Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 241 2e-58 seq2 129 7e-25 >seq1 Length=4294417 Score = 241 bits (266), Expect = 2e-58 Identities = 1343/2134 (63%), Gaps = 43/2134 (2%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| || || ||||| | | |||||||| || ||||| || || || | Sbjct 3286024 GTGAATTGAATAGGGGCAGATGCAGCCTGAGTACGTAGGTAATACATACCTGTCTTCAAT 3285965 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || |||||| || || ||||| ||| ||||| | |||| || ||| Sbjct 3285964 CCCTTTGACCATCCATAGAAGTGCATCGACGTAAGTTTTCCAATGGTCGGTGCTTGCATA 3285905 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAA---GGCTCCCCTGTCTGCAGCCATTTTT 62222 || || || | | || || || || | ||||| | ||||| ||||| | Sbjct 3285904 TGAATGTTAAGACTCTGTGACTGGTCAATATATGGGGCTCGC---TCTGCTGCCATATCA 3285848 Query 62223 ATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 62282 || || | ||| || || ||||| | || || |||| | || || || || || Sbjct 3285847 ATAATAGCCTTCTGGCTGATCTCCCAGACCGTCTTGTAAAGCTGTTTCATGTCATCGGGG 3285788 Query 62283 AGGTTTGT---ATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 62339 | || | ||| ||||| || ||||| || | || | | ||| || || || ||| Sbjct 3285787 ATATTCCTGAGATTTTGAATTGAACCACCCTCAGCAATTAGGCGATTTTTCATGTCTTCA 3285728 Query 62340 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCT 62399 ||||| || | || || | || | | || | ||||| || | |||||| ||| Sbjct 3285727 TTCCACAAACCCATGTCAACTAGATCTTTCAAAAGGTAGGGGTTCACGATTTGGAACTCT 3285668 Query 62400 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62459 || | | || | |||| |||| |||| |||||| || || | | |||||| | Sbjct 3285667 CCTGCAAGCACACGACGAGAATAAAGATTAGAGGTATAAGGCTCAAAACATTCATTAAAT 3285608 Query 62460 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62519 ||||| || || | || || ||||| ||||| || ||||| | || || | | | Sbjct 3285607 CCCAATATCTGTGACGTAGACGCAGTTGGCATCGGAGCCACAAGTAGTGAGTTACGCAAA 3285548 Query 62520 CCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACA 62579 || || | | ||| || ||||| | ||||| ||||| | ||| | || || | Sbjct 3285547 CCATACTTAGCCAATTTCTCCTTTAGTTCATCCCAGTTCCATAAATCAGTAGGCTCACGA 3285488 Query 62580 NNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATA 62638 | |||| | | ||| || || | | | ||| | || || || || Sbjct 3285487 CCCCATAGGTCAAATTGCAATAAACCCTTGGAAGCAGGGCTA-CCTTCGTAAGTTTCGTA 3285429 Query 62639 TGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62698 || || || | || | || | ||| | ||| | ||| ||| |||||| ||||| Sbjct 3285428 AGGACCAAACTCCCTCGCCAATTCAACACTTGACTCGAGTGCGGCGTGATAAATTGTTTC 3285369 Query 62699 AAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAAT 62758 || |||| | || || | | | || || ||||| ||||||||| ||| || Sbjct 3285368 GAATATCTGGATGTTCAGCTGTCGAGCCTCAGGGCTGTCAAATGGAAGGCGTAACTCAAA 3285309 Query 62759 AAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62818 || | ||| || || ||||||||||| | | || || | | || | || || Sbjct 3285308 GAAAGTGTCGGCCAACCCTTGAACACCTAGTGCAATTGGACGGTTCTTCATGTTTGAACG 3285249 Query 62819 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62878 |||||| | |||||| || ||| ||| |||| | |||||||| | || Sbjct 3285248 CCTAGCTTCCTCCACAGGATAGTAGTTACGATCAATAACTCGGTTGAGATTCCGTGTGAT 3285189 Query 62879 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC---CCATC---------TAT 62926 | |||| ||||||| | ||||| | || ||| | | ||||| | Sbjct 