Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 seq2 138 1e-27 >seq1 Length=4294417 Score = 158 bits (174), Expect = 1e-33 Identities = 1009/1606 (63%), Gaps = 44/1606 (3%) Strand=Plus/Minus Query 22396 ATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTT 22455 |||||| || || ||||||||||| ||| | | |||||| | || | |||| Sbjct 3285743 ATTTTTCATGTCTTCATTCCACAAACCCATGTCAACTAGATCTTTCAAAAGGTAGGGGTT 3285684 Query 22456 CACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTT 22514 ||| | ||| ||||| || | |||| || || || |||| || || || | || | Sbjct 3285683 CACGATTTGGAACTCTCCTG-CAAGCACACGACGAGAATAAAGATTAGAGGTATAAGGCT 3285625 Query 22515 CGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACA 22574 | ||| ||||||| ||||| |||||| | || || || || |||||||| |||| | Sbjct 3285624 CAAAACATTCATTAAATCCCAATATCTGTGACGTAGACGCAGTTGGCATCGGAGCCACAA 3285565 Query 22575 GTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAG--CATCGACCAGTCCCA 22632 |||| ||||| | ||| || | ||| | | ||| ||| || |||| ||||| ||| Sbjct 3285564 GTAGTGAGTTACGCAAACCATACTTAGCCAATTTCTCCTTTAGTTCATC--CCAGTTCCA 3285507 Query 22633 CAGATCGGACGGCGTCACATTGTCCCACATA--TCGTATTGCAACACGCCGCGACTCGCC 22690 | ||| | ||| |||| | ||| |||| || ||||||| | || || Sbjct 3285506 TAAATCAGTAGGC-TCAC---GACCC-CATAGGTCAAATTGCAATAAACCCTTGGAAGCA 3285452 Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATA-TATCGCGGCAAGTTCGCAGCTCGCCTC 22749 ||||| |||||||| |||||||| |||||| | | | || ||| | || || | ||| Sbjct 3285451 GGGCTACCTTCGTAAGTTTCGTAAGGACCAAACTCCCTCGCCAATTCAACA-CTTGACTC 3285393 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GCGGCGACGC 22808 | ||| ||| ||| || || ||||| || | |||||| | | || || | || Sbjct 3285392 GAGTGCGGCGTGATAAATTGTTTCGAATATCTGGATGTTCAGCT-GTCGAGCCTCAGGGC 3285334 Query 22809 TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGA 22868 | || | || | || | | | ||| | ||| |||| || ||||| |||| | | Sbjct 3285333 TGTCAAATGGAAGGCGTAACTCAAAGAAAGTGTCGGCCAACCCTTGAACACCTAGTGCAA 3285274 Query 22869 TCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGA 22928 | || ||||| |||| || || | || || || |||||| | || ||| | Sbjct 3285273 TTGGACGGTTCTTCATGTTTGAACGCCTAGCTTCCTCCACAGGATAGTAGTTACGATCAA 3285214 Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | || ||| | || | || | ||||| | | | ||||| | Sbjct 3285213 TAACTCGGTTGAGATTCCGTGTGATGATTTTGGCCACATCATGAAGTTTTTGGAAGTCAT 3285154 Query 22989 AAACGCCCGATTGTA-CAACA--AACTTGTTG----------ACGGCGATCGAGGCAAGA 23035 | || |||| | || || | ||| | | ||| | ||||||||| Sbjct 3285153 A----CCAGATTCCATCACCAGTAGCTTCTACGAAACGCGGCAAGGCCAGAGAGGCAAGA 3285098 Query 23036 TTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTA 23095 ||||| || || ||| ||| ||||| |||||| || || ||| || || || Sbjct 3285097 TTGCACACTGCAGTCTCCTCTGGGGACGAGTACTCAACGATCTCGCAGCAAAGGTTTGAT 3285038 Query 23096 CACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGC 23155 |||| ||||| || | || ||| || ||| || ||||| | |||||| || ||| Sbjct 3285037 GACTTGATCGTACCAAGGTTTTGCTGATTAGATTTGCGGTTGCAGGCATCCTTATACAGC 3284978 Query 23156 ATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCG 23215 || | || || || ||||| || | ||| || || | ||| | ||||||| Sbjct 