Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-21 seq2 93.3 3e-13 >seq1 Length=4294417 Score = 120 bits (132), Expect = 2e-21 Identities = 372/564 (66%), Gaps = 20/564 (4%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGT-TTGGCAAAATGGTAA 474387 |||||||| |||||||| || || || ||| |||||| || || ||||| | || Sbjct 702872 GCAATTGGAATTGATTTGGGTACAACATACTCTTGTGTTGCCCACTTCGCAAAC-GATAG 702814 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || |||||||| ||||||||||| | || || || || | ||| | || || Sbjct 702813 GGTTGAGATTATTGCCAACGACCAAGGTAACCGTACGACTCCTTCGTTCGTTGCCTTCAC 702754 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || || | | ||||| |||||||| || | ||||| || || || || Sbjct 702753 TGACACCGAGCGGTTGATTGGTGATGCTGCCAAGAACCAAGCAGCCATGAACCCCAAGAA 702694 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC--CAA 474565 || | || ||||| || | |||||||| ||||| || | || | ||| ||| Sbjct 702693 CACCGTCTTCGATGCCAAGCGGTTGATTGGCCGTAAGTTCAACGACCCTGAGGTCGTCAA 702634 Query 474566 -TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGA 474624 | || | |||| || || ||||| || | | || || || || | Sbjct 702633 CGACGCTAAG---CATTTCCCATTCAAGGTCATCGACAAGGCCGGAAAGCCTGTCATCCA 702577 Query 474625 AGC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 || |||||| | ||||| || || | || | || || | || || ||||| Sbjct 702576 GGCCGAATACAAG--GGTGAGACCAAGGACTTCACTCCTGAGGAGATCAGCTCCATGGTC 702519 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGA---TGC 474738 | |||| ||||| | ||||| ||| | || || || | || ||| ||| Sbjct 702518 CTCACCAAGATGAAGGAGACCGCTGAGGGC-TACCTCGGTGGTAAGGT---TGAGAGTGC 702463 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 ||||| || ||||| ||||| || ||||| ||||| ||||| || |||||||| || || Sbjct 702462 TGTAATCACCGTTCCTGCATACTTCAATGACTCTCAGCGTCAGGCCACTAAAGACGCTGG 702403 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | || || || || || ||| | ||||| ||||| || || || || ||||| |||| Sbjct 702402 TACGATCGCTGGCCTGAACGTTCTCCGTATCATTAACGAGCCTACCGCCGCCGCTATTGC 702343 Query 474859 TTATGGTCTTGATAAGAATTCTGA 474882 || |||||||| ||||| || || Sbjct 702342 CTACGGTCTTGACAAGAAGTCCGA 702319 Score = 111 bits (122), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || || || || || || || || || || |||| ||||| Sbjct 1826389 ACGCAGACGCAGCACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGT 1826330 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| || || ||||| | ||| |||||||| || || ||||| Sbjct 1826329 GCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAAACGCTGTTGATCCGGGGGGATTCC 1826270 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || ||||| |||||| |||||||| || | | | ||||| Sbjct 1826269 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCAACCTCAAG 1826210 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || ||||| ||||| |||||||||||||| || Sbjct 1826209 GGTAATGGTCTTACCCGTGAGGGTCTTAACGAAAATCTG 1826171 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| | ||| | ||||| ||||| || ||| || | ||| || |||| ||||| Sbjct 3810732 ACGTAAACGCAAGACAAGGTGAAGCGTGGATTCCTTCTGGATATTGTAGTCAGAGAGAGT 3810673 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || || ||||| ||||| |||||||| || | || ||||||||||||||||| || Sbjct 3810672 CCTACCGTCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGAGGAATACC 3810613 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || |||||||| || ||| ||||| || || | | | | ||| | Sbjct 3810612 TTCCTTATCCTGAATCTTGGACTTCACATTGTCAATGGTGTCCGAAGACTCCA-CTTCGA 3810554 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| || |||||||| || || Sbjct 3810553 GAGTGATCGTCTTTCCCGTGAGGGTTTTAACGAATATCTG 3810514 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| | ||| | | ||| ||||||||||| ||||| ||||| | || || Sbjct 3810461 TTGTAATCAGACAAAGTACGGCCATCCTCAAGTTGCTTACCAGCGAAAATCAATCGCTGC 3810402 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| ||||| || |||||||| ||||||||| || ||| || |||||||| Sbjct 3810401 TGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTTGACTTCACATTATCGATAGTATCC 3810342 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | ||| ||| || || || ||||| | |||||| || || || || Sbjct 3810341 GACGACTCCACCTCCAA-GGTGATCGTCTTGCCGGTTAAAGTCTTCACAAAGATCTG 3810286 >seq2 Length=2231275 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || || ||||| || || || | || || |||| || || Sbjct 1211818 ACGAAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 1211877 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || |||||||| || || || | ||| ||||| ||||| || || || Sbjct 1211878 GCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGGATACC 1211937 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| |||||||| || ||| || || ||||| | | | ||||| Sbjct 1211938 CTCCTTGTCCTGAATCTTGCTCTTAACATTGTCGATGGTATCCGAGGACTCAACCTCAAG 1211997 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || ||||| ||||| ||||| |||||||| || Sbjct 1211998 GGTAATGGTCTTACCCGTGAGTGTCTTGACGAAAATCTG 1212036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178384997812