Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001659765.1_202016-06-08] 52 sequences; 10,081,862 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 304 2e-77 seq3 107 2e-18 >seq6 Length=915354 Score = 304 bits (336), Expect = 2e-77 Identities = 1454/2275 (64%), Gaps = 83/2275 (4%) Strand=Plus/Plus Query 52795 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 52854 || ||| || | ||||||||||| | || || |||| || || | | |||||||| Sbjct 272518 ATTCTTATCGATGGTGAATTGAATAGCTGCAGAAGCGGCTTGTGTTCTCAAGTAGTACAT 272577 Query 52855 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACT 52914 || || || ||||| |||| ||||| || ||||||||||||| ||| | Sbjct 272578 ACCAGTCTTGAGACCCTTCTTCCAACCGTAGAAGTGCATACTTGTTAATTTACCCATTGT 272637 Query 52915 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 52974 || | || |||||||||| || ||| |||||| ||||| | | | || || Sbjct 272638 GGGGGCACGCATGTGGATATTCAAGGAATGAGATTGATCAATGAACACAGCACGATCAGC 272697 Query 52975 AGCCATTTTTATGATCGTCT-TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTA 53032 |||||| | || || | | | |||| | ||||||||| | || || || || || || Sbjct 272698 AGCCATGTCTA-GAACATGTCTTTGAGAAATTTCCCACACCGTCTTGTACAAATCT-TTG 272755 Query 53033 ATATCTTCTGGAAGGTTTGTA---TTCTGAATAGATCCACCATCTACCA-TAATCCTATT 53088 || |||| ||||| |||| | |||||||| || ||||| || || |||| | || Sbjct 272756 ATTTCTTGTGGAATATTTGGAATGTTCTGAATGGA---ACCAT-TATCAGTAATGAT-TT 272810 Query 53089 CTTGATCTCATCATTCCAT---AATTTTCTC--TCGGTTAAAAC-TCTAAGGAGATGCGG 53142 ||| | |||| || ||| || | || || ||| | | ||| || | || Sbjct 272811 GTTGTT-TCATACTTTCATCCCAAATACCTAAATCTACCAAATCCTTTAACAAG-TATGG 272868 Query 53143 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 53202 |||||| | ||| ||||| ||||| || || | |||| ||| || ||| || || || Sbjct 272869 ATTAACAATTTGGAATTCACCAGATAAAACACGACGAGAGTACATGTTAGATGTGTAAGG 272928 Query 53203 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 53262 ||| | | | || || | ||||| ||||| | ||||| ||||| |||||||| ||||| Sbjct 272929 TTCGAAACATTCGTTGTAACCCAAGATTTGTGATGTTGAAGCAGTGGGCATAGGGGCCAC 272988 Query 53263 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT--CTTTT---AGAGGTTCCCAA 53317 ||||| ||||| | ||| ||||||| || || ||| | | ||||||||| Sbjct 272989 TAATAATGAGTTTCTTACACC--ATGTTCT---TTAATGCCTTGTCTCAATGGTTCCCAA 273043 Query 53318 TTCCAAAGATCCGACGG-TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC 53376 | ||| | || || || | | | ||||| || ||| | || Sbjct 273044 TCCCATAATTCTGAAGGATTCTTCTCCCAAAGATCAAA-TTGTAAAAGACCTTG---GGA 273099 Query 53377 G-TACG--ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGC 53433 | || | | ||| |||| ||| || | || | ||| || | ||||||| Sbjct 273100 GATAGGGGAACCTTCATAGGTAGAATAAGTACCGTGAATCTTGGCCAATTCACAAGATTG 273159 Query 53434 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCA 53492 || || ||||||| ||||| ||||| || || || || || || || | || || | Sbjct 273160 TTCCAAGGCACCGTGGTAAATAGTTTCAAAAAT-TTGTTGGTTCAATATTTTTGCCTC-A 273217 Query 53493 GGCTAT-CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATA 53551 || || ||||||| | || | ||||| | ||||||||| || | |||||||| Sbjct 273218 GGAGATTCAAATGGCAGACGCAACATCATAAAAGTGTCTGCTAACCCATTAACACCAAGT 