTCAAA 3285309 Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 || | ||| || || ||||||||||| | | || || | | || | || || Sbjct 3285308 GAAAGTGTCGGCCAACCCTTGAACACCTAGTGCAATTGGACGGTTCTTCATGTTTGAACG 3285249 Query 53581 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAAT 53640 |||||| | |||||| || ||| ||| |||| | ||||| || | || Sbjct 3285248 CCTAGCTTCCTCCACAGGATAGTAGTTACGATCAATAACTCGGTTGAGATTCCGTGTGAT 3285189 Query 53641 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTG---TCCATC---------TAT 53688 | |||| ||||||| | ||||| | || ||| | |||||| | Sbjct 3285188 GATTTTGGCCACATCATGAAGTTTTTGGAAGTCATACCAGATTCCATCACCAGTAGCTTC 3285129 Query 53689 TAC-AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 ||| |||| | ||| || | ||| || ||||| || || || ||| | | || Sbjct 3285128 TACGAAACGCGG-CAAGGCCAGAGAGGCAAGATTGCACACTGCAGTCTCCTCTGGGGACG 3285070 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 || | | ||||| |||||| || ||||||| || || | ||||| |||| Sbjct 3285069 AGTACTCAACGATCTCGCAGCAAAGGTTTGATGACTTGATCGTACCAAGGTTTTGCTGAT 3285010 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 || || ||| || ||||||||||| || || ||||| || ||||| ||| | || | Sbjct 3285009 TAGATTTGCGGTTGCAGGCATCCTTATACAGCATAAATGGGGTTCCAGTCTCAGTTTGAG 3284950 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTC 53927 |||||||| | | ||| | |||| || || | | | | |||| ||| Sbjct 3284949 CCTCTATAATGGAATACCATAGCTTCTGAGCTTTAATGGT-GCGACG-ACCTCTGCCCTC 3284892 Query 53928 --TTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 |||| ||| ||||| | | ||| ||||| || || |||||| | || || Sbjct 3284891 CTTTTCATATGTCGTATAAAGTTTTTCGAACTCCTCACCGTAAACATCAGAGAGACCTGG 3284832 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 54045 || |||| |||||||| | | ||| || || | ||| ||||| || | |||||| | Sbjct 3284831 GCACTCATTGGGACACATTAGAGTCCAGTCCCCATTATCTTTCACCCGCTGCATAAATAA 3284772 Query 54046 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105 || ||||||||||| || | || | ||| | || | | || || || || ||| Sbjct 3284771 GTCGGGAATCCAAAGTGCAACGAAAATATCACGGGCACGAATCTCTTCCTTACCATGATT 3284712 Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165 ||| | ||| | | | | ||||||| ||||||||| || | || || | | Sbjct 3284711 CTTGCGCACATCAATGGTATCAAAAATATCATCATGCCACGGCTCAATATACATCGCAAA 3284652 Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225 | ||||| || ||||| || || || || | || | ||| || ||||| || || | Sbjct 3284651 GGCACCAGGTCGCTTGTTACCACCTTGGTCAACATAGCGAGCAGTATTATTGTAGACACG 3284592 Query 54226 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 54285 |||||| ||||||| |||||||| | |||||| || || | ||| || || |||| Sbjct 3284591 CAACATGGGAATAAGCCCATTGGAAGTACCATTTGTACCAGCGATGTAAGAGCCCGTGGC 3284532 Query 54286 ACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCG 54345 |||||| || ||| || || || || || || | || || || || || ||| Sbjct 3284531 ACGAATGTTGTGAATACTGAGGCCAATTCCTCCGGCATTCTTTGAAATCAAGGCACATTC 3284472 Query 54346 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGC 54404 || | |||||||||||| || || |||||||||||| |||| |||| || || ||| Sbjct 3284471 CTTGAGCGTATCATAGATACCATCAATACTATCATCCTTCATCGTTACCAAG-AAGCAGG 3284413 Query 54405 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 54464 ||||||||| | |||||| ||||| | | ||| ||| || || | || Sbjct 3284412 AAGACATTTGTGGCTTTGGAGTTCCTGCATTGTAGAGGGTTGGACTGGCATGAATGAAGT 3284353 Query 54465 ATTTTTCAGAAAGTAGATT-GTACGTCTCG---ATAGCTGAGTCTATATCCCATTGATGA 54520 |||||| || | | ||| ||| || ||| | ||||| | |||||| ||| Sbjct 3284352 ATTTTTGTGACA-TCCATTGGTAGGTTTCGAGAACAGCTGGG---ATATCCTCGCCATGG 3284297 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || || || || || | ||||| |||||||||||||||||| | ||| || Sbjct 