Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 >seq1 Length=4294417 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||| | || || ||||| || || |||||||| || || | | Sbjct 1826394 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 1826335 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| ||||| || || || || | ||||| | || |||||||| || Sbjct 1826334 AGAGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAAACGCTGTTGATCCGGGGGG 1826275 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | |||||| || || || Sbjct 1826274 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCAACC 1826215 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACG 29795 ||||| || || || || || || | ||| ||||| || ||||||||||| |||| Sbjct 1826214 TCAAGGGTAATGGTCTTACCCGTGAGGGTCTTAACGAAAATCTGCATTTTTTAACG 1826159 Score = 113 bits (124), Expect = 3e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | ||| || ||||| || || |||||||| ||||| | | || || | Sbjct 3810497 CGCAAAACGAGATGCAGAGTGGACTCCTTCTGAATGTTGTAATCAGACAAAGTACGGCCA 3810438 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || ||||| | ||||||| ||||| || || ||||||||||| ||| Sbjct 3810437 TCCTCAAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGTGGAATACCCTCCTTG 3810378 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| |||| || ||| | || | ||| || || || || || | || || Sbjct 3810377 TCCTG-AATCTTTGACTTCACATTATCGATAGTATCCGACGACTCCACCTCCAAGGTGAT 3810319 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAA 29791 || ||||| ||||| || || ||||| |||||||||| || Sbjct 3810318 CGTCTTGCCGGTTAAAGTCTTCACAAAGATCTGCATTTGAA 3810278 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||||| || | |||||||||||||| || || || || || || | | || | | Sbjct 3810728 AAACGCAAGACAAGGTGAAGCGTGGATTCCTTCTGGATATTGTAGTCAGAGAGAGTCCTA 3810669 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 || || || || || |||||| | ||||||| || ||||| || |||||||| || Sbjct 3810668 CCGTCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGAGGAATACCTTCC 3810609 Query 29689 TTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || || || ||| || | || ||| | || | ||||| ||| || ||||| ||||| Sbjct 3810608 TTATCCTG-AATCTTGGACTTCACATTGTCAATGGTGTCCGAAGACTCCACTTCGAGAGT 3810550 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || | ||||||||| ||||||||||| Sbjct 3810549 GATCGTCTTTCCCGTGAGGGTTTTAACGAATATCTGCAT 3810511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219110797679