273277 Query 53552 CCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATA 53611 | ||||||||||||||| |||| || | | ||||| |||| || || || ||| | Sbjct 273278 GCAATAGGTCTATGTCTCATATTGGATCTCTTGGCTTCAGGAACTGGGTAGTAGTTACGA 273337 Query 53612 TCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 53671 || || | || || | || | ||| |||| | || || | | |||| |||| Sbjct 273338 TCAATGACCTTGTTCAAATTACGTGTAATAGCTTTAGCGACTTCATGTAATTTGGCAAAA 273397 Query 53672 ---TCAAATTGT------CCATCTA-------TTACAAACATGTTC--AATGCAATAGAT 53713 | ||||| |||||| || || ||| | | ||||| ||||| Sbjct 273398 CTGTACCATTGTTCCTTACCATCTGCCGATACTTCCACACAAGATGGTAATGCGATAGAA 273457 Query 53714 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 53773 || | ||||||||| || |||| || | |||| | || ||| || | | Sbjct 273458 GCTAAATTACAAACTGCAGTTTCATCCTTGTCAGAGTATTCCACGATTTCACAACATAAA 273517 Query 53774 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 53833 || | | || || || | || | ||| |||||||||| ||||| ||||||||| Sbjct 273518 TTGGAAGATTTAATCACACCAAGGTTCTTTTGGTTACTCTTTTCATTACATGCATCCTTA 273577 Query 53834 TAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACA 53893 || || ||||| || |||||||||||| | || | ||||| ||| || | ||| | Sbjct 273578 TAGAGCATGAAAGGTGTACCAGTTTCAGTTTGTGCTTCTAAAATGGCATACCACAACTTT 273637 Query 53894 CGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTT 53951 |||| | ||| | ||| || | | |||| ||| || || |||||| || Sbjct 273638 TGAGCTCTAATTGTC--TTTCTACCACGGCCTTCTTGTTCATAACGTTCGTACAATTTTT 273695 Query 53952 CAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 54011 |||| || || || | |||| | || |||||| |||| ||| | | | | || Sbjct 273696 CAAATTCTTCACCATATACATCTGCTAAACCAGGAGCTTCACTTGGAGAGAAAAGTGTCC 273755 Query 54012 ACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 54068 | ||| |||| ||| || |||||||| || | |||||||||||| | ||| | Sbjct 273756 ATTCT---TCATTCTTTTCGACACGTTTCATGAACAAATCAGGAATCCATAATGCTGGGA 273812 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 ||| |||||| | | | ||| || || || |||||| | | ||| | ||| | | Sbjct 273813 ATAAATCTCTTGCACGAATTTCTTCTTTACCATGGTTCTTTCTGATATCAATGAAATCAA 273872 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 ||||| || ||||| |||||||| || | || | ||||||| | || || || | Sbjct 273873 AGATATCTGAGTGCCATGGTTCCAAATAAAGGGCGAATGCTCCAGGTCTCTTATTGCCAC 273932 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 | ||||| | || | || ||||| ||| |||| | | |||||| || | |||||||| Sbjct 273933 CTTGATCCACATAACGTGCAGTGTTGTTAAAAACACGAACCATTGGGATTAAACCATTGG 273992 Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 54308 | | |||||| || || | || || || | | |||||| ||| ||| | | Sbjct 273993 AAGTACCATTAGTACCTGCAATGTAAGAACCCGTAGAACGAATGTTATGAATATGCAACC 274052 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || || | || || || | || ||| |||||| | |||||| || || | Sbjct 274053 CAATACCACCAGCAGTCTTGGAAATCATGGCACATTCTTTTAATGAATCATAAATACCTT 274112 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 | || ||| || |||| | || ||||| | |||||| || | ||| | Sbjct 274113 CAATGGAATCGTCTTTCATCGCCACAAGGAAACAAGATGCCATTTGTGGATGTGGAGTAC 274172 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA--GAAAGTAGATTGTA 