Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001659765.1_202016-06-08] 52 sequences; 10,081,862 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7 152 5e-32 seq6 125 6e-24 >seq7 Length=888749 Score = 152 bits (168), Expect = 5e-32 Identities = 574/891 (64%), Gaps = 17/891 (2%) Strand=Plus/Minus Query 57534 CGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCA 57593 ||||||||||| | || || ||| |||| | || || ||| | ||||| | ||| Sbjct 211612 CGTAGATTTGTTCTTTTCCCTATTCAATACCACGAAATCTGGCAAGCCTACAAGAGAGCA 211553 Query 57594 GAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT 57653 |||||||| || ||||| | |||||| | || || ||||| || || ||| | Sbjct 211552 GAAGCATCATTCTGGACAGCAGAAGAAATCGATTTGCAGCAGGATTTGGATGACTGGAAC 211493 Query 57654 TCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCA 57710 | | || || ||| ||| ||| ||| | || | ||||| ||||| ||| Sbjct 211492 AACAAGATGAACGAGGGTGAAAGATTTTTCATTTCAAGAGTTCTAGCGTTCTTCGCTGCA 211433 Query 57711 TCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACG 57770 ||||| |||||||| || |||||||||||||| | || || ||||||||| | | Sbjct 211432 TCCGACGGTATTGTGAATGAGAATTTGGTCGAGAACTTCTCTGCCGAAGTGCAAATTCCT 211373 Query 57771 GAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTAT 57830 || || | ||||| ||||| || ||| | || |||||| | || || |||| ||| Sbjct 211372 GAAGCCAAGTGCTTCTACGGGTTCCAAATCATGATGGAAAACATCCACTCTGAAACGTAC 211313 Query 57831 TCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCG 57890 || | | || ||||| ||| | |||| | | ||| | | || || || Sbjct 211312 TCTTTGTTGATTGATACCTACAGTAGGGACTCCAAGGAGGCTGATTTCTTATTTAATGCC 211253 Query 57891 ATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGC 57950 || |||| || || | ||| | |||||||| ||| | || | ||||| || Sbjct 211252 ATTGAAAACATCCCACCAATCAGAGAAAAGGCAGAATGGGCCATTAGGTGGATTCAAGAT 211193 Query 57951 GCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTT 58010 | ||| | || || || || |||| || ||||| || |||||||| ||||| Sbjct 211192 GAAGAAGCCCTTTATGCTGAAAGATTAGTCGCATTTGCCGCAGTTGAAGGTATCTTCTTC 211133 Query 58011 TCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACG 58070 || || || || || || |||||| ||||||| || |||||||| || || || Sbjct 211132 TCAGGGTCTTTCGCTGCCATCTTTTGGTTGAAGAAGAAGGGTCTGATGCCAGGTCTAACC 211073 Query 58071 TTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATG 58130 || ||||| ||||| | | ||||| ||| | ||||| || ||||| || ||| | Sbjct 211072 TTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCATACCGACTTTGCCTGTCTATTA 211013 Query 58131 TACTCTCACATTG--TCAATAAACCGACGCGGGATCGCATCTTGG---ACATTATCACCG 58185 | | ||||| ||| || | | ||| | | ||| || ||| | ||||| || | Sbjct 211012 TTCGCTCAC-TTGAATC-ACAGACCAAGTCCAGAT---ATTGTGGAAAAGATTATTACTG 210958 Query 58186 AGGCGGTCGCGATCGAAAATGAGTT--TGTCACCGAAGCCCTACCGGTGGCCATGCTCGG 58243 | || || | || ||||| ||| | | | | || || || || ||||| |||| || Sbjct 210957 AAGCTGTTTCAATTGAAAA-GAGATACTTTGA-AGATGCTCTCCCCGTGGCTCTGCTGGG 210900 Query 58244 TATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGA 58303 |||||| | | ||| | ||| | || || ||||||||||||||| | | | Sbjct 210899 CATGAACGCCGCGCTAATGAACCAATACGTCGAATTCGTTGCCGACAGACTTCTAGTGGC 210840 Query 58304 ACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTC 58363 || | || | ||||| | |||||| || || |||||| | ||||| Sbjct 