Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 239 5e-58 seq1 111 2e-19 >seq2 Length=2231275 Score = 239 bits (264), Expect = 5e-58 Identities = 419/605 (69%), Gaps = 9/605 (1%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGC-GCATGTA 116649 |||||||| | |||| ||||| ||||| || | |||| || || |||| ||| || Sbjct 2161092 GAGAACCCACATAGGTTTGTGATGTTCCCGATCAAGTACCACGAGATCTGGCAGCAC-TA 2161034 Query 116650 CAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAG 116709 ||||||||| |||||| || ||||||| ||||||| | |||||| ||||||| Sbjct 2161033 CAAAAAGGCAGAGGCGAGTTTTTGGACCGCCGAGGAGATCGACCTGGGCAAGGACCTTCA 2160974 Query 116710 CGACTGGGAGC---GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTT 116766 ||||||||| | | |||| | | || || ||||||| | ||||| ||||| Sbjct 2160973 CGACTGGGAACATCGTATGAATGCTGATGAACGTTATTTCATTTCCCGTGTGCTTGCCTT 2160914 Query 116767 TTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGT 116826 |||||| || |||||| ||||||||||| || |||| | |||| | | || || Sbjct 2160913 TTTCGCGGCATCCGACGGTATCGTCAACGAAAACTTGGTACAAAATTTCAGTGACGACGT 2160854 Query 116827 GCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTC 116886 ||| | ||||||| |||||| || ||||| ||||| || ||||| | ||||| Sbjct 2160853 CCAGATCCCCGAGGCTAAGTGCTTTTATGGCTTCCAGATAATGATTGAGAATATCCACTC 2160794 Query 116887 GGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGT-- 116944 || | ||| || || || || || || | | | | ||||||| | Sbjct 2160793 TGAGACGTACTCACTACTAATTGATACCTATATTAAGGATCCCAA--AGAAGCTAATTAT 2160736 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 ||||| || || ||||| | || | | || |||||||||| ||||| || ||| Sbjct 2160735 TTGTTTAATGCAATCGATAACATTGGGCCCATCCGCAAGAAGGCCGACTGGGCTCTTCGC 2160676 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||||| || |||||| | | || | ||||| || || || || |||||| | ||| Sbjct 2160675 TGGATCAACGACAGAGACGTTACTTTTGCTGAGCGTCTTGTCGCTTTTGCGGCCATTGAG 2160616 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||||||||||| || |||||| |||| || |||||||||||||| || |||||| Sbjct 2160615 GGCGTCTTCTTCAGTGGGTCTTTCGCATCCATTTTCTGGCTCAAGAAACGTGGTCTCATG 2160556 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || ||||| ||| || ||||||||||| | || |||||| |||| ||| ||| Sbjct 2160555 CCTGGGCTGACGTTCTCTAATGAGCTCATCTCACGAGATGAGGGTATGCACACCGATTTT 2160496 Query 117185 GCCTG 117189 || || Sbjct 2160495 GCATG 2160491 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || ||||| ||| | || || || || | Sbjct 1212039 ATGCAGATTTTCGTCAAGACACTCACGGGTAAGACCATTACCCTTGAGGTTGAGTCCTCG 1211980 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || |||| ||||| ||||| |||||| | ||||| Sbjct 1211979 GATACCATCGACAATGTTAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAA 1211920 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || || ||||| || || | ||||||||| ||||||||| Sbjct 1211919 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCTGACTACAAC 1211860 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 1211859 ATCCAGAAGGAGTCCACCCTTCACCTCGT 1211831 >seq1 Length=4294417 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| || || |||||||| || ||||| ||| | || || || | Sbjct 1826164 AAAAATGCAGATTTTCGTTAAGACCCTCACGGGTAAGACCATTACCCTTGAGGTTGAGTC 1826223 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | | ||||| || || | ||||| ||||| |||||| |||| Sbjct 1826224 CTCGGACACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGA 1826283 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || || || | || | ||| || || ||||| || || | ||||| || ||||| Sbjct 1826284 TCAACAGCGTTTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTA 1826343 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||||||| |||| || || || ||| |||| Sbjct 1826344 CAACATTCAGAAGGAGTCCACCCTCCACCTCGTGCTGCG 1826382 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| ||||| |||||||| || || ||||| |||| || || | | Sbjct 3810511 ATGCAGATATTCGTTAAAACCCTCACGGGAAAGACGATCACTCTCGAAGTGGAGTCTTCG 3810570 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || |||| || || || || || || | || || Sbjct 3810571 GACACCATTGACAATGTGAAGTCCAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAA 3810630 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| || || || ||||| || |||| | || ||| |||||||| Sbjct 3810631 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAGGACGGTAGGACTCTCTCTGACTACAAT 3810690 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 ||||||||||| ||||||| || || || ||||| || Sbjct 3810691 ATCCAGAAGGAATCCACGCTTCACCTTGTCTTGCGTTT 3810728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219077635440