Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 206 3e-48 seq1 113 5e-20 >seq2 Length=2231275 Score = 206 bits (228), Expect = 3e-48 Identities = 423/620 (68%), Gaps = 19/620 (3%) Strand=Plus/Plus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| | ||| ||||| ||| |||| ||||| || | || ||||| || || Sbjct 2160481 GAACAAGACGCATGCAAAATCGGTGTGCATACCCTCATCTCGTGAGATGAGCTCATTAGA 2160540 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| || |||||||| || ||||| |||||||| || |||| |||||| || Sbjct 2160541 GAACGTCAGCCCAGGCATGAGACCACGTTTCTTGAGCCAGAAAATGGATGCGAAAGACCC 2160600 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 |||||||||||||| | |||||| ||||| || || ||||| | || || | || Sbjct 2160601 ACTGAAGAAGACGCCCTCAATGGCCGCAAAAGCGACAAGACGCTCAGCAAAAGTAACGTC 2160660 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG---CATCGT 133121 | || | ||||||||| || ||||| |||||| ||||| || | || || || Sbjct 2160661 TCTGTCGTTGATCCAGCGAAGAGCCCAGTCGGCC--TTCTT--GCGGATGGGCCCAATGT 2160716 Query 133122 T-TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGA 133177 | ||||| || || |||||| || |||| || | | | ||||| || | Sbjct 2160717 TATCGATTGCATTAAACAAA---TAATTAGCTTCTTTGGGATCCTTAATATAGGTATCAA 2160773 Query 133178 TGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGC 133237 | || || ||| | || ||||| | ||||| || || || ||||| ||||||| Sbjct 2160774 TTAGTAGTGAGTACGTCTCAGAGTGGATATTCTCAATCATTATCTGGAAGCCATAAAAGC 2160833 Query 133238 ACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGA 133297 || |||||| | ||| || || | | |||| | |||| ||||||||||||| Sbjct 2160834 ACTTAGCCTCGGGGATCTGGACGTCGTCACTGAAATTTTGTACCAAGTTTTCGTTGACGA 2160893 Query 133298 TGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGT 133357 | |||||| || ||||||||||| ||||| | ||||||| || || | | | Sbjct 2160894 TACCGTCGGATGCCGCGAAAAAGGCAAGCACACGGGAAATGAAATAACGTTCATCAGCAT 2160953 Query 133358 TCAAGC---GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAA 133414 ||| | | ||||||||| | ||||||| |||||| | ||||||| ||||||||| Sbjct 2160954 TCATACGATGTTCCCAGTCGTGAAGGTCCTTGCCCAGGTCGATCTCCTCGGCGGTCCAAA 2161013 Query 133415 ACGACGCCTCGGCTTTTTTGTACATACT-CCACATGTCCGAATATTGTATGGGAAAAATC 133473 | |||||| || |||||||| | || ||| || || || | || || || ||| Sbjct 2161014 AACTCGCCTCTGCCTTTTTGTA-GTGCTGCCAGATCTCGTGGTACTTGATCGGGAACATC 2161072 Query 133474 ACAAACCGGCGGGGGTTTTC 133493 ||||||| | ||||| || Sbjct 2161073 ACAAACCTATGTGGGTTCTC 2161092 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || ||||| ||| | || || ||| || | Sbjct 1212039 ATGCAGATTTTCGTCAAGACACTCACGGGTAAGACCATTACCCTTGAGGTTGAGTCCTCG 1211980 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || || | ||||| ||||| || ||| | |||||| Sbjct 1211979 GATACCATCGACAATGTTAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAA 1211920 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| || || ||||| || || | ||||||||| ||||||||| Sbjct 1211919 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCTGACTACAAC 1211860 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 1211859 ATCCAGAAGGA 1211849 >seq1 Length=4294417 Score = 113 bits (124), Expect = 5e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||||||||| || ||||| || || |||||||| || ||||| ||| | || || ||| Sbjct 1826163 AAAAAATGCAGATTTTCGTTAAGACCCTCACGGGTAAGACCATTACCCTTGAGGTTGAGT 1826222 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || | |||| | | | | || || |||| ||||| |||||||| ||| | | Sbjct 1826223 CCTCGGACACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGG 1826282 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | |||||||| | |||| ||| || || ||||| || || | ||||| || |||| Sbjct 1826283 ATCAACAGCGTTTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACT 1826342 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| || ||||| | || || || | ||||||||| || | || || Sbjct 1826343 ACAACATTCAGAAGGAGTCCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGG 1826394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172681208960