3285188 GATTTTGGCCACATCATGAAGTTTTTGGAAGTCATACCAGATTCCATCACCAGTAGCTTC 3285129 Query 62927 TAC-AAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 ||| |||| | ||| || | ||| || ||||| ||||| || ||| | | || Sbjct 3285128 TACGAAACGCGG-CAAGGCCAGAGAGGCAAGATTGCACACTGCAGTCTCCTCTGGGGACG 3285070 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 || | | ||||| |||||| || ||||||| || || | ||||| |||| Sbjct 3285069 AGTACTCAACGATCTCGCAGCAAAGGTTTGATGACTTGATCGTACCAAGGTTTTGCTGAT 3285010 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 || || ||| || ||||||||||| || || ||||| || ||||| ||| | |||| Sbjct 3285009 TAGATTTGCGGTTGCAGGCATCCTTATACAGCATAAATGGGGTTCCAGTCTCAGTTTGAG 3284950 Query 63106 ATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCT 63164 |||||||| | | ||| | | || |||| || || | ||| | || Sbjct 3284949 CCTCTATAATGGAATACCATA-GCTTCTGAGCTTTAATGGTGCGACGACCTCTGCCCTCC 3284891 Query 63165 CTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 |||| ||| ||||| | | ||||||||| || || |||||| | | || Sbjct 3284890 TTTTCATATGTCGTATAAAGTTTTTCGAACTCCTCACCGTAAACATCAGAGAGACCTGGG 3284831 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 || |||| |||||||| | | ||| || || | ||| ||||| || | |||||| | Sbjct 3284830 CACTCATTGGGACACATTAGAGTCCAGTCCCCATTATCTTTCACCCGCTGCATAAATAAG 3284771 Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 || ||||||||||| || | || | ||| | | | | || || || || |||| Sbjct 3284770 TCGGGAATCCAAAGTGCAACGAAAATATCACGGGCACGAATCTCTTCCTTACCATGATTC 3284711 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 || | ||| | | | | ||||||| ||||||||| || | || || || | Sbjct 3284710 TTGCGCACATCAATGGTATCAAAAATATCATCATGCCACGGCTCAATATACATCGCAAAG 3284651 Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464 | ||||| || ||||| || || || || | || | ||| || ||||| || || | | Sbjct 3284650 GCACCAGGTCGCTTGTTACCACCTTGGTCAACATAGCGAGCAGTATTATTGTAGACACGC 3284591 Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA 63524 ||||| ||||||| || || || ||||||| ||||| | ||| || || ||||| Sbjct 3284590 AACATGGGAATAAGCCCATTGGAAGTACCATTTGTACCAGCGATGTAAGAGCCCGTGGCA 3284531 Query 63525 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63584 ||||| || ||| || || ||||| || || | || || || || || ||| Sbjct 3284530 CGAATGTTGTGAATACTGAGGCCAATTCCTCCGGCATTCTTTGAAATCAAGGCACATTCC 3284471 Query 63585 TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCT 63643 || | ||| |||||||| || || || |||||||| |||| |||| || || ||| Sbjct 3284470 TTGAGCGTATCATAGATACCATCAATACTATCATCCTTCATCGTTACCAAG-AAGCAGGA 3284412 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 ||||||||| | | |||||| ||||| | | ||| ||| || || | || | Sbjct 3284411 AGACATTTGTGGCTTTGGAGTTCCTGCATTGTAGAGGGTTGGACTGGCATGAATGAAGTA 3284352 Query 63704 TTTTTCAGAAAGTAGATT-GTACGTCTC---AATAGCTGAGTCTATATCCCATTGATGAA 63759 ||||| || | | ||| ||| || || || ||||| | |||||| ||| | Sbjct 3284351 TTTTTGTGACA-TCCATTGGTAGGTTTCGAGAACAGCTGGG---ATATCCTCGCCATGGA 3284296 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819 | || || || || | ||||| |||||||||||||||||| | || || | Sbjct 3284295 TACCCACGGCAACTCTCATTATCATGTGCTGAGGTCTTTCCCATACCTTACCATTATACT 3284236 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 ||| || ||| ||| ||||| || || || || || | ||| | |||||||| | Sbjct 3284235 TCAGCAGGTATGATCGCTCCAATGTCTTGAATCCGAAGAAATTGAAATTGAAGTCTCGAT 