3284977 ATAAATGGGGTTCCAGTCTCAGTTTGAGCCTCTATAATGGAATACCATAGCTTCTGAGCT 3284918 Query 23216 TGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGT--CAAAT 23272 | || || ||| | ||||| || | || || | | ||| || | | | || Sbjct 3284917 TTAATGGTGCG-ACGACCTCTGCCCTCCTTTTCATA--TGTCGTATAAAGTTTTTCGAAC 3284861 Query 23273 TCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATT 23332 || |||||||| || | || || || | | | |||||||| ||| |||| Sbjct 3284860 TCCTCACCGTAAACATCAGAGAGACCTGGGCACTCATTGGGACACATTAGAGTCCAGTCC 3284801 Query 23333 GAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCG 23392 | || || || || |||||| | || || ||||| || || ||| | || Sbjct 3284800 CCATTATCTTTCACCCGCTGCATAAATAAGTCGGGAATCCAAAGTGCAACGAAAATATCA 3284741 Query 23393 CGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCC 23452 ||||| || | ||| || || || ||||| || ||| | || || | || Sbjct 3284740 CGGGCACGAATCTCTTCCTTACCATGATTCTTGCGCACATCAATGGTATCAAAAATATCA 3284681 Query 23453 GCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCG 23512 ||||||||||||| | || | ||||| || || |||| ||| || || || || || Sbjct 3284680 TCATGCCACGGCTCAATATACATCGCAAAGGCACCAGGTCGCTTGTTACCACCTTGGTCA 3284621 Query 23513 ACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG 23572 || || || || || || ||||| || | | ||| || | || || ||||| | || Sbjct 3284620 ACATAGCGAGCAGTATTATTGTAGACACGCAACATGGGAATAAGCCCATTGGAAGTACCA 3284561 Query 23573 CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCT 23632 | || || | || || | || |||| |||||||| || || || ||| Sbjct 3284560 TTTGTACCAGCGATGTAAGAGCCCGTGGCACGAATGTTGTGAATACTGAGGCCAATTCCT 3284501 Query 23633 CCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTG 23692 ||| | || || |||| || |||| || || || || ||||| || || || || Sbjct 3284500 CCGGCATTCTTTGAAATCAAGGCACATTCCTTGAGCGTATCATAGATACCATCAATACTA 3284441 Query 23693 TCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAG 23752 || || || ||| |||||||| || ||||||||||| | || || || | || | Sbjct 3284440 TCATCCTTCATCGTTACCAAGAAGCAGGAAGACATTTGTGGCTTTGGAGTTCCTGCATTG 3284381 Query 23753 AACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATG 23812 | || || || ||||| || | |||||| | ||||| | ||| || |||| Sbjct 3284380 TAGAGGGTTGGACTGGCATGAATGAAGTATTTTTGTGACATCCATTGGTAGGTTTCGAGA 3284321 Query 23813 GCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGT 23872 | || || ||||| || || ||||| | ||| || | ||| ||||||| |||||| Sbjct 3284320 ACAGCTGGGATATCCTCGCCATGGATACCCACGGCAACTCTCATTATCATGTGCTGAGGT 3284261 Query 23873 CTCTCGACCGTGAC--GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATC 23930 || || || | | || ||| || | ||| ||||| || | || || || |||| Sbjct 3284260 CTTTC--CCATACCTTACCATTATACTTCAGCAGGTATGATCGCTCCAATGTCTTGAATC 3284203 Query 23931 CAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 | || | | | || ||||| ||||| | |||||| ||||| || Sbjct 3284202 CGAAGAAATTGAAATTGAAGTCTCGATCATACACTATTGCCGAGTT 3284157 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 31181 ATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGAC 31240 ||| | ||||| |||| || || || |||||| | || ||||| ||||||||| | || Sbjct 3810273 ATTTATTCAAA--TGCAGATCTTTGTGAAGACTTTAACCGGCAAGACGATCACCTTGGAG 