Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001600375.1_202016-03-01] 19 sequences; 9,313,034 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 seq2 107 1e-18 >seq1 Length=4294417 Score = 131 bits (144), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||||||||| ||||||||||| || || || || || || ||||| ||| Sbjct 1826165 AAAATGCAGATTTTCGTTAAGACCCTCACGGGTAAGACCATTACCCTTGAGGTTGAGTCC 1826224 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||||||| |||| ||| | || | || || ||||| || || | || || || Sbjct 1826225 TCGGACACTATTGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGAATCCCCCCGGA 1826283 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||||||||| || || ||||| || || || || || | |||||| | || || Sbjct 1826284 TCAACAGCGTTTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTA 1826343 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 1826344 CAACATTCAGAAGGAGTCCAC 1826364 Score = 129 bits (142), Expect = 4e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||||||||||||||| ||||||||||||||||| || || || Sbjct 3810511 ATGCAGATATTCGTTAAAACCCTCACGGGAAAGACGATCACTCTCGAAGTGGAGTCTTCG 3810570 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || ||| || || |||||| | || || ||||| Sbjct 3810571 GACACCATTGACAATGTGAAGTC-CAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 3810629 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || ||||| || || || || || |||| | ||| | || ||||| Sbjct 3810630 ACAGCGATTGATCTTTGCTGGTAAGCAGCTTGAGGACGGTAGGACTCTCTCTGACTACAA 3810689 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 3810690 TATCCAGAAGGAATCCAC 3810707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 || |||||||||| || || || || | || || || |||||||| | || || || | Sbjct 3810278 TTCAAATGCAGATCTTTGTGAAGACTTTAACCGGCAAGACGATCACCTTGGAGGTGGAGT 3810337 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | |||| ||| | || ||| | || |||| | || ||||| || ||| | || || Sbjct 3810338 CGTCGGATACTATCGATAATGTGAAGTCAAAGA-TTCAGGACAAGGAGGGTATTCCACCT 3810396 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || ||||| || || || || || || ||||| || || | || ||||| ||| Sbjct 3810397 GACCAGCAGCGATTGATTTTCGCTGGTAAGCAACTTGAGGATGGCCGTACTTTGTCTGAT 3810456 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||||||| || || |||||||| | ||| | ||||| Sbjct 3810457 TACAACATTCAGAAGGAGTCCACTCTGCATCTCGTTTT 3810494 >seq2 Length=2231275 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || |||||||| || || || || || || ||||| ||| || Sbjct 1212039 ATGCAGATTTTCGTCAAGACACTCACGGGTAAGACCATTACCCTTGAGGTTGAGTCCTCG 1211980 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| |||| | || | || ||||| || ||| | || || || || Sbjct 1211979 GATACCATCGACAATGTTAAGAGCAAGA-TTCAGGACAAGGAGGGTATCCCCCCTGACCA 1211921 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || ||||| || || || || || | ||||| | || ||||| Sbjct 1211920 ACAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCTGACTACAA 1211861 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1211860 CATCCAGAAGGAGTCCAC 1211843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009521729652