210839 TCTTGGTAACGAAAAGTACTACAATGTCACAAATCCATTCGACTTTATGGAAAACATCTC 210780 Query 58364 GCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 || | ||| ||||| || || || || || | ||| ||| || ||||| Sbjct 210779 TCTAGCGGGTAAGACCAATTTCTTTGAGAAGAGAGTCTCCGATTACCAAAA 210729 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || || || || ||||| | || || ||| | || Sbjct 735739 ATGCAAATTTTCGTTAAGACTCTAACCGGTAAGACTATCACTCTGGAAGTGGAATCTTCT 735798 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||||| | || || ||||| Sbjct 735799 GATACCATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGACCAA 735858 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | ||||| || ||||| ||||| || |||||| || ||| || ||||| ||| Sbjct 735859 CAGAGACTAATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTCTGTCTGATTACAAC 735918 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| ||||| || |||| | ||| | || || |||| Sbjct 735919 ATTCAGAAGGAATCTACTCTGCACTTGGTCTTGAGATTAAGAGGTGGTA 735967 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || || ||||| ||||| | || || || | ||| Sbjct 735283 ATGCAAATTTTCGTCAAGACTCTAACTGGTAAAACTATCACTTTAGAAGTCGAGTCTTCC 735342 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || || |||||||||||| | || |||||||| Sbjct 735343 GACACCATCGACAACGTCAAGTCAAAG-ATTCAGGACAAGGAAGGTATTCCACCCGACCA 735401 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| || ||| ||||||| | || | ||||| || Sbjct 735402 ACAGAGACTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCAGAACACTATCTGATTACAA 735461 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| ||||| || |||| || ||||| || || |||| Sbjct 735462 TATCCAGAAGGAATCTACTCTGCACTTGGTTCTAAGACTAAGAGGTGGTA 735511 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || |||| || ||||| ||||| | || || ||| | || Sbjct 736195 ATGCAAATCTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAAGTGGAATCTTCT 736254 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || ||| | ||| |||||||||||| | || || ||||| Sbjct 736255 GATACTATCGATAATGTTAAATCTAAAATTCAGGACAAGGAAGGTATTCCTCCTGACCAA 736314 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || || ||||||||| || ||| || ||||| ||| Sbjct 736315 CAGAGATTGATTTTTGCAGGTAAGCAATTGGAAGACGGTAGAACTCTGTCTGATTACAAC 736374 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || ||||| || |||| | ||||| || || || Sbjct 736375 ATCCAGAAAGAGTCTACTCTGCACTTGGTTTTAAGACTAAGAGGTGG 736421 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || |||||| |||| || || || ||||| | || || ||| | || |||| | Sbjct 849487 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAGGTCGAATCCTCTGACACCAT 849428 Query 31261 CGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTC 31319 || | ||||| || ||| | |||||||||||| | || || ||||| || | Sbjct 849427 TGACAACGTCAAGTCAAAGATTCA-GGACAAGGAAGGTATCCCACCTGACCAACAAAGAT 849369 Query 31320 TAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAA 31379 |||| |||||||| || || |||||||| || || || || || ||||| |||| Sbjct 849368 TAATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACGTTGTCTGACTACAACATCCAAA 849309 Query 31380 AAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| ||| | || |||| || ||| |||| || |||| Sbjct 849308 AGGAATCTACTTTGCACTTGGTTCTAAGATTGAGAGGTGGTA 849267 >seq6 Length=915354 