54486 | ||||| || | || |||||||| || | || || ||| || | | |||||| Sbjct 274173 CTGCATTGAAAAGAGTTGGAGAAGCATGGATGAA--ATACCTCAATGACATCAAATTGTA 274230 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || ||||| || || | ||||| |||||| || | || | ||||| | Sbjct 274231 AGTTTCGATCGCAGATTTGATATCTTCACCATGAATACCCAAACTAACTCTCATTATTAG 274290 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || ||||| ||| | || || || | | |||||| || ||| ||||| Sbjct 274291 ATGTTGTGGTCTCTCAGCAGTCAACCCATTGATCCTTAACAAGTAAGAACGTTCTAAAGT 274350 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 || ||||| ||||| ||| || || |||| ||||| | |||| ||||||| | || Sbjct 274351 CTTGAAACCGAAATAATTGAATTGGAAATCTCTGTCGTAGACAATAGCTGAGTTCAATTC 274410 Query 54667 ATCCTTATATTTGTTAACTACATCCATGGTAAT---ACTTGAAATAATCGGAGAATGTTT 54723 |||||| | | |||| | | || ||| | ||||| || || ||||| Sbjct 274411 ATCCTTGTTGGTCATAACGATGT---TGAAAATCTCATCAGAAATCATAGGGGAATGGAC 274467 Query 54724 CCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttt 54783 || || ||||| ||||| | | | ||| || |||| ||| | || | Sbjct 274468 ACCGTTAGCTGGATTCACATAATGGTACAGATCAGAGATTACTTGTGAGAATTGCTTCGT 274527 Query 54784 tGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 |||| ||||| |||||||| || || |||||||||||||| | || ||||| ||||| Sbjct 274528 GGTTTGCTTGTGAAGATTTGAAACAGCAATTCTAGCGGCTAGTGTAGCGTAATCAGGATG 274587 Query 54844 TTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTA 54902 || || || || || | |||| |||| || | | || ||||| || || || | Sbjct 274588 AACAGTGGT-CATGTAAGCACATGTTTCAGCTGCCAAATTATCTAATTCCACTGTAGTAA 274646 Query 54903 CTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAG 54962 | || | || | || |||| | || || || | || ||||||||| || Sbjct 274647 CACCTTCGTAGACACCAGAAATAATACGCTGAGTAATCTTGACAGCGTCTATATGAGAAG 274706 Query 54963 TGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 55017 | ||| ||||| ||||| || ||||| | ||| || ||||| || |||| Sbjct 274707 GATCTAACCCATAGCATAACTTCGATATACGTGCTGTAATCTTATCGAATCTGAC 274761 >seq3 Length=1313108 Score = 107 bits (118), Expect = 2e-18 Identities = 196/281 (70%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 |||||| |||| | | ||||| ||||||| | || || |||||||| || | ||| Sbjct 878960 TTCATCTGGACTGAAAAGAGACCAATCTCCGTTAGACTGTACGCGTTTCATGAACAAATC 879019 Query 54049 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC-TGTATTCT 54107 || ||||| || || || |||| |||||||| ||| ||| || || || || || | Sbjct 879020 TGGTATCCATAGTGCAATGAATAAATCTCTGGCTCTCAATTCATCCTTACCATGGTTTTT 879079 Query 54108 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA 54167 | |||| | | || | | || ||| |||||||| ||||||| ||||| || | Sbjct 879080 TCTTAATTGCAAAAAAT-CAAAAACATCTGAATGCCAGGGTTCCAGATATATA--CAGTA 879136 Query 54168 --CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225 | || || || |||||||||||||| |||| |||||||| || ||||| |||| | Sbjct 879137 TGCACCTGGACGCTTGTTTCCTCCCTGGTCTACATATCTAGCCGTATTATTGAAAACACG 879196 Query 54226 CAACATTGGAATAATACCATTGGATGCACCATT-GGTCCCG 54265 | ||| || || | ||| | || |||||| | ||||| Sbjct 879197 AAGCATGGGGATTAGTCCACTAGAAATACCATTAGATCCCG 879237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721214080960