Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 104 3e-17 seq1 87.8 3e-12 >seq2 Length=2231275 Score = 104 bits (114), Expect = 3e-17 Identities = 283/432 (66%), Gaps = 8/432 (2%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || |||||||| ||||| | ||| ||||||| || || | || ||| ||||| | | Sbjct 2160491 CATGCAAAATCGGTGTGCATACCCTCATCTCGTGAGATGAGCTCATTAGAGAACGTCAGC 2160550 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | ||| | ||| || ||||| || || ||||||||| | | ||||| Sbjct 2160551 CCAGGCATGAGACCACGTTTCTTGAGCCAGAAAATGGATGCGAAAGACCCACTGAAGAAG 2160610 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT---GTATTTATTGCTC 18334 | ||||||| | ||| || || | | | ||||||||| | || | | | | | Sbjct 2160611 ACGCCCTCAATGGCCGCAAAAGCGACAAGACGCTCAGCAAAAGTAACGTCTCTGTCGTTG 2160670 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | |||| | ||||| || | | || | || | || || ||| Sbjct 2160671 A---TCCAGCGAAGAGCCCAGTCGGCCTTCTTGCGGATGGGCCCAATGTTATCGATTGCA 2160727 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 |||||||||| || |||||||| ||| || ||||| || || |||| | || ||| Sbjct 2160728 TTAAACAAATAATTAGCTTCTTTGGGATCCTTAATATAGGTATCAATTAGTAGTGAGTAC 2160787 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 | ||||| || || | || || |||||| || | |||||| | |||||||||| Sbjct 2160788 GTCTCAGAGTGGATATTCTCAATCATTATCTGGAAGCCATAAAAGCACTTAGCCTCGGGG 2160847 Query 18515 TATTGAATCTCG-CTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 || | ||| | | |||| ||| |||||| || || || || |||||||| | | Sbjct 2160848 ATCTGGACGTCGTCACTGAAAT-TTTGTACCAAGTTTTCGTTGACGATACCGTCGGATGC 2160906 Query 18574 TGCGAAAAATGC 18585 |||||||| || Sbjct 2160907 CGCGAAAAAGGC 2160918 >seq1 Length=4294417 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| ||||||| | || ||||| || || || | ||||| || ||| Sbjct 3810511 ATGCAGATATTCGTTAAAACCCTCACGGGAAAGACGATCACTCTCGAAGTGGAGTCTTCG 3810570 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || || ||||| ||||| || ||||| || ||| Sbjct 3810571 GACACCATTGACAATGTGAAGTCCAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAA 3810630 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| ||||||||||| || || || ||| | || || || ||| Sbjct 3810631 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAGGACGGTAGGACTCTCTCTGACTACAAT 3810690 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || || | |||||||| Sbjct 3810691 ATCCAGAAGGAATCCACGCTTCA 3810713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871826180400