Score = 125 bits (138), Expect = 6e-24 Identities = 588/922 (64%), Gaps = 10/922 (1%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| || || | ||| || || || || || ||| | ||| || || ||||| Sbjct 273449 GCGATAGAAGCTAAATTACAAACTGCAGTTTCATCCTTGTCAGAGTATTCCACGATTTCA 273508 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 ||||| |||| | | || ||| || | || | ||||| || ||| ||| || Sbjct 273509 CAACATAAATTGGAAGATTTAATCACACCAAGGTTCTTTTGGTTACTCTTTTCATTACAT 273568 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | |||||| ||||||||| | || || || || || || | || | || || | Sbjct 273569 GCATCCTTATAGAGCATGAAAGGTGTACCAGTTTCAGTTTGTGCTTCTAAAATGGCATAC 273628 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACCT--GCCTTCTTCCTCGTACTTTTGGT 23258 |||| | ||||| || ||| | |||| |||||||| || || || || Sbjct 273629 CACAACTTTTGAGCTCTAATT-GTCTTTC-TACCACGGCCTTCTTGTTCATAACGTTCGT 273686 Query 23259 ACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317 |||| |||||||| |||| || ||| || || | || || | || | ||| | Sbjct 273687 ACAATTTTTCAAATTCTTCACCATATACA-TCTGCTAAACCAGGAGCTTCACTTGGAGAG 273745 Query 23318 ATGAGACTCCACA-TTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 | || |||| || | || ||||| || ||| |||| || | ||| || ||||||| Sbjct 273746 AAAAGTGTCCATTCTTCATTC-TTTTCGACACGTTTCATGAACAAATCAGGAATCCATAA 273804 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 || ||| | || | || || | || ||||| || ||||||| | | ||| | Sbjct 273805 TGCTGGGAATAAATCTCTTGCACGAATTTCTTCTTTACCATGGTTCTTTCTGATATCAAT 273864 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 || || || | || | ||||| || || | |||| ||| || || || |||||||| Sbjct 273865 GAAATCAAAGATATCTGAGTGCCATGGTTCCAAATAAAGGGCGAATGCTCCAGGTCTCTT 273924 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 |||||| || ||||| || ||||| || |||||||| | || | | ||| || | | Sbjct 273925 ATTGCCACCTTGATCCACATAACGTGCAGTGTTGTTAAAAACACGAACCATTGGGATTAA 273984 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 ||| ||||| | || || || | ||||| | | |||| ||| |||| Sbjct 273985 ACCATTGGAAGTACCATTAGTACCTGCAATGTAAGAACCCGTAGAACGAATGTTATGAAT 274044 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 || || || || || || | | || || ||||| || |||| ||| | | || || Sbjct 274045 ATGCAACCCAATACCACCAGCAGTCTTGGAAATCATGGCACATTCTTTTAATGAATCATA 274104 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 || || || ||| || ||||| |||| || | |||||| || | |||||| | | Sbjct 274105 AATACCTTCAATGGAATCGTCTTTCATCGCCACAAGGAAACAAGATGCCATTTGTGGATG 274164 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATC-CATTCGACATTA 23795 || ||| | || ||| || || || || || | || || | || | ||||| | Sbjct 274165 TGGAGTACCTGCATTGAAAAGAGTTGGAGAAGCATGGATGAAATACCTCAAT-GACATCA 274223 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 |||||| || ||||| || | | || || || || || ||||| | || | || Sbjct 274224 AATTGTAAGTTTCGATCGCAGATTTGATATCTTCACCATGAATACCCAAACTAACTCTCA 274283 Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 | || | | ||| |||||||| | || | || || || | |||| || ||||||| Sbjct 274284 TTATTAGATGTTGTGGTCTCTCAGCAGTCAACCCATTGATCCTTAACAAGTAAGAACGTT 274343 Query 23916 GCATCGTTTTAAATCCAAAATA 23937 | || || || || ||||| Sbjct 274344 CTAAAGTCTTGAAACCGAAATA 274365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766110251840