3284296 ATACCCACGGCAACTCTCATTATCATGTGCTGAGGTCTTTCCCATACCTTACCATTATAC 3284237 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 54640 ||||||| ||| ||| ||||| || || || || || | ||| | |||||||| Sbjct 3284236 TTCAGCAGGTATGATCGCTCCAATGTCTTGAATCCGAAGAAATTGAAATTGAAGTCTCGA 3284177 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACA--TCCATGGTAA 54698 || || | || | ||||| ||| |||| | | || || ||| |||| | Sbjct 3284176 TCATACACTATTGCCGAGTTTAGT---TCCTCAGCGTGCTTCACGACAGTGCCATAGAGC 3284120 Query 54699 TACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCC 54757 | || || || || ||| ||| | ||| ||||| || || | | | | ||| Sbjct 3284119 TCCTCCGATATCATTGGACTATGCCGGCGGTTTCGCGGATTAACGTATTCATAAAGATCT 3284060 Query 54758 TTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 54817 ||||| || || |||||| | ||||| || | ||||| || || || || || || | | Sbjct 3284059 TTCATAACCTCGCTAAATTGCTTTTTCGTCTGCTTGTGCAGGTTCGAAACAGCGATACGA 3284000 Query 54818 GCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTC 54877 || || |||| ||||||||| || || ||||| | || || ||||||| | Sbjct 3283999 GCTGCAAGAACGGCATAATCAGGGTGAACGGTAGTCATATAAGCAGCAGTTTCGGCAGCT 3283940 Query 54878 AGAGTGTCCAATTCTACCGTTGTTACTCCATTATA 54912 || |||| | ||| || || | |||||| || || Sbjct 3283939 AGGTTGTCTAGTTCAACTGTGGATACTCCGTTGTA 3283905 >seq2 Length=2231275 Score = 111 bits (122), Expect = 2e-19 Identities = 400/622 (64%), Gaps = 14/622 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 ||||| |||||| ||| | |||||| |||| || | || || || ||||| || Sbjct 2160491 CATGCAAAATCGGTGTGCATACCCTCATCTCGTGAGATGAGCTCATTAGAGAACGTCAGC 2160550 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || ||||| || || ||||| || ||||| || || || ||| ||||| Sbjct 2160551 CCAGGCATGAGACCACGTTTCTTGAGCCAGAAAATGGATGCGAAAGACCCACTGAAGAAG 2160610 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCATGT 24311 | || || | |||||||| || | ||| | || || || || | ||||| | Sbjct 2160611 ACGCCCTCAATGGCCGCAAAAGCGACAAGACGCTCAGCAAAAGTAACGTCTCTGTCGTTG 2160670 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG---CATTG-TCTCTATAGC 24367 ||||| ||||||| ||||||||| || | | || || || | || || || Sbjct 2160671 ATCCAGCGAAGAGCCCAGTCGGCCTTC----TTGCGGATGGGCCCAATGTTATCGATTGC 2160726 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 |||||| | ||| || ||| || ||| |||| ||| |||||||| | || || Sbjct 2160727 ATTAAACAAATAATTAGCTTCTTTGGGATCCTTAATATAGGTATCAATTAGTAGTGAGTA 2160786 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | | || || || || || ||||| || || || || || || || ||||||||| Sbjct 2160787 CGTCTCAGAGTGGATATTCTCAATCATTATCTGGAAGCCATAAAAGCACTTAGCCTCGGG 2160846 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 ||||| || || || || || | | || ||||| || || || ||||| || Sbjct 2160847 GATCTGGACGTCGTCACTGAAATTTTGTACCAAGTTTTCGTTGACGATACCGTCGGATGC 2160906 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATT 24604 || ||||| || | ||| | || ||||| ||| || | | | | | | Sbjct 2160907 CGCGAAAAAGGCAAGCACACGGGAAATGAAATAACGTTCATCAGCATTCATACGATGTTC 2160966 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||| || | | || || | || | || || | |||||||| |||||||| Sbjct 2160967 CCAGTCGTGAAGGTCCTTGCCCAGGTCGATCTCCTCGGCGGTCCAAAAACTCGCCTCTGC 2161026 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724 |||||| || | |||||| || || || | || || || || ||||| |||| ||| Sbjct 2161027 CTTTTTGTAGTGCTGCCAGATCTCGTGGTACTTGATCGGGAACATCACAAACCTATGTGG 2161086 Query 24725 ATTTTTTGCAAGGATTGGTTCC 24746 || | |||||| || ||| Sbjct 2161087 GTTCTCCTTAAGGATAGGCTCC 2161108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721458991120