3284176 Query 63880 CGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATA--TCCATGGTAAT 63937 | || | || |||| || || |||| | | || || | | |||| | | Sbjct 3284175 CATACACTATTGCCGAGTTTAG---TTCCTCAGCGTGCTTCACGACAGTGCCATAGAGCT 3284119 Query 63938 ACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 63996 || || || || ||| ||| | ||| |||||||| || | | | ||| | Sbjct 3284118 CCTCCGATATCATTGGACTATGCCGGCGGTTTCGCGGATTAACGTATTCATAAAGATCTT 3284059 Query 63997 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGG 64056 ||| || || |||||| | ||||| || | |||||| || || || | || || | | Sbjct 3284058 TCATAACCTCGCTAAATTGCTTTTTCGTCTGCTTGTGCAGGTTCGAAACAGCGATACGAG 3283999 Query 64057 CGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCA 64116 | || |||| ||||||||| || || ||||| | || || ||||||| || | Sbjct 3283998 CTGCAAGAACGGCATAATCAGGGTGAACGGTAGTCATATAAGCAGCAGTTTCGGCAGCTA 3283939 Query 64117 GAGTGTCCAATTCTACCGTTGTTACTCCATTATA 64150 | |||| | ||| || || | |||||| || || Sbjct 3283938 GGTTGTCTAGTTCAACTGTGGATACTCCGTTGTA 3283905 >seq2 Length=2231275 Score = 129 bits (142), Expect = 7e-25 Identities = 404/622 (65%), Gaps = 14/622 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 ||||| |||||| ||||| |||||| |||| || | || ||||| ||||| || Sbjct 2160491 CATGCAAAATCGGTGTGCATACCCTCATCTCGTGAGATGAGCTCATTAGAGAACGTCAGC 2160550 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || ||||| || || ||||| || ||||| ||||| || || |||||| Sbjct 2160551 CCAGGCATGAGACCACGTTTCTTGAGCCAGAAAATGGATGCGAAAGACCCACTGAAGAAG 2160610 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGT 33758 | || || | || ||||| || | ||| | ||| || || || | ||||| | Sbjct 2160611 ACGCCCTCAATGGCCGCAAAAGCGACAAGACGCTCAGCAAAAGTAACGTCTCTGTCGTTG 2160670 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG---CATCGTT-TCTATGGC 33814 ||||| ||||||| ||||||||| || | | || || ||| || || || Sbjct 2160671 ATCCAGCGAAGAGCCCAGTCGGCCTTC----TTGCGGATGGGCCCAATGTTATCGATTGC 2160726 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 |||||| | ||| || ||| || ||| |||| ||| ||||| || | || || Sbjct 2160727 ATTAAACAAATAATTAGCTTCTTTGGGATCCTTAATATAGGTATCAATTAGTAGTGAGTA 2160786 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 | | || || || || || ||||| ||||| || || || || || ||||||||| Sbjct 2160787 CGTCTCAGAGTGGATATTCTCAATCATTATCTGGAAGCCATAAAAGCACTTAGCCTCGGG 2160846 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 ||||| || || || || || | | || ||||| || || || || || || Sbjct 2160847 GATCTGGACGTCGTCACTGAAATTTTGTACCAAGTTTTCGTTGACGATACCGTCGGATGC 2160906 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATT 34051 || ||||| || | ||| | || ||||| ||| || | | | | | | Sbjct 2160907 CGCGAAAAAGGCAAGCACACGGGAAATGAAATAACGTTCATCAGCATTCATACGATGTTC 2160966 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 ||| || | | || || | || | || || | |||||||| |||||||| Sbjct 2160967 CCAGTCGTGAAGGTCCTTGCCCAGGTCGATCTCCTCGGCGGTCCAAAAACTCGCCTCTGC 2161026 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 34171 |||||| || | |||||| || || || | ||| ||||| || ||||| |||| ||| Sbjct 2161027 CTTTTTGTAGTGCTGCCAGATCTCGTGGTACTTGATCGGGAACATCACAAACCTATGTGG 2161086 Query 34172 ATTTGGTGCAAGGATAGGTTCC 34193 || ||||||||| ||| Sbjct 2161087 GTTCTCCTTAAGGATAGGCTCC 2161108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817450418320