3810330 Query 31241 GTTGAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGT 31299 || || |||| || | | |||| | || || || ||| | ||||||||| || | Sbjct 3810331 GTGGAGTCGTCGGATACTATCGATAATGTGAAGTCAAAGATTCA-GGACAAGGAGGGTAT 3810389 Query 31300 GCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTAT 31359 || || ||||||||||| | || |||||||| || || | || || ||| | Sbjct 3810390 TCCACCTGACCAGCAGCGATTGATTTTCGCTGGTAAGCAACTTGAGGATGGCCGTACTTT 3810449 Query 31360 GAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | ||||| |||||||| || || || ||||| ||||| || Sbjct 3810450 GTCTGATTACAACATTCAGAAGGAGTCCACTCTGCATCTCGT 3810491 >seq2 Length=2231275 Score = 138 bits (152), Expect = 1e-27 Identities = 407/614 (66%), Gaps = 25/614 (4%) Strand=Plus/Minus Query 57525 GAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTAC 57584 ||||| || | ||| ||||| ||||| ||||| | || | || || ||| | ||| Sbjct 2161092 GAGAACCCACATAGGTTTGTGATGTTCCCGATCAAGTACCACGAGATCTGGCAGCACTAC 2161033 Query 57585 AAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGC 57644 ||||||||||| || |||||||||| ||| || | |||||| ||||| || | Sbjct 2161032 AAAAAGGCAGAGGCGAGTTTTTGGACCGCCGAGGAGATCGACCTGGGCAAGGACCTTCAC 2160973 Query 57645 GATTGGGATTCCCTC-AAAGAAT-CTGA-GA--GAAATTTTATTAAACACGTGTTGGCGT 57699 || ||||| | || | |||| |||| || | |||| ||| | ||| | || | Sbjct 2160972 GACTGGGA--ACATCGTATGAATGCTGATGAACGTTATTTCATTTCCCGTGTGCTTGCCT 2160915 Query 57700 TTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGA 57757 ||||||| |||||||| ||||| || ||||| || ||||| | | | ||||| | || Sbjct 2160914 TTTTCGCGGCATCCGACGGTATCGTCAACGAAAACTTGGT--ACAAAATTTCAGTGACGA 2160857 Query 57758 AGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCA 57817 || || | | ||||| | |||||||| || || || | ||||| || | || Sbjct 2160856 CGTCCAGATCCCCGAGGCTAAGTGCTTTTATGGCTTCCAGATAATGATTGAGAATATCCA 2160797 Query 57818 TTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA---CAACGACGAGAAACG 57874 || || | ||| || ||||| || ||||| || | ||||| ||| || | || Sbjct 2160796 CTCTGAGACGTACTCACTACTAATTGATACCTATATTAAGGATCCCAAAGAAGCTAA--- 2160740 Query 57875 TAGACTGTTCAACGCGATCGA-AACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAA 57933 | |||| || || ||||| |||| || | | ||| ||||||||| || ||| | Sbjct 2160739 TTATTTGTTTAATGCAATCGATAACATTGGGC-CCATCCGCAAGAAGGCCGACTGGGCTC 2160681 Query 57934 TCAAATGGATAAAAAGCGCCACGGCC---ACGTTCGCCGAGAGGCTAATCGCGTTCGCCG 57990 | ||||| || || || | | || || || ||| | || |||| || || | Sbjct 2160680 TTCGCTGGATCAA---CGACAGAGACGTTACTTTTGCTGAGCGTCTTGTCGCTTTTGCGG 2160624 Query 57991 CCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCG 58050 || | || || | ||||| || || || | || || ||| | |||||||| | Sbjct 2160623 CCATTGAGGGCGTCTTCTTCAGTGGGTCTTTCGCATCCATTTTCTGGCTCAAGAAACGTG 2160564 Query 58051 GCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATA 58110 | || ||||| || |||||||| || ||| | || || || || |||||| | || | Sbjct 2160563 GTCTCATGCCTGGGCTGACGTTCTCTAATGAGCTCATCTCACGAGATGAGGGTATGCACA 2160504 Query 58111 CTGATTTTGCGTGC 58124 | |||||||| ||| Sbjct 2160503 CCGATTTTGCATGC 2160490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766294130480