Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 >seq1 Length=4294417 Score = 174 bits (192), Expect = 2e-38 Identities = 505/779 (65%), Gaps = 0/779 (0%) Strand=Plus/Minus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||||| | ||||| |||||| ||| || || ||||| || |||||| Sbjct 3285034 TTGATCGTACCAAGGTTTTGCTGATTAGATTTGCGGTTGCAGGCATCCTTATACAGCATA 3284975 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 || || |||||||| || | |||| || || || || | ||| | || ||| || Sbjct 3284974 AATGGGGTTCCAGTCTCAGTTTGAGCCTCTATAATGGAATACCATAGCTTCTGAGCTTTA 3284915 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 || | | || | || | ||| ||| | ||||| | || || || || || Sbjct 3284914 ATGGTGCGACGACCTCTGCCCTCCTTTTCATATGTCGTATAAAGTTTTTCGAACTCCTCA 3284855 Query 48138 CCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCA 48197 || || |||| | | || || || ||||| |||||||| | | ||| ||| ||| | Sbjct 3284854 CCGTAAACATCAGAGAGACCTGGGCACTCATTGGGACACATTAGAGTCCAGTCCCCATTA 3284795 Query 48198 TTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTT 48257 | ||| || | |||||||| || || |||||||| || | || | ||| | | Sbjct 3284794 TCTTTCACCCGCTGCATAAATAAGTCGGGAATCCAAAGTGCAACGAAAATATCACGGGCA 3284735 Query 48258 CTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGC 48317 | | ||||| || ||| |||| | | |||| || | |||||| ||||| Sbjct 3284734 CGAATCTCTTCCTTACCATGATTCTTGCGCACATCAATGGTATCAAAAATATCATCATGC 3284675 Query 48318 CATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATAT 48377 || || || | ||| || || | |||| ||||| || ||||| ||||| || | ||| Sbjct 3284674 CACGGCTCAATATACATCGCAAAGGCACCAGGTCGCTTGTTACCACCTTGGTCAACATAG 3284615 Query 48378 CTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTT 48437 | |||||||| || || || | ||||| || | || ||||| || ||||||| || Sbjct 3284614 CGAGCAGTATTATTGTAGACACGCAACATGGGAATAAGCCCATTGGAAGTACCATTTGTA 3284555 Query 48438 CCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCC 48497 || | || ||| || | || | || || ||| | || || || || || Sbjct 3284554 CCAGCGATGTAAGAGCCCGTGGCACGAATGTTGTGAATACTGAGGCCAATTCCTCCGGCA 3284495 Query 48498 ATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCT 48557 | || || || | ||||| || || |||||||| || || || ||||||||||| Sbjct 3284494 TTCTTTGAAATCAAGGCACATTCCTTGAGCGTATCATAGATACCATCAATACTATCATCC 3284435 Query 48558 ATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAAT 48617 |||| ||| | || || ||||||||| || | |||||||| ||| | | Sbjct 3284434 TTCATCGTTACCAAGAAGCAGGAAGACATTTGTGGCTTTGGAGTTCCTGCATTGTAGAGG 3284375 Query 48618 GTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAA 48677 |||||| |||||||| || |||| | ||| | | ||| || ||||| | ||||| Sbjct 3284374 GTTGGACTGGCATGAATGAAGTATTTTTGTGACATCCATTGGTAGGTTTCGAGAACAGCT 3284315 Query 48678 TCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 |||||| ||| ||||| | | || | ||||| ||| | ||||||||||| Sbjct 3284314 GGGATATCCTCGCCATGGATACCCACGGCAACTCTCATTATCATGTGCTGAGGTCTTTC 3284256 Score = 100 bits (110), Expect = 3e-16 Identities = 280/424 (66%), Gaps = 13/424 (3%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || |||| ||||||||||| ||||| || || |||||||||||| ||||| | | Sbjct 3285994 GTACGTAGGTAATACATACCTGTCTTCAATCCCTTTGACCATCCATAGAAGTGCAT-CGA 3285936 Query 47073 GTTAA--TTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAA 47130 ||| ||| ||| | ||| || |||||||| |||||| || ||| |||| Sbjct 3285935 CGTAAGTTTTCCAATGG-TCGGTGCTTGCATATGAATGTTAAGACTCTGTGACTGGTCAA 3285877 Query 47131 TAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTG 47190 || ||| ||| || ||||||||||| | |||| || | || |||||||| || | Sbjct 3285876 TATATGGGGCTCGCTCTGCTGCCATATCAATAATAGCCTTCTGGCTGATCTCCCAGACCG 3285817 Query 47191 TTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAGATCCTCCgt 47247 | || |||| ||||| ||||| || |||| ||| | ||||||||| || || || | Sbjct 3285816 TCTTGTAAAGCTGTTTCATGTCATCGGGGATATTCCTGAGATTTTGAATTGAACCACCCT 3285757 Query 47248 tttctataattttgtttttta---attcatttgaccaaagttttcgttcagttaatgttt 47304 | || | ||||| | |||||| || || | ||| || || Sbjct 3285756 CAGCAATTAGGCGATTTTTCATGTCTTCATTCCACAAACCCAT---GTCAACTAGATCTT 3285700 Query 47305 ttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATAT 47364 | ||||| | || || || ||||| || ||||| | || || | ||| ||| | || Sbjct 3285699 TCAAAAGGTAGGGGTTCACGATTTGGAACTCTCCTGCAAGCACACGACGAGAATAAAGAT 3285640 Query 47365 TACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAG 47424 || ||||| || || | | |||||||| ||| || || || | || || || || | Sbjct 3285639 TAGAGGTATAAGGCTCAAAACATTCATTAAATCCCAATATCTGTGACGTAGACGCAGTTG 3285580 Query 47425 GCAT 47428 |||| Sbjct 3285579 GCAT 3285576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108666499160