Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-15 seq2 89.7 4e-12 >seq1 Length=4294417 Score = 98.7 bits (108), Expect = 8e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||| ||||| || ||| || |||||||| |||| ||||| || || ||| Sbjct 3810719 ACAAGGTGAAGCGTGGATTCCTTCTGGATATTGTAGTCAGAGAGAGTCCTACCGTCCTCA 3810660 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 || || || || ||||| || | || || |||||||||||||| ||||| ||||| ||| Sbjct 3810659 AGCTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGA 3810600 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTT 563444 || || || || ||||| || || | || | || ||||||||| | || || Sbjct 3810599 ATCTTGGACTTCACATTGTCAATGGTGTCCG-AAGACTCCACTTCGAGAGTGATCGTCTT 3810541 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || ||||||||||| || |||||| Sbjct 3810540 TCCCGTGAGGGTTTTAACGAATATCTGCATA 3810510 Score = 87.8 bits (96), Expect = 1e-11 Identities = 350/545 (64%), Gaps = 7/545 (1%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 || ||||||||| ||||| || ||||| || ||||| ||||| ||| ||||| Sbjct 1864765 AGTTATAGGTATTGATTTGGGTACCACCTACTCCTGTGTAGGTGTCATGCAGCATGGTCG 1864706 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || |||||||| || || |||| | | | ||| ||| ||||||| | || | Sbjct 1864705 TGTCGAGATCATTGCCAACGAACAGGGTAGCCGTATTACCCCAAGTTATGTTGCATTTAA 1864646 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||| | | ||||||||||| || || |||| || | ||| || ||| Sbjct 1864645 CGATGGTGAACGTCTTGTTGGTGATGCTGCCAAGAATCAGGCAGCCTCTAACCCCCACAA 1864586 Query 550171 TACTATTTTTGATGCTAAACGTTTAAT-TGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 || | || || ||| ||| | || || |||| ||||| || ||| ||| ||| Sbjct 1864585 CACGGTGTTCGACATTAAGCGTATCATCGGGTTGAAG-TTTAACGACCCGAGTGTCCAGC 1864527 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 |||||||||| | || ||| | ||| ||| || || | | || | Sbjct 1864526 GTGATATGAAGCGATTCCCATTCAAGGTTGCCGGCAAAAATGGCAAGCCAGTTGTGGAGG 1864467 Query 550290 CT-ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | ||| | || | | || || ||| | || || | || || | |||||| | Sbjct 1864466 TTGACT--TTAATG--GCGAGAAGCAGTTTGCTCCCGAGGAGATCTCGGCCATGGTTCTT 1864411 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 || ||||| | | ||| | || | ||||||| | || || |||| || | Sbjct 1864410 GGCAAGATGAAGGAGATCGCCGAAGATTATCTTGGTCACAAGGTCACTCATGCGGTGGTT 1864351 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || ||||| | || || || || || || ||||| ||| |||| Sbjct 1864350 ACTGTCCCTGCGTACTTCAATGATGCCCAGCGCCAGGCCACCAAGGATGCCGGAACTATT 1864291 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 | || | | ||| | ||| || ||||||| || || |||||||| | || || || Sbjct 1864290 TCCGGTTTGACTGTCATGCGTGTTGTCAATGAGCCAACCGCTGCTGCCATCGCTTACGGT 1864231 Query 550529 CTTGA 550533 || || Sbjct 1864230 CTCGA 1864226 >seq2 Length=2231275 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 390868 CCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATATAACCA 390927 |||||||||| || |||| ||||| || || || | ||||||||||||||| Sbjct 1627844 CCATCATACTGAACCATAATATCTTCCAATGCCTTGACAAGCCGTCTTTGGATATAACCT 1627785 Query 390928 GTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAG 390987 || |||||||| || | |||||||| ||| | |||||| | || ||||| | ||||| Sbjct 1627784 GTCTCTGCAGTCTTCACTGCAGTATCAATCAAACCTTCACGACCAGCCATGGCATGGAAA 1627725 Query 390988 AAAAATTCCATAGGATTGAGTCCA 391011 || || ||| ||| |||||||| Sbjct 1627724 AAGAACTCCTGGGGACTGAGTCCA 1627701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294995194310